BLASTX nr result
ID: Cnidium21_contig00035107
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00035107
(773 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003611834.1| Pentatricopeptide repeat-containing protein ... 65 1e-18
ref|XP_002307242.1| predicted protein [Populus trichocarpa] gi|2... 68 1e-18
ref|XP_002522354.1| pentatricopeptide repeat-containing protein,... 60 3e-17
ref|XP_003538826.1| PREDICTED: pentatricopeptide repeat-containi... 62 7e-15
ref|XP_004148057.1| PREDICTED: pentatricopeptide repeat-containi... 62 1e-13
>ref|XP_003611834.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513169|gb|AES94792.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 985
Score = 65.1 bits (157), Expect(3) = 1e-18
Identities = 29/65 (44%), Positives = 46/65 (70%)
Frame = -1
Query: 620 PYSSANLEMLRTVLSSCVCNRNVEIRISAA*QILCIHDEEKATNVLLINFYSSIGRWDVF 441
PY N+E+ RT+LS+CV N+N+++ + AA ++L + E+ T +LL N Y++ GRWD
Sbjct: 852 PYVEDNVELWRTLLSACVINKNLKVGVRAAEEVLRFNAEDGPTLILLSNLYAAAGRWDEV 911
Query: 440 AELRR 426
AE+RR
Sbjct: 912 AEIRR 916
Score = 45.4 bits (106), Expect(3) = 1e-18
Identities = 23/40 (57%), Positives = 28/40 (70%)
Frame = -3
Query: 750 GKVLLSLMMETGLTSRPKHYSVMICLLSRALLLIEAEKMI 631
GK+L + M GL PKHYS M+ LLSRA LL EAE++I
Sbjct: 809 GKLLWNYMSSIGLVPGPKHYSCMVTLLSRAALLEEAEEII 848
Score = 28.9 bits (63), Expect(3) = 1e-18
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = -2
Query: 424 LVLEKDPGLSWIEIMKNNL 368
L++EK+PGLSWIE KN++
Sbjct: 921 LIMEKEPGLSWIE-AKNDI 938
>ref|XP_002307242.1| predicted protein [Populus trichocarpa] gi|222856691|gb|EEE94238.1|
predicted protein [Populus trichocarpa]
Length = 561
Score = 68.2 bits (165), Expect(3) = 1e-18
Identities = 32/64 (50%), Positives = 47/64 (73%)
Frame = -1
Query: 617 YSSANLEMLRTVLSSCVCNRNVEIRISAA*QILCIHDEEKATNVLLINFYSSIGRWDVFA 438
YS +LE+ RT+LSSCV RN++I + AA +IL + E+ AT++LL N Y++ GRW+ A
Sbjct: 478 YSKDHLELWRTLLSSCVNKRNLKIGVRAAEEILQLEPEDSATHILLSNLYAAAGRWEAVA 537
Query: 437 ELRR 426
E+RR
Sbjct: 538 EMRR 541
Score = 41.6 bits (96), Expect(3) = 1e-18
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = -3
Query: 750 GKVLLSLMMETGLTSRPKHYSVMICLLSRALLLIEAEKMII 628
GK+L S + + + PKHYS M+ LLSRA LL EAE++II
Sbjct: 434 GKLLWSHIKKNDVIPGPKHYSCMVSLLSRAGLLDEAEELII 474
Score = 29.3 bits (64), Expect(3) = 1e-18
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = -2
Query: 424 LVLEKDPGLSWIE 386
L++EKDPGLSWIE
Sbjct: 546 LMIEKDPGLSWIE 558
>ref|XP_002522354.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223538432|gb|EEF40038.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 704
Score = 59.7 bits (143), Expect(3) = 3e-17
Identities = 30/63 (47%), Positives = 42/63 (66%)
Frame = -1
Query: 614 SSANLEMLRTVLSSCVCNRNVEIRISAA*QILCIHDEEKATNVLLINFYSSIGRWDVFAE 435
S +L++ RT+LSSCV RN+ + AA Q+L + E+ AT +LL N Y+ GRWD AE
Sbjct: 579 SEEHLKLWRTLLSSCVNRRNLTVGARAAKQVLRLDPEDSATYILLSNLYAVTGRWDGVAE 638
Query: 434 LRR 426
LR+
Sbjct: 639 LRK 641
Score = 45.4 bits (106), Expect(3) = 3e-17
Identities = 23/40 (57%), Positives = 28/40 (70%)
Frame = -3
Query: 750 GKVLLSLMMETGLTSRPKHYSVMICLLSRALLLIEAEKMI 631
GK L M + G+T PKHYS M+ LLSRA LL EAE++I
Sbjct: 534 GKFLWDYMKKNGITPGPKHYSCMVSLLSRAGLLDEAEELI 573
Score = 29.3 bits (64), Expect(3) = 3e-17
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = -2
Query: 424 LVLEKDPGLSWIEIMKNNL 368
L+LEKDPG+SWIE KN++
Sbjct: 646 LMLEKDPGVSWIE-AKNDI 663
>ref|XP_003538826.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g50420-like [Glycine max]
Length = 715
Score = 62.0 bits (149), Expect(3) = 7e-15
Identities = 30/65 (46%), Positives = 44/65 (67%)
Frame = -1
Query: 620 PYSSANLEMLRTVLSSCVCNRNVEIRISAA*QILCIHDEEKATNVLLINFYSSIGRWDVF 441
PY NLE+ RT+LS+CV N+N ++ I AA ++L + E+ T VLL N Y++ +WD
Sbjct: 582 PYIEDNLELWRTLLSACVINKNFKVGIHAAEEVLRLKAEDGPTLVLLSNLYAAARKWDKV 641
Query: 440 AELRR 426
AE+RR
Sbjct: 642 AEIRR 646
Score = 38.5 bits (88), Expect(3) = 7e-15
Identities = 21/40 (52%), Positives = 25/40 (62%)
Frame = -3
Query: 750 GKVLLSLMMETGLTSRPKHYSVMICLLSRALLLIEAEKMI 631
GK L + M GL KHYS M+ L SRA LL EAE++I
Sbjct: 539 GKFLWNYMNSIGLIPGLKHYSCMVTLFSRAALLEEAEEII 578
Score = 25.8 bits (55), Expect(3) = 7e-15
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = -2
Query: 424 LVLEKDPGLSWIEIMKNNL 368
L+L+K PGLSWIE KN++
Sbjct: 651 LMLDKYPGLSWIE-AKNDI 668
>ref|XP_004148057.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g50420-like [Cucumis sativus]
Length = 696
Score = 62.4 bits (150), Expect(3) = 1e-13
Identities = 27/65 (41%), Positives = 46/65 (70%)
Frame = -1
Query: 620 PYSSANLEMLRTVLSSCVCNRNVEIRISAA*QILCIHDEEKATNVLLINFYSSIGRWDVF 441
P+++ + E+ RT+LSSCV +N+ + ++AA Q+L I E+ A ++LL N Y++ G+WD
Sbjct: 573 PFANNDPELWRTLLSSCVVKKNLRVGVNAAKQVLRIDPEDSAAHILLSNLYAAAGKWDGV 632
Query: 440 AELRR 426
E+RR
Sbjct: 633 VEMRR 637
Score = 34.7 bits (78), Expect(3) = 1e-13
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = -3
Query: 750 GKVLLSLMMETGLTSRPKHYSVMICLLSRALLLIEAEKMI 631
G+ L + M E + KHYS M+ LLS A + EAE+MI
Sbjct: 530 GQFLWNYMKECNIIPNSKHYSCMVSLLSGAGFMDEAEEMI 569
Score = 24.6 bits (52), Expect(3) = 1e-13
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -2
Query: 427 ELVLEKDPGLSWIE 386
E ++ KDPG+SWIE
Sbjct: 641 EKMVGKDPGVSWIE 654