BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00034736
         (419 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI21137.3| unnamed protein product [Vitis vinifera]              199   2e-49
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...   199   2e-49
gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode...   196   2e-48
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...   179   3e-43
ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerase D sub...   174   7e-42

>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score =  199 bits (505), Expect = 2e-49
 Identities = 92/135 (68%), Positives = 113/135 (83%)
 Frame = +3

Query: 3   DKAVCKEIRQEIPIGTLPVMVNSDLCWMKKAKQGDCDFDHGGYFIIKGAEKTFVAQEQIC 182
           +K V  E  ++I IG +PVMV S+LCWM   ++GDC++DHGGYF+IKGAEKTF+AQEQIC
Sbjct: 216 EKKVIFEDNRDILIGRIPVMVKSELCWMNGVERGDCEYDHGGYFLIKGAEKTFIAQEQIC 275

Query: 183 LKRLWLASNPSWMASYRHAFKRKRVYVKLLDPKSDDIGGGEKILTVHFLGMEIPIWILFF 362
           LKRLW++SNP+WM +YR  +KRKRVYVKL  PK ++  GGEK+LTV+F   EIPIWILFF
Sbjct: 276 LKRLWVSSNPTWMVAYRPIWKRKRVYVKLEPPKDENNRGGEKVLTVYFSSTEIPIWILFF 335

Query: 363 ALGASSDKEVVNLID 407
           ALGASSDKEVV+LID
Sbjct: 336 ALGASSDKEVVDLID 350


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
           vinifera]
          Length = 1198

 Score =  199 bits (505), Expect = 2e-49
 Identities = 92/135 (68%), Positives = 113/135 (83%)
 Frame = +3

Query: 3   DKAVCKEIRQEIPIGTLPVMVNSDLCWMKKAKQGDCDFDHGGYFIIKGAEKTFVAQEQIC 182
           +K V  E  ++I IG +PVMV S+LCWM   ++GDC++DHGGYF+IKGAEKTF+AQEQIC
Sbjct: 180 EKKVIFEDNRDILIGRIPVMVKSELCWMNGVERGDCEYDHGGYFLIKGAEKTFIAQEQIC 239

Query: 183 LKRLWLASNPSWMASYRHAFKRKRVYVKLLDPKSDDIGGGEKILTVHFLGMEIPIWILFF 362
           LKRLW++SNP+WM +YR  +KRKRVYVKL  PK ++  GGEK+LTV+F   EIPIWILFF
Sbjct: 240 LKRLWVSSNPTWMVAYRPIWKRKRVYVKLEPPKDENNRGGEKVLTVYFSSTEIPIWILFF 299

Query: 363 ALGASSDKEVVNLID 407
           ALGASSDKEVV+LID
Sbjct: 300 ALGASSDKEVVDLID 314


>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron
           macrophyllum]
          Length = 1019

 Score =  196 bits (497), Expect = 2e-48
 Identities = 89/137 (64%), Positives = 110/137 (80%)
 Frame = +3

Query: 3   DKAVCKEIRQEIPIGTLPVMVNSDLCWMKKAKQGDCDFDHGGYFIIKGAEKTFVAQEQIC 182
           DK    E  +++ IG +PVM+ SDLCWM   ++ DCDFDHGGYF+IKGAEKTF+AQEQIC
Sbjct: 4   DKDPISEDNRDVIIGRIPVMLKSDLCWMNGVEKSDCDFDHGGYFLIKGAEKTFIAQEQIC 63

Query: 183 LKRLWLASNPSWMASYRHAFKRKRVYVKLLDPKSDDIGGGEKILTVHFLGMEIPIWILFF 362
           LKRLW++++PSW  +YR   KRKRVY+KL  PK + I GGEK+L+V+F  +E PIWILFF
Sbjct: 64  LKRLWVSNSPSWTVAYRDVSKRKRVYIKLEPPKREHIRGGEKVLSVYFSAVEFPIWILFF 123

Query: 363 ALGASSDKEVVNLIDVE 413
           ALGASSDKEVVNLID +
Sbjct: 124 ALGASSDKEVVNLIDCD 140


>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score =  179 bits (453), Expect = 3e-43
 Identities = 86/138 (62%), Positives = 109/138 (78%), Gaps = 1/138 (0%)
 Frame = +3

Query: 3   DKAVCKEIRQEIPIGTLPVMVNSDLCWMKKAKQGDCDFDHGGYFIIKGAEKTFVAQEQIC 182
           DK    E ++++ IG +PVMVNS+LCWM    + DC+FDHGGYFI KGAEKTF+AQEQ+C
Sbjct: 197 DKEWEVEGKRDVLIGRIPVMVNSELCWMNGVDKLDCEFDHGGYFIAKGAEKTFIAQEQLC 256

Query: 183 LKRLWLASNPSWMASYRHAFKRKRVYVKLLDP-KSDDIGGGEKILTVHFLGMEIPIWILF 359
           LKRLW+++NP+WM  YR   KRKRVY+KL +  K + I GGEK L+V+ L  E+PIW+LF
Sbjct: 257 LKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEHIKGGEKALSVYILA-EMPIWVLF 315

Query: 360 FALGASSDKEVVNLIDVE 413
           FALG SSD+EVVNLIDV+
Sbjct: 316 FALGVSSDREVVNLIDVD 333


>ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Glycine
           max]
          Length = 1205

 Score =  174 bits (441), Expect = 7e-42
 Identities = 78/135 (57%), Positives = 108/135 (80%), Gaps = 1/135 (0%)
 Frame = +3

Query: 3   DKAVCKEIRQEIPIGTLPVMVNSDLCWMKKAKQGDCDFDHGGYFIIKGAEKTFVAQEQIC 182
           D+ + KE  +EI IG LPVMV SDLCWMK A++ D +FDHGGYFI+KGAEKTF+AQEQ+ 
Sbjct: 187 DREIMKEDEREIIIGRLPVMVKSDLCWMKDAEKDDDEFDHGGYFIVKGAEKTFIAQEQLY 246

Query: 183 LKRLWLASNPSWMASYRHAFKRKRVYVKLL-DPKSDDIGGGEKILTVHFLGMEIPIWILF 359
           LKRLW+ ++P WM +Y+   KR R+ +KL+ + +S+++  G+  LTV+FL +E+P+W+LF
Sbjct: 247 LKRLWVMNSPGWMIAYKSQMKRNRMVIKLVGNSRSEEVENGDMCLTVYFLSVEVPVWVLF 306

Query: 360 FALGASSDKEVVNLI 404
           FALG SSDKE+V+LI
Sbjct: 307 FALGVSSDKEIVDLI 321