BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00035243
         (448 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD17398.1| putative non-LTR retroelement reverse transcripta...    91   1e-16
ref|XP_003579203.1| PREDICTED: uncharacterized protein LOC100839...    87   2e-15
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta...    86   4e-15
emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulga...    85   5e-15
emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulga...    85   7e-15

>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1225

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 55/153 (35%), Positives = 82/153 (53%), Gaps = 11/153 (7%)
 Frame = -2

Query: 426 IWTKNKS*SFSPTYKLMV--HVKVHSIYTCNLFNNEVARCCKVN-CPSNRASESNWQ--- 265
           IW K+     + T KL++  H ++   Y    F+ E     K   C + R  E  W+   
Sbjct: 292 IWKKSNK---TNTEKLILELHSQLDLAYEDENFSTEDLLALKWKLCQAYRDEEIFWKLKN 348

Query: 264 -----EVIECVPRKISNAQNEELLAAVMDEEVRVALFQMDPDKAPGPDGMTPAFFQKHWK 100
                  ++ VP  I+   N+ L   +  EEV+ ALF ++PDKAPGPDGMT  F+Q +W 
Sbjct: 349 PQVFDSALQEVPVLITEEMNKSLTKVISPEEVKRALFSLNPDKAPGPDGMTAFFYQHYWD 408

Query: 99  IVGKDIVKMVRDFFATGNLNRELNVTNIV*IPK 1
           + G D++K+V++F +TG  +  LN TNI  IPK
Sbjct: 409 LTGPDLIKLVQNFHSTGFFDERLNETNICLIPK 441


>ref|XP_003579203.1| PREDICTED: uncharacterized protein LOC100839353 [Brachypodium
           distachyon]
          Length = 1236

 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 41/87 (47%), Positives = 56/87 (64%)
 Frame = -2

Query: 261 VIECVPRKISNAQNEELLAAVMDEEVRVALFQMDPDKAPGPDGMTPAFFQKHWKIVGKDI 82
           +I+C+  K+    N++L     D+E+  ALFQ+ P KAPGPDG    FFQ+HW  V KDI
Sbjct: 21  LIDCITAKVDGHMNQDLCKEFTDKEISDALFQIGPLKAPGPDGFPARFFQRHWATVKKDI 80

Query: 81  VKMVRDFFATGNLNRELNVTNIV*IPK 1
           ++ VR+FF TG +   +N T IV IPK
Sbjct: 81  IRAVRNFFVTGAMPYGVNDTIIVLIPK 107


>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1715

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 39/92 (42%), Positives = 59/92 (64%)
 Frame = -2

Query: 276  SNWQEVIECVPRKISNAQNEELLAAVMDEEVRVALFQMDPDKAPGPDGMTPAFFQKHWKI 97
            S+W+E+I  +  K++   N ELL +V D+EVR A+F +  D+APG DG T AF+   W +
Sbjct: 765  SDWEEIISGIAPKVTEQMNHELLQSVTDQEVRDAVFAIGADRAPGFDGFTAAFYHHLWDL 824

Query: 96   VGKDIVKMVRDFFATGNLNRELNVTNIV*IPK 1
            +G D+  MVR FF +  ++ ++N T I  IPK
Sbjct: 825  IGNDVCLMVRHFFESDVMDNQINQTQICLIPK 856


>emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1389

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 43/114 (37%), Positives = 65/114 (57%)
 Frame = -2

Query: 342 NLFNNEVARCCKVNCPSNRASESNWQEVIECVPRKISNAQNEELLAAVMDEEVRVALFQM 163
           +L   E+    K    SN A + N       +   +S A N  L +AV  EE++ A+F +
Sbjct: 397 DLIEKEITLAFKKRFISNPACKFNQNVDFNLLSPIVSEADNAYLTSAVSPEEIKNAVFDL 456

Query: 162 DPDKAPGPDGMTPAFFQKHWKIVGKDIVKMVRDFFATGNLNRELNVTNIV*IPK 1
            PDK+PGPDG  P FFQK+W ++GK + + V+ FF +G + +E+N T +  IPK
Sbjct: 457 APDKSPGPDGFPPYFFQKYWTLIGKSVCRAVQAFFHSGYMLKEVNHTFLALIPK 510


>emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1365

 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 46/96 (47%), Positives = 60/96 (62%), Gaps = 2/96 (2%)
 Frame = -2

Query: 282 SESNWQEV--IECVPRKISNAQNEELLAAVMDEEVRVALFQMDPDKAPGPDGMTPAFFQK 109
           S+  W+E+  I  +  +I   Q E+L+  V  EEVR  +FQM   KAPGPDG+   F+QK
Sbjct: 412 SQEYWEELDGIRHLIPQIDLMQREDLIKPVTREEVRNVVFQMGSLKAPGPDGIPAIFYQK 471

Query: 108 HWKIVGKDIVKMVRDFFATGNLNRELNVTNIV*IPK 1
           HW IVG+DI + V  FF TG + +E N TNI  IPK
Sbjct: 472 HWSIVGEDIWRAVSHFFTTGYILQEWNQTNICLIPK 507