BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00034458
         (612 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycope...   243   3e-62
ref|XP_003538711.1| PREDICTED: DNA-directed RNA polymerase D sub...   228   5e-58
ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   224   1e-56
emb|CBI34757.3| unnamed protein product [Vitis vinifera]              224   1e-56
emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]   224   1e-56

>gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
          Length = 1138

 Score =  243 bits (619), Expect = 3e-62
 Identities = 125/203 (61%), Positives = 154/203 (75%)
 Frame = +2

Query: 2   SLADMFLSSDLHSRKNMIDEVSCALREAEHISFVKLLMVDSNLDFLVGSLKESKTARDFE 181
           SL+D+++S+D +SR+NMIDEV   L+EAE +S+++LLM+  N DFL G+L+ESK +  F+
Sbjct: 301 SLSDLYISADSYSRENMIDEVCSGLQEAERLSYIQLLMIKYNKDFLSGNLEESKNSMGFD 360

Query: 182 VEPMSCDRQKSAALIQVSVSAFKQVFRDIQNLFYQYASEDNSFLAMFKAGSKKSNLTRAV 361
            E MS  +QKSA+L Q S SAFK+VFRDIQNL Y YAS DNS LAM KAGS K NL + V
Sbjct: 361 FEFMSIMQQKSASLSQASASAFKKVFRDIQNLVYNYASNDNSLLAMLKAGS-KGNLLKLV 419

Query: 362 QHAMCLGLQHSLVPLSFKLPRHLSCDAWNSQKEMESLDLTDDHSNISKSYIPYAVVQSSF 541
           QH MCLGLQ SLVP+SF++PR LSCDAWN+ K    ++          SYIP AVV+SSF
Sbjct: 420 QHNMCLGLQQSLVPVSFRMPRQLSCDAWNNHKSHLVIEKPHKVPECPGSYIPSAVVKSSF 479

Query: 542 LSGLNPLECFVHSLTTRDGSFGG 610
           L+GLNPLECFVHSLTTRD SF G
Sbjct: 480 LAGLNPLECFVHSLTTRDSSFSG 502


>ref|XP_003538711.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Glycine max]
          Length = 1461

 Score =  228 bits (582), Expect = 5e-58
 Identities = 116/201 (57%), Positives = 156/201 (77%)
 Frame = +2

Query: 2    SLADMFLSSDLHSRKNMIDEVSCALREAEHISFVKLLMVDSNLDFLVGSLKESKTARDFE 181
            SL+D++LSSD ++RKNMI+E+   L++AE     K L++D   DFL GS++ES+ A   +
Sbjct: 628  SLSDLYLSSDSYARKNMIEEIFYGLQDAEQACNFKQLLLDCYCDFLSGSIQESENAITVD 687

Query: 182  VEPMSCDRQKSAALIQVSVSAFKQVFRDIQNLFYQYASEDNSFLAMFKAGSKKSNLTRAV 361
             + ++ +RQ SAAL Q SV AF+QVFR+IQ+L  +YA +DN+FLAMFKAGSK  NL + V
Sbjct: 688  ADRLNYERQISAALSQASVDAFRQVFRNIQSLADKYACKDNAFLAMFKAGSK-GNLLKLV 746

Query: 362  QHAMCLGLQHSLVPLSFKLPRHLSCDAWNSQKEMESLDLTDDHSNISKSYIPYAVVQSSF 541
            QH+MCLG+Q+SLV LS++LPRHLSC AWNSQK ++S+ ++       +SYIPYAVV+SSF
Sbjct: 747  QHSMCLGMQNSLVRLSYRLPRHLSCAAWNSQKWLDSIQMSSGTLESVQSYIPYAVVESSF 806

Query: 542  LSGLNPLECFVHSLTTRDGSF 604
            L+GLNPLECFVHS+T RD SF
Sbjct: 807  LTGLNPLECFVHSVTNRDSSF 827


>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Vitis vinifera]
          Length = 1560

 Score =  224 bits (570), Expect = 1e-56
 Identities = 122/201 (60%), Positives = 150/201 (74%)
 Frame = +2

Query: 2    SLADMFLSSDLHSRKNMIDEVSCALREAEHISFVKLLMVDSNLDFLVGSLKESKTARDFE 181
            SL+D++LSSD  SRKNMIDEV C L  AE     K L+VDS+ +FL+GS + ++     +
Sbjct: 656  SLSDIYLSSDSISRKNMIDEVFCGLLVAEQTCHFKQLLVDSSQNFLIGSGENNQNGVVPD 715

Query: 182  VEPMSCDRQKSAALIQVSVSAFKQVFRDIQNLFYQYASEDNSFLAMFKAGSKKSNLTRAV 361
            V+ +  +RQ SAAL Q SV AFKQ FRDIQNL YQYA++DNS LAM KAGS K NL + V
Sbjct: 716  VQSLWYERQGSAALCQSSVCAFKQKFRDIQNLVYQYANKDNSLLAMLKAGS-KGNLLKLV 774

Query: 362  QHAMCLGLQHSLVPLSFKLPRHLSCDAWNSQKEMESLDLTDDHSNISKSYIPYAVVQSSF 541
            Q  +CLGLQHSLVPLSFK+P  LSC AWN QK +  L + +D S  ++SYIPYAVV++SF
Sbjct: 775  QQGLCLGLQHSLVPLSFKIPHQLSCAAWNKQK-VPGL-IQNDTSEYAESYIPYAVVENSF 832

Query: 542  LSGLNPLECFVHSLTTRDGSF 604
            L GLNPLECFVHS+T+RD SF
Sbjct: 833  LMGLNPLECFVHSVTSRDSSF 853


>emb|CBI34757.3| unnamed protein product [Vitis vinifera]
          Length = 1359

 Score =  224 bits (570), Expect = 1e-56
 Identities = 122/201 (60%), Positives = 150/201 (74%)
 Frame = +2

Query: 2    SLADMFLSSDLHSRKNMIDEVSCALREAEHISFVKLLMVDSNLDFLVGSLKESKTARDFE 181
            SL+D++LSSD  SRKNMIDEV C L  AE     K L+VDS+ +FL+GS + ++     +
Sbjct: 525  SLSDIYLSSDSISRKNMIDEVFCGLLVAEQTCHFKQLLVDSSQNFLIGSGENNQNGVVPD 584

Query: 182  VEPMSCDRQKSAALIQVSVSAFKQVFRDIQNLFYQYASEDNSFLAMFKAGSKKSNLTRAV 361
            V+ +  +RQ SAAL Q SV AFKQ FRDIQNL YQYA++DNS LAM KAGS K NL + V
Sbjct: 585  VQSLWYERQGSAALCQSSVCAFKQKFRDIQNLVYQYANKDNSLLAMLKAGS-KGNLLKLV 643

Query: 362  QHAMCLGLQHSLVPLSFKLPRHLSCDAWNSQKEMESLDLTDDHSNISKSYIPYAVVQSSF 541
            Q  +CLGLQHSLVPLSFK+P  LSC AWN QK +  L + +D S  ++SYIPYAVV++SF
Sbjct: 644  QQGLCLGLQHSLVPLSFKIPHQLSCAAWNKQK-VPGL-IQNDTSEYAESYIPYAVVENSF 701

Query: 542  LSGLNPLECFVHSLTTRDGSF 604
            L GLNPLECFVHS+T+RD SF
Sbjct: 702  LMGLNPLECFVHSVTSRDSSF 722


>emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]
          Length = 1393

 Score =  224 bits (570), Expect = 1e-56
 Identities = 122/201 (60%), Positives = 150/201 (74%)
 Frame = +2

Query: 2    SLADMFLSSDLHSRKNMIDEVSCALREAEHISFVKLLMVDSNLDFLVGSLKESKTARDFE 181
            SL+D++LSSD  SRKNMIDEV C L  AE     K L+VDS+ +FL+GS + ++     +
Sbjct: 626  SLSDIYLSSDSISRKNMIDEVFCGLLVAEQTCHFKQLLVDSSQNFLIGSGENNQNGVVPD 685

Query: 182  VEPMSCDRQKSAALIQVSVSAFKQVFRDIQNLFYQYASEDNSFLAMFKAGSKKSNLTRAV 361
            V+ +  +RQ SAAL Q SV AFKQ FRDIQNL YQYA++DNS LAM KAGS K NL + V
Sbjct: 686  VQSLWYERQGSAALCQSSVCAFKQKFRDIQNLVYQYANKDNSLLAMLKAGS-KGNLLKLV 744

Query: 362  QHAMCLGLQHSLVPLSFKLPRHLSCDAWNSQKEMESLDLTDDHSNISKSYIPYAVVQSSF 541
            Q  +CLGLQHSLVPLSFK+P  LSC AWN QK +  L + +D S  ++SYIPYAVV++SF
Sbjct: 745  QQGLCLGLQHSLVPLSFKIPHQLSCAAWNKQK-VPGL-IQNDTSEYAESYIPYAVVENSF 802

Query: 542  LSGLNPLECFVHSLTTRDGSF 604
            L GLNPLECFVHS+T+RD SF
Sbjct: 803  LMGLNPLECFVHSVTSRDSSF 823