BLASTX nr result

ID: Cnidium21_contig00034778 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00034778
         (368 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_174954.1| General transcription factor 2-related zinc fin...   142   3e-32
gb|AAF82236.1|AC069143_12 Contains similarity to a transposable ...   140   8e-32
ref|NP_173360.1| TTF-type zinc finger protein with HAT dimerizat...   140   8e-32
ref|NP_001172871.1| Os02g0234000 [Oryza sativa Japonica Group] g...   139   3e-31
ref|NP_192704.1| uncharacterized protein [Arabidopsis thaliana] ...   137   9e-31

>ref|NP_174954.1| General transcription factor 2-related zinc finger protein
           [Arabidopsis thaliana] gi|332193792|gb|AEE31913.1|
           General transcription factor 2-related zinc finger
           protein [Arabidopsis thaliana]
          Length = 496

 Score =  142 bits (358), Expect = 3e-32
 Identities = 66/122 (54%), Positives = 92/122 (75%)
 Frame = +3

Query: 3   ILNAISLVKSTKRQLQKFRIDGWVPLLEKIFSFCDKHDIEKLNMTEPYINPKNRRQKTGI 182
           ILN +SLVKSTK+QL K R DGW  L+ ++FSFC KHDIE + M   ++NP+N R+++ +
Sbjct: 345 ILNPMSLVKSTKQQLCKLRDDGWDSLVNEVFSFCKKHDIELVIMDGEFVNPRNPRKRSNM 404

Query: 183 TYEHYYCFDCFNVVVDMQLAEFDDRFNEVNSELLICMAALDPRDSFVAFDSLQLTRLVDF 362
           T  H+Y  +CF  ++DMQ+ EF+DRF+EVN+ELL C+A+L P DSF  FD L++ RL +F
Sbjct: 405 TNFHHYQVECFYTILDMQIQEFNDRFDEVNTELLSCVASLSPIDSFHEFDQLKVLRLSEF 464

Query: 363 YP 368
           YP
Sbjct: 465 YP 466


>gb|AAF82236.1|AC069143_12 Contains similarity to a transposable element Tip100 protein for
           transposase from Ipomoea purpurea gb|4063769 and is a
           member of the transmembrane 4 family PF|00335
           [Arabidopsis thaliana]
          Length = 811

 Score =  140 bits (354), Expect = 8e-32
 Identities = 70/122 (57%), Positives = 88/122 (72%)
 Frame = +3

Query: 3   ILNAISLVKSTKRQLQKFRIDGWVPLLEKIFSFCDKHDIEKLNMTEPYINPKNRRQKTGI 182
           ILNAISLVK+TK QLQK R DGW   + K+ SF +K++   L M E +++ +  R+KTGI
Sbjct: 562 ILNAISLVKTTKCQLQKVRDDGWDAFMAKVSSFSEKNNTGMLKMEEEFVDSRRPRKKTGI 621

Query: 183 TYEHYYCFDCFNVVVDMQLAEFDDRFNEVNSELLICMAALDPRDSFVAFDSLQLTRLVDF 362
           T  H+Y  DCF  V+DMQL EF+DRF+EVNSELLICM++L P DSF  FD   L RL +F
Sbjct: 622 TNLHHYKVDCFYTVLDMQLQEFNDRFDEVNSELLICMSSLSPIDSFRQFDKSMLVRLTEF 681

Query: 363 YP 368
           YP
Sbjct: 682 YP 683


>ref|NP_173360.1| TTF-type zinc finger protein with HAT dimerization domain
           [Arabidopsis thaliana] gi|332191703|gb|AEE29824.1|
           TTF-type zinc finger protein with HAT dimerization
           domain [Arabidopsis thaliana]
          Length = 769

 Score =  140 bits (354), Expect = 8e-32
 Identities = 70/122 (57%), Positives = 88/122 (72%)
 Frame = +3

Query: 3   ILNAISLVKSTKRQLQKFRIDGWVPLLEKIFSFCDKHDIEKLNMTEPYINPKNRRQKTGI 182
           ILNAISLVK+TK QLQK R DGW   + K+ SF +K++   L M E +++ +  R+KTGI
Sbjct: 520 ILNAISLVKTTKCQLQKVRDDGWDAFMAKVSSFSEKNNTGMLKMEEEFVDSRRPRKKTGI 579

Query: 183 TYEHYYCFDCFNVVVDMQLAEFDDRFNEVNSELLICMAALDPRDSFVAFDSLQLTRLVDF 362
           T  H+Y  DCF  V+DMQL EF+DRF+EVNSELLICM++L P DSF  FD   L RL +F
Sbjct: 580 TNLHHYKVDCFYTVLDMQLQEFNDRFDEVNSELLICMSSLSPIDSFRQFDKSMLVRLTEF 639

Query: 363 YP 368
           YP
Sbjct: 640 YP 641


>ref|NP_001172871.1| Os02g0234000 [Oryza sativa Japonica Group]
           gi|255670746|dbj|BAH91600.1| Os02g0234000 [Oryza sativa
           Japonica Group]
          Length = 949

 Score =  139 bits (349), Expect = 3e-31
 Identities = 67/122 (54%), Positives = 83/122 (68%)
 Frame = +3

Query: 3   ILNAISLVKSTKRQLQKFRIDGWVPLLEKIFSFCDKHDIEKLNMTEPYINPKNRRQKTGI 182
           I+NA+  VKST+  L   R DGW  LL  +++FCDK+DI KL M E Y+NPK +RQKTGI
Sbjct: 514 IVNAVKCVKSTRCHLDDLRRDGWENLLGDVYAFCDKYDIIKLEMGEAYVNPKKQRQKTGI 573

Query: 183 TYEHYYCFDCFNVVVDMQLAEFDDRFNEVNSELLICMAALDPRDSFVAFDSLQLTRLVDF 362
           T +H+Y  DCFN V+D  L E D RFNE +SELL+C AA  PR+SF  F+   L RL   
Sbjct: 574 TNQHHYEVDCFNDVIDWLLQELDSRFNETSSELLLCSAAFSPRESFHDFNVENLMRLAKL 633

Query: 363 YP 368
           YP
Sbjct: 634 YP 635


>ref|NP_192704.1| uncharacterized protein [Arabidopsis thaliana]
           gi|4538896|emb|CAB39633.1| putative protein [Arabidopsis
           thaliana] gi|7267661|emb|CAB78089.1| putative protein
           [Arabidopsis thaliana] gi|332657378|gb|AEE82778.1|
           uncharacterized protein [Arabidopsis thaliana]
          Length = 664

 Score =  137 bits (345), Expect = 9e-31
 Identities = 67/122 (54%), Positives = 87/122 (71%)
 Frame = +3

Query: 3   ILNAISLVKSTKRQLQKFRIDGWVPLLEKIFSFCDKHDIEKLNMTEPYINPKNRRQKTGI 182
           ILN ISLVK+TK QLQK R DGW   + ++ SF +K++   L M E +++ +  R+K+GI
Sbjct: 464 ILNVISLVKTTKCQLQKVRDDGWDAFMAEVSSFSEKNNTAMLKMEEEFVDSRRPRKKSGI 523

Query: 183 TYEHYYCFDCFNVVVDMQLAEFDDRFNEVNSELLICMAALDPRDSFVAFDSLQLTRLVDF 362
           T  H+Y  DCF  V+DMQL EF+DRF+EVNSELLICM++L P DSF  FD   L RL +F
Sbjct: 524 TNLHHYKVDCFYTVLDMQLQEFNDRFDEVNSELLICMSSLSPIDSFCQFDKSMLVRLTEF 583

Query: 363 YP 368
           YP
Sbjct: 584 YP 585


Top