BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00034572
         (613 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   216   3e-54
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   139   3e-31
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja...   136   3e-30
gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subc...   136   3e-30
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]     134   1e-29

>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  216 bits (550), Expect = 3e-54
 Identities = 112/205 (54%), Positives = 141/205 (68%), Gaps = 1/205 (0%)
 Frame = -1

Query: 613  RAKKGVFVGYGDGIKGYRIWSPSENRVILSRNVVFDENSMFNPTVKSIIVSESGSVEKQV 434
            RAKKGVFVGYGDG+KG+RIWSP+E RVI+SRNVVFDE+ +    VK    SE+GS++KQV
Sbjct: 656  RAKKGVFVGYGDGVKGFRIWSPAEKRVIMSRNVVFDESPLLRTIVKPTTTSETGSLDKQV 715

Query: 433  EQQVTQDXXXXXXXXXXXXXXXXXXXXXXXVANQHNLALDRSRRANYGV-PPKRYGFEDM 257
            E QV Q+                       + +  + ++ + R    GV PP RYGFEDM
Sbjct: 716  EFQVIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDM 775

Query: 256  VAYALQVAEEVGPNSDEPSTYREAVTCTESTQWLAAMGDEMESLHKNQTWELVKRSRDRK 77
            V YALQVAEEV  ++ EPSTY+EA+  ++S +W AAMGDEMESLHKNQTW+LV +   RK
Sbjct: 776  VGYALQVAEEV--DTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRK 833

Query: 76   IVTCKWVYKKKEEETSVECIKYKAR 2
            I+TCKWV+KKKE  +  E +KYKAR
Sbjct: 834  IITCKWVFKKKEGISPAEGVKYKAR 858


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  139 bits (351), Expect = 3e-31
 Identities = 82/209 (39%), Positives = 119/209 (56%), Gaps = 5/209 (2%)
 Frame = -1

Query: 613  RAKKGVFVGYGDGIKGYRIWSPSENRVILSRNVVFDENSMFNPTVKSIIVSESGS-VEKQ 437
            RA K +F+GY  G+KGY++W P   +V++SRNVVF E+ M +    + +  ES      Q
Sbjct: 885  RAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASVQ 944

Query: 436  VEQQVTQDXXXXXXXXXXXXXXXXXXXXXXXVANQ---HNLALDRSRRANYGVPPKRYGF 266
            VE  ++                         +  Q    ++A DR +R     PP+RY  
Sbjct: 945  VEHLISSGHAPEKEDVAINQDEPVIEDSNSSIVQQSPKRSIAKDRPKRNIK--PPQRYIE 1002

Query: 265  E-DMVAYALQVAEEVGPNSDEPSTYREAVTCTESTQWLAAMGDEMESLHKNQTWELVKRS 89
            E ++VAYAL VAEE+  N+ EPSTY EA+   +  +W+ AM DEMESL KN TWELVK  
Sbjct: 1003 EANIVAYALSVAEEIEGNA-EPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLP 1061

Query: 88   RDRKIVTCKWVYKKKEEETSVECIKYKAR 2
            +++K + CKW++K+KE  +S +  +YKAR
Sbjct: 1062 KEKKPIRCKWIFKRKEGISSSDEARYKAR 1090


>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
            gi|20087076|gb|AAM10749.1|AC112514_2 Putative
            retroelement [Oryza sativa Japonica Group]
          Length = 1225

 Score =  136 bits (342), Expect = 3e-30
 Identities = 79/208 (37%), Positives = 117/208 (56%), Gaps = 5/208 (2%)
 Frame = -1

Query: 613  RAKKGVFVGYGDGIKGYRIWSPSENRVILSRNVVFDENSMFNPTVKSIIVSESGS-VEKQ 437
            RA K +F+GY  G+KGY++W P   +V++SRNVVF E+ M +    + +  ES      Q
Sbjct: 639  RAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASVQ 698

Query: 436  VEQQVTQDXXXXXXXXXXXXXXXXXXXXXXXVANQ---HNLALDRSRRANYGVPPKRYGF 266
            VE  ++                         +  Q   H++A D+ +R     PP+RY  
Sbjct: 699  VEHLISSGHAPEKENVAINLDAPVIEDSDSSIVQQSPKHSIAKDKPKRNIK--PPRRYIE 756

Query: 265  E-DMVAYALQVAEEVGPNSDEPSTYREAVTCTESTQWLAAMGDEMESLHKNQTWELVKRS 89
            E ++VAYAL VAEE+  N  EPSTY +A+   +  +W+ AM DEMESL KN TWELVK  
Sbjct: 757  EANIVAYALSVAEEIEGNV-EPSTYSDAIVSDDCNRWITAMHDEMESLEKNHTWELVKLP 815

Query: 88   RDRKIVTCKWVYKKKEEETSVECIKYKA 5
            +++K + CKW++K+KE  +  +  +YKA
Sbjct: 816  KEKKPIRCKWIFKRKEGMSPSDEARYKA 843


>gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1262

 Score =  136 bits (342), Expect = 3e-30
 Identities = 79/208 (37%), Positives = 117/208 (56%), Gaps = 5/208 (2%)
 Frame = -1

Query: 613  RAKKGVFVGYGDGIKGYRIWSPSENRVILSRNVVFDENSMFNPTVKSIIVSESGS-VEKQ 437
            RA K +F+GY  G+KGY++W P   +V++SRNVVF E+ M +    + +  ES      Q
Sbjct: 676  RAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASVQ 735

Query: 436  VEQQVTQDXXXXXXXXXXXXXXXXXXXXXXXVANQ---HNLALDRSRRANYGVPPKRYGF 266
            VE  ++                         +  Q   H++A D+ +R     PP+RY  
Sbjct: 736  VEHLISSGHAPEKENVAINLDAPVIEDSDSSIVQQSPKHSIAKDKPKRNIK--PPRRYIE 793

Query: 265  E-DMVAYALQVAEEVGPNSDEPSTYREAVTCTESTQWLAAMGDEMESLHKNQTWELVKRS 89
            E ++VAYAL VAEE+  N  EPSTY +A+   +  +W+ AM DEMESL KN TWELVK  
Sbjct: 794  EANIVAYALSVAEEIEGNV-EPSTYSDAIVSDDCNRWITAMHDEMESLEKNHTWELVKLP 852

Query: 88   RDRKIVTCKWVYKKKEEETSVECIKYKA 5
            +++K + CKW++K+KE  +  +  +YKA
Sbjct: 853  KEKKPIRCKWIFKRKEGMSPSDEARYKA 880


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score =  134 bits (338), Expect = 1e-29
 Identities = 78/209 (37%), Positives = 118/209 (56%), Gaps = 5/209 (2%)
 Frame = -1

Query: 613  RAKKGVFVGYGDGIKGYRIWSPSENRVILSRNVVFDENSMFNPTVKSIIVSESGS-VEKQ 437
            RA K +F+GY  G+KGY++W P   +V++SRNVVF E+ + +    + +  ES      Q
Sbjct: 650  RAIKCIFLGYASGVKGYKLWCPETKKVVISRNVVFHESVILHDKPSTNVPVESQEKASVQ 709

Query: 436  VEQQVTQDXXXXXXXXXXXXXXXXXXXXXXXVANQ---HNLALDRSRRANYGVPPKRYGF 266
            VE  ++                         + +Q    ++A D+ +R     PP+RY  
Sbjct: 710  VEHLISSGHAPEKEDVAINQDAPVIEDSDSSIVHQSPKRSIAKDKPKRNIK--PPRRYIE 767

Query: 265  E-DMVAYALQVAEEVGPNSDEPSTYREAVTCTESTQWLAAMGDEMESLHKNQTWELVKRS 89
            E  +VAYAL VAE++  N+ EPSTY EA+   +  +W+ AM DEMESL KN TWELVK  
Sbjct: 768  EAKIVAYALSVAEKIEGNA-EPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLP 826

Query: 88   RDRKIVTCKWVYKKKEEETSVECIKYKAR 2
            +++K + CKW++K+KE  +  +  +YKAR
Sbjct: 827  KEKKPIRCKWIFKRKEGMSPSDEARYKAR 855