BLASTX nr result
ID: Cnidium21_contig00034928
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Cnidium21_contig00034928 (684 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value dbj|BAA22288.1| polyprotein [Oryza australiensis] 193 2e-47 gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap... 173 2e-41 gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e... 172 4e-41 gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc... 172 7e-41 gb|ADB85430.1| putative retrotransposon protein [Phyllostachys e... 171 9e-41 >dbj|BAA22288.1| polyprotein [Oryza australiensis] Length = 1317 Score = 193 bits (491), Expect = 2e-47 Identities = 104/226 (46%), Positives = 137/226 (60%) Frame = +2 Query: 5 YVIDVPRPEPLPEGATHAQQNIYQKHIDDDTDVTSLMLATMSPELQKQHEHMDAYVMIEH 184 YV++VP PE LP AT + ++KH +D D++ LMLATMSPELQKQ+E DA+ I+ Sbjct: 44 YVLEVPYPEELPNNATATARRGFEKHTNDALDISCLMLATMSPELQKQYESSDAHTTIQG 103 Query: 185 LKRMFEGQARQERFDTSKALYACKQDDRDPVGPHVLKMIGYMEYLATLSSAISPEGQTDL 364 L+ MFE QAR ERF+TSK+L+AC+ + +PV PHV+KMIGY+E L L +S E TD+ Sbjct: 104 LRGMFENQARDERFNTSKSLFACRLVEGNPVSPHVIKMIGYIESLEKLGFPLSQELATDV 163 Query: 365 ILQSLNSNYAQFVMNYNMNEIDKTLTELLAMLKTAETNIQKASPAPIMMVNXXXXXXXXX 544 ILQSL ++ F++NY+MN +D+TL EL MLKT E +IQK +MM N Sbjct: 164 ILQSLPPSFEPFILNYHMNNMDRTLAELHGMLKTVEESIQKNGHHVMMMQN---AKRKPP 220 Query: 545 XXXXXXXXXXPADPKPFVKKALKPKGGVQKAKGDCHYCKKPGHWKR 682 D A K K G + C YCK+ GHWKR Sbjct: 221 VKKLCTKRKLTPDEIASASNAKKGKKGSAASDAVCFYCKETGHWKR 266 >gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group] gi|62701883|gb|AAX92956.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa Japonica Group] gi|108864259|gb|ABA92827.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group] Length = 1184 Score = 173 bits (439), Expect = 2e-41 Identities = 97/226 (42%), Positives = 137/226 (60%) Frame = +2 Query: 5 YVIDVPRPEPLPEGATHAQQNIYQKHIDDDTDVTSLMLATMSPELQKQHEHMDAYVMIEH 184 +V+ P P LP A AQ+ ++K +D D++ LMLATMSPELQ+Q+E +DA+ +I Sbjct: 43 FVLTQPFPADLPNNAPAAQRREHEKRCNDYLDISCLMLATMSPELQRQYEALDAHTIITG 102 Query: 185 LKRMFEGQARQERFDTSKALYACKQDDRDPVGPHVLKMIGYMEYLATLSSAISPEGQTDL 364 L+ MFE QAR +RF+TSK+L+AC+ + +PV PHV+KMIGY E L L +S E TDL Sbjct: 103 LRNMFEDQARAKRFNTSKSLFACRLAEGNPVSPHVIKMIGYNETLEKLGFPLSQELATDL 162 Query: 365 ILQSLNSNYAQFVMNYNMNEIDKTLTELLAMLKTAETNIQKASPAPIMMVNXXXXXXXXX 544 ILQSL ++ F++N+NMN +++TLT+L MLKTAE +I+K S ++M Sbjct: 163 ILQSLPPSFEPFILNFNMNNMNRTLTKLPGMLKTAEESIKKNSNHVMVMHKR-------- 214 Query: 545 XXXXXXXXXXPADPKPFVKKALKPKGGVQKAKGDCHYCKKPGHWKR 682 KP KK+ K +C +CK+ GHWKR Sbjct: 215 --------------KPNNKKSGPAK------DAECFFCKEAGHWKR 240 >gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis] Length = 1313 Score = 172 bits (437), Expect = 4e-41 Identities = 95/226 (42%), Positives = 137/226 (60%) Frame = +2 Query: 5 YVIDVPRPEPLPEGATHAQQNIYQKHIDDDTDVTSLMLATMSPELQKQHEHMDAYVMIEH 184 +V++ P P+ + A ++ Y+K D+ DV+ LMLA M+ +LQKQ E+++AY MI Sbjct: 130 HVLEEPIPDVPADNAAATLKSAYKKACDESLDVSCLMLAAMNSDLQKQFENIEAYDMIVA 189 Query: 185 LKRMFEGQARQERFDTSKALYACKQDDRDPVGPHVLKMIGYMEYLATLSSAISPEGQTDL 364 LK MFE QAR +RF+ SK L++CK + PV PH++KM+GY + L L +S E TDL Sbjct: 190 LKGMFETQARTKRFEISKNLFSCKLAEGSPVSPHMIKMVGYTQSLEKLGFPLSQELATDL 249 Query: 365 ILQSLNSNYAQFVMNYNMNEIDKTLTELLAMLKTAETNIQKASPAPIMMVNXXXXXXXXX 544 IL SL ++Y QF++N++MN +DK LTEL +LKTAE +I+K + + +MMV Sbjct: 250 ILASLPASYGQFILNFHMNGLDKNLTELHMLLKTAEDSIKKIN-SHVMMVQKSTSFKKKA 308 Query: 545 XXXXXXXXXXPADPKPFVKKALKPKGGVQKAKGDCHYCKKPGHWKR 682 D K LK K G + + +C YCK+PGHWKR Sbjct: 309 RTWVKGKGKKVLDGIQTNKPKLKTKSGPTQ-ENECFYCKEPGHWKR 353 >gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group] Length = 1248 Score = 172 bits (435), Expect = 7e-41 Identities = 96/226 (42%), Positives = 136/226 (60%) Frame = +2 Query: 5 YVIDVPRPEPLPEGATHAQQNIYQKHIDDDTDVTSLMLATMSPELQKQHEHMDAYVMIEH 184 +V+ P P LP A AQ+ ++K +D D++ LMLATMSPELQ+Q+E +DA+ +I Sbjct: 110 FVLTEPFPANLPNNAPAAQRREHEKRCNDYLDISCLMLATMSPELQRQYEALDAHTIITG 169 Query: 185 LKRMFEGQARQERFDTSKALYACKQDDRDPVGPHVLKMIGYMEYLATLSSAISPEGQTDL 364 L+ MFE QAR ERF+TSK+L+AC+ + + V PHV+KMIGY E L L +S E TDL Sbjct: 170 LRNMFEDQARAERFNTSKSLFACRLAEGNLVSPHVIKMIGYTESLDKLGFPLSRELATDL 229 Query: 365 ILQSLNSNYAQFVMNYNMNEIDKTLTELLAMLKTAETNIQKASPAPIMMVNXXXXXXXXX 544 ILQSL ++ F+MN+NMN +++TL EL MLKTAE +I+K S ++M Sbjct: 230 ILQSLPPSFEPFIMNFNMNNLNRTLAELHGMLKTAEESIKKNSNHVMVMHKRKPNNKKSG 289 Query: 545 XXXXXXXXXXPADPKPFVKKALKPKGGVQKAKGDCHYCKKPGHWKR 682 + K ++ G + A +C +CK+ GHWKR Sbjct: 290 QKRKLNSDEITSTSNS--KTKVQKTGSAKDA--ECFFCKETGHWKR 331 >gb|ADB85430.1| putative retrotransposon protein [Phyllostachys edulis] Length = 896 Score = 171 bits (434), Expect = 9e-41 Identities = 96/226 (42%), Positives = 132/226 (58%) Frame = +2 Query: 5 YVIDVPRPEPLPEGATHAQQNIYQKHIDDDTDVTSLMLATMSPELQKQHEHMDAYVMIEH 184 +V++ P P+ E A A + Y+K D+ DV+ LMLA M+ +LQKQ E+++AY MI Sbjct: 47 HVLEEPIPDVPTENAAAAIKTAYKKACDESLDVSCLMLAAMNSDLQKQFENIEAYDMIVA 106 Query: 185 LKRMFEGQARQERFDTSKALYACKQDDRDPVGPHVLKMIGYMEYLATLSSAISPEGQTDL 364 LK MFE QAR ERF+ SK L+ CK + PV PHV+KM+GY + L L +S E TDL Sbjct: 107 LKGMFETQARTERFEISKNLFGCKLAEGGPVSPHVIKMVGYTQSLEKLGFPLSQELATDL 166 Query: 365 ILQSLNSNYAQFVMNYNMNEIDKTLTELLAMLKTAETNIQKASPAPIMMVNXXXXXXXXX 544 IL SL +Y QF++N++MN +DK LTEL MLKTAE +++K + IM+ Sbjct: 167 ILASLPESYGQFILNFHMNGLDKNLTELHMMLKTAEGSVKKCNNHVIMVQKSTSFKKKAK 226 Query: 545 XXXXXXXXXXPADPKPFVKKALKPKGGVQKAKGDCHYCKKPGHWKR 682 +D K K K G + + +C YCK+ GHWKR Sbjct: 227 TWIKKKGKAKVSDKIQTDKPKTKTKSGPTQ-ENECFYCKELGHWKR 271