BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00034457
         (701 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycope...   282   5e-74
ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub...   267   2e-69
ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   267   2e-69
emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]   267   2e-69
ref|XP_003538711.1| PREDICTED: DNA-directed RNA polymerase D sub...   264   1e-68

>gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
          Length = 1138

 Score =  282 bits (721), Expect = 5e-74
 Identities = 144/233 (61%), Positives = 180/233 (77%)
 Frame = -1

Query: 701 LSHCQGEFLDFLHAAQGVLSEWLSMRGLSVSLADMYLSSDSHSRKNLIDEVRCGLQDAEH 522
           + H  G+ LD L+AAQ VL EWLSMRGLSVSL+D+Y+S+DS+SR+N+IDEV  GLQ+AE 
Sbjct: 271 VKHNGGDTLDLLYAAQTVLCEWLSMRGLSVSLSDLYISADSYSRENMIDEVCSGLQEAER 330

Query: 521 ISLVKLLMVDSNLDFLSGSLEESEFARDFGVDHLFYDRQKSAALSQVYVSAFKQVFKDIQ 342
           +S ++LLM+  N DFLSG+LEES+ +  F  + +   +QKSA+LSQ   SAFK+VF+DIQ
Sbjct: 331 LSYIQLLMIKYNKDFLSGNLEESKNSMGFDFEFMSIMQQKSASLSQASASAFKKVFRDIQ 390

Query: 341 NLFYQYASEDNSFLAMLKAGSKKSNLTRAVQHGLCLGLQHSSVTLSFRIPQQLSCGAWNS 162
           NL Y YAS DNS LAMLKAGS K NL + VQH +CLGLQ S V +SFR+P+QLSC AWN+
Sbjct: 391 NLVYNYASNDNSLLAMLKAGS-KGNLLKLVQHNMCLGLQQSLVPVSFRMPRQLSCDAWNN 449

Query: 161 QKELESLNSTDDLPEISGSYIPSAVIQSSFLSGLNPLECFVHSLTSRDGSFGG 3
            K    +     +PE  GSYIPSAV++SSFL+GLNPLECFVHSLT+RD SF G
Sbjct: 450 HKSHLVIEKPHKVPECPGSYIPSAVVKSSFLAGLNPLECFVHSLTTRDSSFSG 502


>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
            sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
            QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Cucumis sativus]
          Length = 1469

 Score =  267 bits (682), Expect = 2e-69
 Identities = 132/231 (57%), Positives = 174/231 (75%)
 Frame = -1

Query: 701  LSHCQGEFLDFLHAAQGVLSEWLSMRGLSVSLADMYLSSDSHSRKNLIDEVRCGLQDAEH 522
            + HC+G+ LD+L  AQGVL EWLS RGLSVSL+D+YLS DS+S +N++D++ CGLQ+AE 
Sbjct: 604  IEHCEGKTLDYLRDAQGVLCEWLSTRGLSVSLSDLYLSVDSYSHENMMDDIFCGLQEAEE 663

Query: 521  ISLVKLLMVDSNLDFLSGSLEESEFARDFGVDHLFYDRQKSAALSQVYVSAFKQVFKDIQ 342
               +K LMVDS+ + L G+ E+++      V+ L Y++QKSAAL+Q  V AFK+VF+DIQ
Sbjct: 664  TCNLKQLMVDSHKEILIGNDEDNQHLLSIAVERLIYEKQKSAALNQASVDAFKKVFRDIQ 723

Query: 341  NLFYQYASEDNSFLAMLKAGSKKSNLTRAVQHGLCLGLQHSSVTLSFRIPQQLSCGAWNS 162
            NL Y+Y+ +DNS L M KAGS K NL + VQH +CLGLQHS VTLSF +P +LSC AWNS
Sbjct: 724  NLVYKYSGKDNSLLTMFKAGS-KGNLMKLVQHSMCLGLQHSLVTLSFSLPHKLSCAAWNS 782

Query: 161  QKELESLNSTDDLPEISGSYIPSAVIQSSFLSGLNPLECFVHSLTSRDGSF 9
            QK +      D LP+ + S+IP AV+++SFLSGLNP ECF HS+T+RD SF
Sbjct: 783  QK-MPRYIQKDGLPDRTQSFIPYAVVENSFLSGLNPFECFAHSVTNRDSSF 832


>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Vitis vinifera]
          Length = 1560

 Score =  267 bits (682), Expect = 2e-69
 Identities = 147/228 (64%), Positives = 171/228 (75%)
 Frame = -1

Query: 692  CQGEFLDFLHAAQGVLSEWLSMRGLSVSLADMYLSSDSHSRKNLIDEVRCGLQDAEHISL 513
            CQG+ LDFL+AAQ VL EWLSMRGLSVSL+D+YLSSDS SRKN+IDEV CGL  AE    
Sbjct: 629  CQGKALDFLYAAQEVLCEWLSMRGLSVSLSDIYLSSDSISRKNMIDEVFCGLLVAEQTCH 688

Query: 512  VKLLMVDSNLDFLSGSLEESEFARDFGVDHLFYDRQKSAALSQVYVSAFKQVFKDIQNLF 333
             K L+VDS+ +FL GS E ++      V  L+Y+RQ SAAL Q  V AFKQ F+DIQNL 
Sbjct: 689  FKQLLVDSSQNFLIGSGENNQNGVVPDVQSLWYERQGSAALCQSSVCAFKQKFRDIQNLV 748

Query: 332  YQYASEDNSFLAMLKAGSKKSNLTRAVQHGLCLGLQHSSVTLSFRIPQQLSCGAWNSQKE 153
            YQYA++DNS LAMLKAGS K NL + VQ GLCLGLQHS V LSF+IP QLSC AWN QK 
Sbjct: 749  YQYANKDNSLLAMLKAGS-KGNLLKLVQQGLCLGLQHSLVPLSFKIPHQLSCAAWNKQKV 807

Query: 152  LESLNSTDDLPEISGSYIPSAVIQSSFLSGLNPLECFVHSLTSRDGSF 9
               +   +D  E + SYIP AV+++SFL GLNPLECFVHS+TSRD SF
Sbjct: 808  PGLIQ--NDTSEYAESYIPYAVVENSFLMGLNPLECFVHSVTSRDSSF 853


>emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]
          Length = 1393

 Score =  267 bits (682), Expect = 2e-69
 Identities = 147/228 (64%), Positives = 171/228 (75%)
 Frame = -1

Query: 692  CQGEFLDFLHAAQGVLSEWLSMRGLSVSLADMYLSSDSHSRKNLIDEVRCGLQDAEHISL 513
            CQG+ LDFL+AAQ VL EWLSMRGLSVSL+D+YLSSDS SRKN+IDEV CGL  AE    
Sbjct: 599  CQGKALDFLYAAQEVLCEWLSMRGLSVSLSDIYLSSDSISRKNMIDEVFCGLLVAEQTCH 658

Query: 512  VKLLMVDSNLDFLSGSLEESEFARDFGVDHLFYDRQKSAALSQVYVSAFKQVFKDIQNLF 333
             K L+VDS+ +FL GS E ++      V  L+Y+RQ SAAL Q  V AFKQ F+DIQNL 
Sbjct: 659  FKQLLVDSSQNFLIGSGENNQNGVVPDVQSLWYERQGSAALCQSSVCAFKQKFRDIQNLV 718

Query: 332  YQYASEDNSFLAMLKAGSKKSNLTRAVQHGLCLGLQHSSVTLSFRIPQQLSCGAWNSQKE 153
            YQYA++DNS LAMLKAGS K NL + VQ GLCLGLQHS V LSF+IP QLSC AWN QK 
Sbjct: 719  YQYANKDNSLLAMLKAGS-KGNLLKLVQQGLCLGLQHSLVPLSFKIPHQLSCAAWNKQKV 777

Query: 152  LESLNSTDDLPEISGSYIPSAVIQSSFLSGLNPLECFVHSLTSRDGSF 9
               +   +D  E + SYIP AV+++SFL GLNPLECFVHS+TSRD SF
Sbjct: 778  PGLIQ--NDTSEYAESYIPYAVVENSFLMGLNPLECFVHSVTSRDSSF 823


>ref|XP_003538711.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Glycine max]
          Length = 1461

 Score =  264 bits (675), Expect = 1e-68
 Identities = 137/231 (59%), Positives = 175/231 (75%)
 Frame = -1

Query: 701  LSHCQGEFLDFLHAAQGVLSEWLSMRGLSVSLADMYLSSDSHSRKNLIDEVRCGLQDAEH 522
            + H QG+ L+FL+ AQ VL EWLSM G SVSL+D+YLSSDS++RKN+I+E+  GLQDAE 
Sbjct: 598  VEHYQGKTLNFLYTAQKVLCEWLSMTGFSVSLSDLYLSSDSYARKNMIEEIFYGLQDAEQ 657

Query: 521  ISLVKLLMVDSNLDFLSGSLEESEFARDFGVDHLFYDRQKSAALSQVYVSAFKQVFKDIQ 342
                K L++D   DFLSGS++ESE A     D L Y+RQ SAALSQ  V AF+QVF++IQ
Sbjct: 658  ACNFKQLLLDCYCDFLSGSIQESENAITVDADRLNYERQISAALSQASVDAFRQVFRNIQ 717

Query: 341  NLFYQYASEDNSFLAMLKAGSKKSNLTRAVQHGLCLGLQHSSVTLSFRIPQQLSCGAWNS 162
            +L  +YA +DN+FLAM KAGS K NL + VQH +CLG+Q+S V LS+R+P+ LSC AWNS
Sbjct: 718  SLADKYACKDNAFLAMFKAGS-KGNLLKLVQHSMCLGMQNSLVRLSYRLPRHLSCAAWNS 776

Query: 161  QKELESLNSTDDLPEISGSYIPSAVIQSSFLSGLNPLECFVHSLTSRDGSF 9
            QK L+S+  +    E   SYIP AV++SSFL+GLNPLECFVHS+T+RD SF
Sbjct: 777  QKWLDSIQMSSGTLESVQSYIPYAVVESSFLTGLNPLECFVHSVTNRDSSF 827