BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00034928
         (684 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA22288.1| polyprotein [Oryza australiensis]                     193   2e-47
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap...   173   2e-41
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e...   172   4e-41
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc...   172   7e-41
gb|ADB85430.1| putative retrotransposon protein [Phyllostachys e...   171   9e-41

>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score =  193 bits (491), Expect = 2e-47
 Identities = 104/226 (46%), Positives = 137/226 (60%)
 Frame = +2

Query: 5   YVIDVPRPEPLPEGATHAQQNIYQKHIDDDTDVTSLMLATMSPELQKQHEHMDAYVMIEH 184
           YV++VP PE LP  AT   +  ++KH +D  D++ LMLATMSPELQKQ+E  DA+  I+ 
Sbjct: 44  YVLEVPYPEELPNNATATARRGFEKHTNDALDISCLMLATMSPELQKQYESSDAHTTIQG 103

Query: 185 LKRMFEGQARQERFDTSKALYACKQDDRDPVGPHVLKMIGYMEYLATLSSAISPEGQTDL 364
           L+ MFE QAR ERF+TSK+L+AC+  + +PV PHV+KMIGY+E L  L   +S E  TD+
Sbjct: 104 LRGMFENQARDERFNTSKSLFACRLVEGNPVSPHVIKMIGYIESLEKLGFPLSQELATDV 163

Query: 365 ILQSLNSNYAQFVMNYNMNEIDKTLTELLAMLKTAETNIQKASPAPIMMVNXXXXXXXXX 544
           ILQSL  ++  F++NY+MN +D+TL EL  MLKT E +IQK     +MM N         
Sbjct: 164 ILQSLPPSFEPFILNYHMNNMDRTLAELHGMLKTVEESIQKNGHHVMMMQN---AKRKPP 220

Query: 545 XXXXXXXXXXPADPKPFVKKALKPKGGVQKAKGDCHYCKKPGHWKR 682
                       D       A K K G   +   C YCK+ GHWKR
Sbjct: 221 VKKLCTKRKLTPDEIASASNAKKGKKGSAASDAVCFYCKETGHWKR 266


>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
           gi|62701883|gb|AAX92956.1| retrotransposon protein,
           putative, Ty1-copia sub-class [Oryza sativa Japonica
           Group] gi|108864259|gb|ABA92827.2| retrotransposon
           protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1184

 Score =  173 bits (439), Expect = 2e-41
 Identities = 97/226 (42%), Positives = 137/226 (60%)
 Frame = +2

Query: 5   YVIDVPRPEPLPEGATHAQQNIYQKHIDDDTDVTSLMLATMSPELQKQHEHMDAYVMIEH 184
           +V+  P P  LP  A  AQ+  ++K  +D  D++ LMLATMSPELQ+Q+E +DA+ +I  
Sbjct: 43  FVLTQPFPADLPNNAPAAQRREHEKRCNDYLDISCLMLATMSPELQRQYEALDAHTIITG 102

Query: 185 LKRMFEGQARQERFDTSKALYACKQDDRDPVGPHVLKMIGYMEYLATLSSAISPEGQTDL 364
           L+ MFE QAR +RF+TSK+L+AC+  + +PV PHV+KMIGY E L  L   +S E  TDL
Sbjct: 103 LRNMFEDQARAKRFNTSKSLFACRLAEGNPVSPHVIKMIGYNETLEKLGFPLSQELATDL 162

Query: 365 ILQSLNSNYAQFVMNYNMNEIDKTLTELLAMLKTAETNIQKASPAPIMMVNXXXXXXXXX 544
           ILQSL  ++  F++N+NMN +++TLT+L  MLKTAE +I+K S   ++M           
Sbjct: 163 ILQSLPPSFEPFILNFNMNNMNRTLTKLPGMLKTAEESIKKNSNHVMVMHKR-------- 214

Query: 545 XXXXXXXXXXPADPKPFVKKALKPKGGVQKAKGDCHYCKKPGHWKR 682
                         KP  KK+   K        +C +CK+ GHWKR
Sbjct: 215 --------------KPNNKKSGPAK------DAECFFCKEAGHWKR 240


>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 1313

 Score =  172 bits (437), Expect = 4e-41
 Identities = 95/226 (42%), Positives = 137/226 (60%)
 Frame = +2

Query: 5   YVIDVPRPEPLPEGATHAQQNIYQKHIDDDTDVTSLMLATMSPELQKQHEHMDAYVMIEH 184
           +V++ P P+   + A    ++ Y+K  D+  DV+ LMLA M+ +LQKQ E+++AY MI  
Sbjct: 130 HVLEEPIPDVPADNAAATLKSAYKKACDESLDVSCLMLAAMNSDLQKQFENIEAYDMIVA 189

Query: 185 LKRMFEGQARQERFDTSKALYACKQDDRDPVGPHVLKMIGYMEYLATLSSAISPEGQTDL 364
           LK MFE QAR +RF+ SK L++CK  +  PV PH++KM+GY + L  L   +S E  TDL
Sbjct: 190 LKGMFETQARTKRFEISKNLFSCKLAEGSPVSPHMIKMVGYTQSLEKLGFPLSQELATDL 249

Query: 365 ILQSLNSNYAQFVMNYNMNEIDKTLTELLAMLKTAETNIQKASPAPIMMVNXXXXXXXXX 544
           IL SL ++Y QF++N++MN +DK LTEL  +LKTAE +I+K + + +MMV          
Sbjct: 250 ILASLPASYGQFILNFHMNGLDKNLTELHMLLKTAEDSIKKIN-SHVMMVQKSTSFKKKA 308

Query: 545 XXXXXXXXXXPADPKPFVKKALKPKGGVQKAKGDCHYCKKPGHWKR 682
                       D     K  LK K G  + + +C YCK+PGHWKR
Sbjct: 309 RTWVKGKGKKVLDGIQTNKPKLKTKSGPTQ-ENECFYCKEPGHWKR 353


>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1248

 Score =  172 bits (435), Expect = 7e-41
 Identities = 96/226 (42%), Positives = 136/226 (60%)
 Frame = +2

Query: 5   YVIDVPRPEPLPEGATHAQQNIYQKHIDDDTDVTSLMLATMSPELQKQHEHMDAYVMIEH 184
           +V+  P P  LP  A  AQ+  ++K  +D  D++ LMLATMSPELQ+Q+E +DA+ +I  
Sbjct: 110 FVLTEPFPANLPNNAPAAQRREHEKRCNDYLDISCLMLATMSPELQRQYEALDAHTIITG 169

Query: 185 LKRMFEGQARQERFDTSKALYACKQDDRDPVGPHVLKMIGYMEYLATLSSAISPEGQTDL 364
           L+ MFE QAR ERF+TSK+L+AC+  + + V PHV+KMIGY E L  L   +S E  TDL
Sbjct: 170 LRNMFEDQARAERFNTSKSLFACRLAEGNLVSPHVIKMIGYTESLDKLGFPLSRELATDL 229

Query: 365 ILQSLNSNYAQFVMNYNMNEIDKTLTELLAMLKTAETNIQKASPAPIMMVNXXXXXXXXX 544
           ILQSL  ++  F+MN+NMN +++TL EL  MLKTAE +I+K S   ++M           
Sbjct: 230 ILQSLPPSFEPFIMNFNMNNLNRTLAELHGMLKTAEESIKKNSNHVMVMHKRKPNNKKSG 289

Query: 545 XXXXXXXXXXPADPKPFVKKALKPKGGVQKAKGDCHYCKKPGHWKR 682
                      +      K  ++  G  + A  +C +CK+ GHWKR
Sbjct: 290 QKRKLNSDEITSTSNS--KTKVQKTGSAKDA--ECFFCKETGHWKR 331


>gb|ADB85430.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 896

 Score =  171 bits (434), Expect = 9e-41
 Identities = 96/226 (42%), Positives = 132/226 (58%)
 Frame = +2

Query: 5   YVIDVPRPEPLPEGATHAQQNIYQKHIDDDTDVTSLMLATMSPELQKQHEHMDAYVMIEH 184
           +V++ P P+   E A  A +  Y+K  D+  DV+ LMLA M+ +LQKQ E+++AY MI  
Sbjct: 47  HVLEEPIPDVPTENAAAAIKTAYKKACDESLDVSCLMLAAMNSDLQKQFENIEAYDMIVA 106

Query: 185 LKRMFEGQARQERFDTSKALYACKQDDRDPVGPHVLKMIGYMEYLATLSSAISPEGQTDL 364
           LK MFE QAR ERF+ SK L+ CK  +  PV PHV+KM+GY + L  L   +S E  TDL
Sbjct: 107 LKGMFETQARTERFEISKNLFGCKLAEGGPVSPHVIKMVGYTQSLEKLGFPLSQELATDL 166

Query: 365 ILQSLNSNYAQFVMNYNMNEIDKTLTELLAMLKTAETNIQKASPAPIMMVNXXXXXXXXX 544
           IL SL  +Y QF++N++MN +DK LTEL  MLKTAE +++K +   IM+           
Sbjct: 167 ILASLPESYGQFILNFHMNGLDKNLTELHMMLKTAEGSVKKCNNHVIMVQKSTSFKKKAK 226

Query: 545 XXXXXXXXXXPADPKPFVKKALKPKGGVQKAKGDCHYCKKPGHWKR 682
                      +D     K   K K G  + + +C YCK+ GHWKR
Sbjct: 227 TWIKKKGKAKVSDKIQTDKPKTKTKSGPTQ-ENECFYCKELGHWKR 271