BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00034367
         (843 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containi...   355   7e-96
emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]   353   3e-95
ref|XP_002523895.1| pentatricopeptide repeat-containing protein,...   339   5e-91
ref|XP_002533225.1| pentatricopeptide repeat-containing protein,...   321   1e-85
ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containi...   316   4e-84

>ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like
            [Vitis vinifera]
          Length = 778

 Score =  355 bits (911), Expect = 7e-96
 Identities = 170/258 (65%), Positives = 213/258 (82%), Gaps = 1/258 (0%)
 Frame = +3

Query: 12   WDEMKSKDIRPSLITYNSIIGGLCKSGKTEQAINKLNELFEDGLFPDETTYNTIINGYCG 191
            WDEMK K+I PS +TYN IIGGLC+ GKTEQAI+KLNEL E GL PDETTYNTI++GYC 
Sbjct: 511  WDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCR 570

Query: 192  EGNVEKAFRFHNRMIENCFKPDMYTSNILLQGLCREGMLEKALKLFNTWISKEKQLDAVT 371
            EG+VEKAF+FHN+M+EN FKPD++T NILL+GLC EG+LEKALKLFNTW+SK K +D VT
Sbjct: 571  EGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVT 630

Query: 372  YNTLITALCKAGRIDDALVLITEMGEKKLGPDKYTYNAILSALTDAGRMEEAQDLVSKMI 551
            YNTLIT+LCK GR+DDA  L++EM EK+LGPD YTYNAI++ALTD+GR+ EA++ +SKM+
Sbjct: 631  YNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKML 690

Query: 552  AMDKLSEGSPSLDKEED-VTCKPQQELDSSSVSYSKHINELCCKGKYKDAIQTFGELSQR 728
                L +    LDK E  VT +  +E DSSSV+YS+ I ELC +GKYKDA++ FGE  Q+
Sbjct: 691  EKGNLPDQVLQLDKNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFGESKQK 750

Query: 729  GITLEKSTYISLISGLLK 782
            GIT++KSTYI+L+ GL+K
Sbjct: 751  GITVDKSTYINLMDGLIK 768



 Score =  144 bits (362), Expect = 3e-32
 Identities = 88/269 (32%), Positives = 137/269 (50%), Gaps = 13/269 (4%)
 Frame = +3

Query: 15   DEMKSKDIRPSLITYNSIIGGLCKSGKTEQAINKLNELFEDGLFPDETTYNTIINGYCGE 194
            +EM  K ++P+ +T+N ++   CK GK + A N + ++ E G  PD  TYNT+INGYC  
Sbjct: 372  EEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKA 431

Query: 195  GNVEKAFRFHNRMIENCFKPDMYTSNILLQGLCREGMLEKALKLFNTWISKEKQLDAVTY 374
            GN+ +AFR  + M     K D  T N +L+ LCRE  LE+A KL ++   +   +D V+Y
Sbjct: 432  GNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSY 491

Query: 375  NTLITALCKAGRIDDALVLITEMGEKKLGPDKYTYNAILSALTDAGRMEEAQDLVSKMIA 554
             TLI    K G +D AL L  EM EK++ P   TYN I+  L   G+ E+A   +++++ 
Sbjct: 492  GTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLE 551

Query: 555  MDKLSEGSP------SLDKEEDVTCKPQQELDSSSVSYSKHI-------NELCCKGKYKD 695
               L + +          +E DV    Q        S+   +         LC +G  + 
Sbjct: 552  SGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEK 611

Query: 696  AIQTFGELSQRGITLEKSTYISLISGLLK 782
            A++ F     +G  ++  TY +LI+ L K
Sbjct: 612  ALKLFNTWVSKGKAIDTVTYNTLITSLCK 640



 Score =  136 bits (342), Expect = 7e-30
 Identities = 91/300 (30%), Positives = 144/300 (48%), Gaps = 48/300 (16%)
 Frame = +3

Query: 18   EMKSKDIRPSLITYNSIIGGLCKSGKTEQAINKLNELFEDGLFPDETTYNTIINGYCGEG 197
            +MKS+ + P+  TYN ++ G CK G  ++A N +  + ++ L PD  TYN +ING C EG
Sbjct: 268  DMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEG 327

Query: 198  NVEKAFRF---------------HNRMIENCF--------------------KPDMYTSN 272
             +E+AF+                +N +I  C                     KP+  T N
Sbjct: 328  RIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHN 387

Query: 273  ILLQGLCREGMLEKALKLFNTWISKEKQLDAVTYNTLITALCKAGRIDDALVLITEMGEK 452
            I+++  C+EG ++ A              D VTYNTLI   CKAG + +A   + EMG K
Sbjct: 388  IMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRK 447

Query: 453  KLGPDKYTYNAILSALTDAGRMEEAQDLVS----KMIAMDKLSEGSPSL----DKEEDVT 608
             +  D  T N IL  L    ++EEA  L+S    +   +D++S G+  +    D   D  
Sbjct: 448  NMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRA 507

Query: 609  CK-----PQQELDSSSVSYSKHINELCCKGKYKDAIQTFGELSQRGITLEKSTYISLISG 773
             K      ++E+  S+V+Y+  I  LC  GK + AI    EL + G+  +++TY +++ G
Sbjct: 508  LKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHG 567



 Score =  127 bits (320), Expect = 2e-27
 Identities = 73/258 (28%), Positives = 129/258 (50%)
 Frame = +3

Query: 9   FWDEMKSKDIRPSLITYNSIIGGLCKSGKTEQAINKLNELFEDGLFPDETTYNTIINGYC 188
           F + M   +  P  +TYN+I+  LCK G+   A + L ++   GL P+  TYN ++ GYC
Sbjct: 230 FLNVMGKYNCSPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYC 289

Query: 189 GEGNVEKAFRFHNRMIENCFKPDMYTSNILLQGLCREGMLEKALKLFNTWISKEKQLDAV 368
             G +++A      M +N   PD++T N+L+ GLC EG +E+A KL +   + +   D V
Sbjct: 290 KMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVV 349

Query: 369 TYNTLITALCKAGRIDDALVLITEMGEKKLGPDKYTYNAILSALTDAGRMEEAQDLVSKM 548
           +YNTLI    +  +I +A  L+ EM EK + P+  T+N ++      G+M++A + ++KM
Sbjct: 350 SYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKM 409

Query: 549 IAMDKLSEGSPSLDKEEDVTCKPQQELDSSSVSYSKHINELCCKGKYKDAIQTFGELSQR 728
                                  +       V+Y+  IN  C  G   +A +T  E+ ++
Sbjct: 410 ----------------------EESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRK 447

Query: 729 GITLEKSTYISLISGLLK 782
            + ++  T  +++  L +
Sbjct: 448 NMKMDSVTLNTILRTLCR 465



 Score =  113 bits (282), Expect = 6e-23
 Identities = 79/278 (28%), Positives = 134/278 (48%), Gaps = 23/278 (8%)
 Frame = +3

Query: 18  EMKSKDIRPSLITYNSIIGGLCKSGKTEQAINKLNELFED----GLFPDETTYNTIINGY 185
           +MK   +RP+L+T N+++  L +   +  +++   E F D    G+ P+  T+N +I GY
Sbjct: 160 KMKRLRLRPNLLTCNTLLNSLVRY-PSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGY 218

Query: 186 CGEGNVEKAFRFHNRMIENCFKPDMYTSNILLQGLCREGMLEKALKLFNTWISKEKQLDA 365
           C E   + A  F N M +    PD  T N +L  LC++G L  A  L     S+    + 
Sbjct: 219 CLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNR 278

Query: 366 VTYNTLITALCKAGRIDDALVLITEMGEKKLGPDKYTYNAILSALTDAGRMEEA------ 527
            TYN L+   CK G + +A  +I  M +  L PD +TYN +++ L + GR+EEA      
Sbjct: 279 NTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDE 338

Query: 528 -------------QDLVSKMIAMDKLSEGSPSLDKEEDVTCKPQQELDSSSVSYSKHINE 668
                          L++  +   K+SE    L++  +   KP      ++V+++  +  
Sbjct: 339 MENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKP------NAVTHNIMVKW 392

Query: 669 LCCKGKYKDAIQTFGELSQRGITLEKSTYISLISGLLK 782
            C +GK  DA  T  ++ + G + +  TY +LI+G  K
Sbjct: 393 YCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCK 430



 Score = 82.8 bits (203), Expect = 9e-14
 Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 23/187 (12%)
 Frame = +3

Query: 9    FWDEMKSKDIRPSLITYNSIIGGLCKSGKTEQAINKLNELFEDGLFPDETTYNTIINGYC 188
            F ++M     +P + T N ++ GLC  G  E+A+   N     G   D  TYNT+I   C
Sbjct: 580  FHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLC 639

Query: 189  GEGNVEKAFRFHNRMIENCFKPDMYTSNILLQGLCREGMLEKALKLFNTWI--------- 341
             EG ++ AF   + M E    PD YT N ++  L   G + +A +  +  +         
Sbjct: 640  KEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGNLPDQV 699

Query: 342  --------------SKEKQLDAVTYNTLITALCKAGRIDDALVLITEMGEKKLGPDKYTY 479
                          S+E    +V Y+  I  LC  G+  DA+ +  E  +K +  DK TY
Sbjct: 700  LQLDKNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFGESKQKGITVDKSTY 759

Query: 480  NAILSAL 500
              ++  L
Sbjct: 760  INLMDGL 766


>emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score =  353 bits (905), Expect = 3e-95
 Identities = 170/258 (65%), Positives = 211/258 (81%), Gaps = 1/258 (0%)
 Frame = +3

Query: 12   WDEMKSKDIRPSLITYNSIIGGLCKSGKTEQAINKLNELFEDGLFPDETTYNTIINGYCG 191
            WDEMK K+I PS +TYN IIGGLC+ GKTEQAI+KLNEL E GL PDETTYNTI++GYC 
Sbjct: 511  WDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCR 570

Query: 192  EGNVEKAFRFHNRMIENCFKPDMYTSNILLQGLCREGMLEKALKLFNTWISKEKQLDAVT 371
            EG+VEKAF+FHN+M+EN FKPD++T NILL+GLC EGMLEKALKLFNTW+SK K +D VT
Sbjct: 571  EGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVT 630

Query: 372  YNTLITALCKAGRIDDALVLITEMGEKKLGPDKYTYNAILSALTDAGRMEEAQDLVSKMI 551
            YNTLIT+LCK GR+DDA  L++EM EK+LGPD YTYNAI++ALTD+GR+ EA++ +SKM+
Sbjct: 631  YNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKML 690

Query: 552  AMDKLSEGSPSLDKEED-VTCKPQQELDSSSVSYSKHINELCCKGKYKDAIQTFGELSQR 728
                L      LD  E  VT +  +E DSSSV+YS+ I ELC +GKYKDA++ FGE  Q+
Sbjct: 691  EKGXLPXQVLQLDXNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFGESKQK 750

Query: 729  GITLEKSTYISLISGLLK 782
            GIT++KSTYI+L+ GL+K
Sbjct: 751  GITVDKSTYINLMDGLIK 768



 Score =  144 bits (363), Expect = 2e-32
 Identities = 88/269 (32%), Positives = 137/269 (50%), Gaps = 13/269 (4%)
 Frame = +3

Query: 15   DEMKSKDIRPSLITYNSIIGGLCKSGKTEQAINKLNELFEDGLFPDETTYNTIINGYCGE 194
            +EM  K ++P+ +T+N ++   CK GK + A N + ++ E G  PD  TYNT+INGYC  
Sbjct: 372  EEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKA 431

Query: 195  GNVEKAFRFHNRMIENCFKPDMYTSNILLQGLCREGMLEKALKLFNTWISKEKQLDAVTY 374
            GN+ +AFR  + M     K D  T N +L+ LCRE  LE+A KL ++   +   +D V+Y
Sbjct: 432  GNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSY 491

Query: 375  NTLITALCKAGRIDDALVLITEMGEKKLGPDKYTYNAILSALTDAGRMEEAQDLVSKMIA 554
             TLI    K G +D AL L  EM EK++ P   TYN I+  L   G+ E+A   +++++ 
Sbjct: 492  GTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLE 551

Query: 555  MDKLSEGSP------SLDKEEDVTCKPQQELDSSSVSYSKHI-------NELCCKGKYKD 695
               L + +          +E DV    Q        S+   +         LC +G  + 
Sbjct: 552  SGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEK 611

Query: 696  AIQTFGELSQRGITLEKSTYISLISGLLK 782
            A++ F     +G  ++  TY +LI+ L K
Sbjct: 612  ALKLFNTWVSKGKAIDTVTYNTLITSLCK 640



 Score =  136 bits (342), Expect = 7e-30
 Identities = 91/300 (30%), Positives = 144/300 (48%), Gaps = 48/300 (16%)
 Frame = +3

Query: 18   EMKSKDIRPSLITYNSIIGGLCKSGKTEQAINKLNELFEDGLFPDETTYNTIINGYCGEG 197
            +MKS+ + P+  TYN ++ G CK G  ++A N +  + ++ L PD  TYN +ING C EG
Sbjct: 268  DMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEG 327

Query: 198  NVEKAFRF---------------HNRMIENCF--------------------KPDMYTSN 272
             +E+AF+                +N +I  C                     KP+  T N
Sbjct: 328  RIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHN 387

Query: 273  ILLQGLCREGMLEKALKLFNTWISKEKQLDAVTYNTLITALCKAGRIDDALVLITEMGEK 452
            I+++  C+EG ++ A              D VTYNTLI   CKAG + +A   + EMG K
Sbjct: 388  IMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRK 447

Query: 453  KLGPDKYTYNAILSALTDAGRMEEAQDLVS----KMIAMDKLSEGSPSL----DKEEDVT 608
             +  D  T N IL  L    ++EEA  L+S    +   +D++S G+  +    D   D  
Sbjct: 448  NMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRA 507

Query: 609  CK-----PQQELDSSSVSYSKHINELCCKGKYKDAIQTFGELSQRGITLEKSTYISLISG 773
             K      ++E+  S+V+Y+  I  LC  GK + AI    EL + G+  +++TY +++ G
Sbjct: 508  LKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHG 567



 Score =  128 bits (322), Expect = 1e-27
 Identities = 73/258 (28%), Positives = 129/258 (50%)
 Frame = +3

Query: 9   FWDEMKSKDIRPSLITYNSIIGGLCKSGKTEQAINKLNELFEDGLFPDETTYNTIINGYC 188
           F + M   +  P  +TYN+I+  LCK G+   A + L ++   GL P+  TYN ++ GYC
Sbjct: 230 FLNVMGKYNCSPDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYC 289

Query: 189 GEGNVEKAFRFHNRMIENCFKPDMYTSNILLQGLCREGMLEKALKLFNTWISKEKQLDAV 368
             G +++A      M +N   PD++T N+L+ GLC EG +E+A KL +   + +   D V
Sbjct: 290 KMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVV 349

Query: 369 TYNTLITALCKAGRIDDALVLITEMGEKKLGPDKYTYNAILSALTDAGRMEEAQDLVSKM 548
           +YNTLI    +  +I +A  L+ EM EK + P+  T+N ++      G+M++A + ++KM
Sbjct: 350 SYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKM 409

Query: 549 IAMDKLSEGSPSLDKEEDVTCKPQQELDSSSVSYSKHINELCCKGKYKDAIQTFGELSQR 728
                                  +       V+Y+  IN  C  G   +A +T  E+ ++
Sbjct: 410 ----------------------EESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRK 447

Query: 729 GITLEKSTYISLISGLLK 782
            + ++  T  +++  L +
Sbjct: 448 NMKMDSVTLNTILRTLCR 465



 Score =  114 bits (284), Expect = 4e-23
 Identities = 79/278 (28%), Positives = 134/278 (48%), Gaps = 23/278 (8%)
 Frame = +3

Query: 18  EMKSKDIRPSLITYNSIIGGLCKSGKTEQAINKLNELFED----GLFPDETTYNTIINGY 185
           +MK   +RP+L+T N+++  L +   +  +++   E F D    G+ P+  T+N +I GY
Sbjct: 160 KMKRLRLRPNLLTCNTLLNSLVRY-PSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGY 218

Query: 186 CGEGNVEKAFRFHNRMIENCFKPDMYTSNILLQGLCREGMLEKALKLFNTWISKEKQLDA 365
           C E   + A  F N M +    PD  T N +L  LC++G L  A  L     S+    + 
Sbjct: 219 CLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNR 278

Query: 366 VTYNTLITALCKAGRIDDALVLITEMGEKKLGPDKYTYNAILSALTDAGRMEEA------ 527
            TYN L+   CK G + +A  +I  M +  L PD +TYN +++ L + GR+EEA      
Sbjct: 279 NTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDE 338

Query: 528 -------------QDLVSKMIAMDKLSEGSPSLDKEEDVTCKPQQELDSSSVSYSKHINE 668
                          L++  +   K+SE    L++  +   KP      ++V+++  +  
Sbjct: 339 MENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKP------NAVTHNIMVKW 392

Query: 669 LCCKGKYKDAIQTFGELSQRGITLEKSTYISLISGLLK 782
            C +GK  DA  T  ++ + G + +  TY +LI+G  K
Sbjct: 393 YCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCK 430



 Score = 83.2 bits (204), Expect = 7e-14
 Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 23/187 (12%)
 Frame = +3

Query: 9    FWDEMKSKDIRPSLITYNSIIGGLCKSGKTEQAINKLNELFEDGLFPDETTYNTIINGYC 188
            F ++M     +P + T N ++ GLC  G  E+A+   N     G   D  TYNT+I   C
Sbjct: 580  FHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLC 639

Query: 189  GEGNVEKAFRFHNRMIENCFKPDMYTSNILLQGLCREGMLEKALKLFNTWI--------- 341
             EG ++ AF   + M E    PD YT N ++  L   G + +A +  +  +         
Sbjct: 640  KEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGXLPXQV 699

Query: 342  --------------SKEKQLDAVTYNTLITALCKAGRIDDALVLITEMGEKKLGPDKYTY 479
                          S+E    +V Y+  I  LC  G+  DA+ +  E  +K +  DK TY
Sbjct: 700  LQLDXNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFGESKQKGITVDKSTY 759

Query: 480  NAILSAL 500
              ++  L
Sbjct: 760  INLMDGL 766


>ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223536825|gb|EEF38464.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 784

 Score =  339 bits (869), Expect = 5e-91
 Identities = 164/258 (63%), Positives = 209/258 (81%), Gaps = 1/258 (0%)
 Frame = +3

Query: 12   WDEMKSKDIRPSLITYNSIIGGLCKSGKTEQAINKLNELFEDGLFPDETTYNTIINGYCG 191
            WDEMK K+I PS+ITYN++IGGLC SGKT+Q+I+KLNEL E GL PDETTYNTII GYC 
Sbjct: 515  WDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCR 574

Query: 192  EGNVEKAFRFHNRMIENCFKPDMYTSNILLQGLCREGMLEKALKLFNTWISKEKQLDAVT 371
            EG VEKAF+FHN+M++  FKPD++T NILL+GLC EGML+KALKLFNTWISK K +DAVT
Sbjct: 575  EGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAIDAVT 634

Query: 372  YNTLITALCKAGRIDDALVLITEMGEKKLGPDKYTYNAILSALTDAGRMEEAQDLVSKMI 551
            YNT+I+ LCK  R ++A  L+ EM EKKLGPD YTYNAILSAL DAGRM+EA++ +S+++
Sbjct: 635  YNTIISGLCKEDRFEEAFDLLAEMEEKKLGPDCYTYNAILSALADAGRMKEAEEFMSRIV 694

Query: 552  AMDKLSEGSPSLDKEE-DVTCKPQQELDSSSVSYSKHINELCCKGKYKDAIQTFGELSQR 728
               KL + + SL+K + + + +  QE D +SV++S+ INELC +GKYKDA+    E +Q+
Sbjct: 695  EQGKLQDQTISLNKRKIESSSETSQESDPNSVTFSEQINELCTQGKYKDAMHMVQESTQK 754

Query: 729  GITLEKSTYISLISGLLK 782
            GITL KSTYISL+ GL+K
Sbjct: 755  GITLHKSTYISLMEGLIK 772



 Score =  129 bits (324), Expect = 8e-28
 Identities = 79/269 (29%), Positives = 137/269 (50%), Gaps = 13/269 (4%)
 Frame = +3

Query: 15   DEMKSKDIRPSLITYNSIIGGLCKSGKTEQAINKLNELFEDGLFPDETTYNTIINGYCGE 194
            D+M+ K ++P+ +TYN ++    K GK + A N+L ++ E G  PD  T+NT+INGYC  
Sbjct: 376  DKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKA 435

Query: 195  GNVEKAFRFHNRMIENCFKPDMYTSNILLQGLCREGMLEKALKLFNTWISKEKQLDAVTY 374
            G + +AFR  + M     K +  T N +L  LC E  L+ A KL ++   +   +D V+Y
Sbjct: 436  GRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSY 495

Query: 375  NTLITALCKAGRIDDALVLITEMGEKKLGPDKYTYNAILSALTDAGRMEEAQDLVSKM-- 548
             TLI    K G+  +A+ L  EM EK++ P   TYN ++  L  +G+ +++ D ++++  
Sbjct: 496  GTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLE 555

Query: 549  --IAMDKLSEGSPSLDKEEDVTCKPQQELDSSSVSYSKH---------INELCCKGKYKD 695
              +  D+ +  +  L    +   +   +  +  V  S           +  LC +G    
Sbjct: 556  SGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDK 615

Query: 696  AIQTFGELSQRGITLEKSTYISLISGLLK 782
            A++ F     +G  ++  TY ++ISGL K
Sbjct: 616  ALKLFNTWISKGKAIDAVTYNTIISGLCK 644



 Score =  120 bits (301), Expect = 4e-25
 Identities = 77/274 (28%), Positives = 138/274 (50%), Gaps = 19/274 (6%)
 Frame = +3

Query: 18   EMKSKDIRPSLITYNSIIGGLCKSGKTEQAINKLNELFEDGLFPDETTYNTIINGYCGEG 197
            +MK     P  ++YN+I+  LCK GK  +A + L ++  +GL P+  T+N +++GYC  G
Sbjct: 237  KMKDFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLG 296

Query: 198  NVEKAFRFHNRMIENCFKPDMYTSNILLQGLCREGMLEKALKLFNTWISKEKQLDAVTYN 377
             +++A +  + M +N   PD++T N+L+ GLC++G +++A +L +   + +   D VTYN
Sbjct: 297  WLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYN 356

Query: 378  TLITALCKAGRIDDALVLITEMGEKKLGPDKYTYNAILSALTDAGRMEEAQDLVSKM--- 548
            TLI              LI +M  K + P+  TYN ++      G+M+ A + + KM   
Sbjct: 357  TLINGCFDCSSSLKGFELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEES 416

Query: 549  ----------------IAMDKLSEGSPSLDKEEDVTCKPQQELDSSSVSYSKHINELCCK 680
                                +LSE    +D+        ++ L  +SV+ +  ++ LC +
Sbjct: 417  GFSPDCVTFNTLINGYCKAGRLSEAFRMMDE------MSRKGLKMNSVTLNTILHTLCGE 470

Query: 681  GKYKDAIQTFGELSQRGITLEKSTYISLISGLLK 782
             K  DA +     S+RG  +++ +Y +LI G  K
Sbjct: 471  RKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFK 504



 Score =  116 bits (290), Expect = 7e-24
 Identities = 65/253 (25%), Positives = 124/253 (49%)
 Frame = +3

Query: 15   DEMKSKDIRPSLITYNSIIGGLCKSGKTEQAINKLNELFEDGLFPDETTYNTIINGYCGE 194
            DEM++  + P ++TYN++I G      + +    ++++   G+ P+  TYN ++  Y  E
Sbjct: 341  DEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKPNAVTYNVVVKWYVKE 400

Query: 195  GNVEKAFRFHNRMIENCFKPDMYTSNILLQGLCREGMLEKALKLFNTWISKEKQLDAVTY 374
            G ++ A     +M E+ F PD  T N L+ G C+ G L +A ++ +    K  ++++VT 
Sbjct: 401  GKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTL 460

Query: 375  NTLITALCKAGRIDDALVLITEMGEKKLGPDKYTYNAILSALTDAGRMEEAQDLVSKMIA 554
            NT++  LC   ++DDA  L++   ++    D+ +Y  ++      G+  EA  L  +M  
Sbjct: 461  NTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEM-- 518

Query: 555  MDKLSEGSPSLDKEEDVTCKPQQELDSSSVSYSKHINELCCKGKYKDAIQTFGELSQRGI 734
                                 ++E+  S ++Y+  I  LC  GK   +I    EL + G+
Sbjct: 519  --------------------KEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGL 558

Query: 735  TLEKSTYISLISG 773
              +++TY ++I G
Sbjct: 559  VPDETTYNTIILG 571



 Score =  113 bits (282), Expect = 6e-23
 Identities = 77/276 (27%), Positives = 127/276 (46%), Gaps = 19/276 (6%)
 Frame = +3

Query: 6    IFWDEMKSKDIRPSLITYNSIIGGLCKSGKTEQAINKLNELFEDGLFPDETTYNTIINGY 185
            IF D +K   ++ +  T+N +I G C   K  +AI  + ++ +   FPD  +YNTI++  
Sbjct: 199  IFSDVIKL-GVKVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVL 257

Query: 186  CGEGNVEKAFRFHNRMIENCFKPDMYTSNILLQGLCREGMLEKALKLFNTWISKEKQLDA 365
            C +G + +A      M  N   P+  T NIL+ G C+ G L++A ++ +         D 
Sbjct: 258  CKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDV 317

Query: 366  VTYNTLITALCKAGRIDDALVLITEMGEKKLGPDKYTYNAILSALTDAGRMEEAQDLVSK 545
             TYN LI  LCK G+ID+A  L  EM   KL PD  TYN +++   D     +  +L+ K
Sbjct: 318  WTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDK 377

Query: 546  M-------------------IAMDKLSEGSPSLDKEEDVTCKPQQELDSSSVSYSKHINE 668
            M                   +   K+      L K E+    P        V+++  IN 
Sbjct: 378  MEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSP------DCVTFNTLING 431

Query: 669  LCCKGKYKDAIQTFGELSQRGITLEKSTYISLISGL 776
             C  G+  +A +   E+S++G+ +   T  +++  L
Sbjct: 432  YCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTL 467



 Score = 87.8 bits (216), Expect = 3e-15
 Identities = 54/187 (28%), Positives = 85/187 (45%), Gaps = 23/187 (12%)
 Frame = +3

Query: 9    FWDEMKSKDIRPSLITYNSIIGGLCKSGKTEQAINKLNELFEDGLFPDETTYNTIINGYC 188
            F ++M  K  +P L T N ++ GLC  G  ++A+   N     G   D  TYNTII+G C
Sbjct: 584  FHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLC 643

Query: 189  GEGNVEKAFRFHNRMIENCFKPDMYTSNILLQGLCREGMLEKALKLFNTWI--------- 341
             E   E+AF     M E    PD YT N +L  L   G +++A +  +  +         
Sbjct: 644  KEDRFEEAFDLLAEMEEKKLGPDCYTYNAILSALADAGRMKEAEEFMSRIVEQGKLQDQT 703

Query: 342  --------------SKEKQLDAVTYNTLITALCKAGRIDDALVLITEMGEKKLGPDKYTY 479
                          S+E   ++VT++  I  LC  G+  DA+ ++ E  +K +   K TY
Sbjct: 704  ISLNKRKIESSSETSQESDPNSVTFSEQINELCTQGKYKDAMHMVQESTQKGITLHKSTY 763

Query: 480  NAILSAL 500
             +++  L
Sbjct: 764  ISLMEGL 770



 Score = 63.9 bits (154), Expect = 4e-08
 Identities = 56/211 (26%), Positives = 91/211 (43%), Gaps = 5/211 (2%)
 Frame = +3

Query: 165 NTIINGYCGEGNVEKAFRFHNRMIENCFKPDMYTSNILLQGLCR-----EGMLEKALKLF 329
           +T I  Y        A +  NRM     KP++ T N L+  L R        L KA  +F
Sbjct: 143 DTSIGAYVACNRPHHAAQIFNRMKRLHLKPNLLTCNTLINALVRYPSKPSVYLSKA--IF 200

Query: 330 NTWISKEKQLDAVTYNTLITALCKAGRIDDALVLITEMGEKKLGPDKYTYNAILSALTDA 509
           +  I    +++  T+N LI   C   ++ +A+ LI +M +    PD  +YN IL  L   
Sbjct: 201 SDVIKLGVKVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKK 260

Query: 510 GRMEEAQDLVSKMIAMDKLSEGSPSLDKEEDVTCKPQQELDSSSVSYSKHINELCCKGKY 689
           G++ EA+DL+     +D  + G                 L  +  +++  ++  C  G  
Sbjct: 261 GKLNEARDLL-----LDMKNNG-----------------LLPNRNTFNILVSGYCKLGWL 298

Query: 690 KDAIQTFGELSQRGITLEKSTYISLISGLLK 782
           K+A Q    ++Q  +  +  TY  LI GL K
Sbjct: 299 KEAAQVIDLMAQNNVLPDVWTYNMLIGGLCK 329


>ref|XP_002533225.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223526957|gb|EEF29157.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 605

 Score =  321 bits (822), Expect = 1e-85
 Identities = 154/258 (59%), Positives = 204/258 (79%), Gaps = 1/258 (0%)
 Frame = +3

Query: 12   WDEMKSKDIRPSLITYNSIIGGLCKSGKTEQAINKLNELFEDGLFPDETTYNTIINGYCG 191
            WDEMK K+I PS+ITY ++IGGLC+SGKT+Q+I+K NEL E GL PD+TTYNTII GYC 
Sbjct: 347  WDEMKEKEIIPSIITYGTMIGGLCRSGKTDQSIDKCNELLESGLVPDQTTYNTIILGYCR 406

Query: 192  EGNVEKAFRFHNRMIENCFKPDMYTSNILLQGLCREGMLEKALKLFNTWISKEKQLDAVT 371
            EG V+KAF F N+M++  FKPD++T NIL++GLC EGML+KALKLF TWISK K +DAVT
Sbjct: 407  EGQVDKAFHFRNKMVKKSFKPDLFTCNILVRGLCTEGMLDKALKLFKTWISKGKAIDAVT 466

Query: 372  YNTLITALCKAGRIDDALVLITEMGEKKLGPDKYTYNAILSALTDAGRMEEAQDLVSKMI 551
            +NT+I+ LC+ GR ++A  L+ EM EKKLGPD YT+NAILSAL DAGRM+EA++ +S ++
Sbjct: 467  FNTIISGLCEEGRFEEAFDLLAEMEEKKLGPDCYTHNAILSALADAGRMKEAEEFMSGIV 526

Query: 552  AMDKLSEGSPSLDKEE-DVTCKPQQELDSSSVSYSKHINELCCKGKYKDAIQTFGELSQR 728
               KL + + SL+K + + + +  QE D +SV++S+ INELC +GKYKDA+    E +Q+
Sbjct: 527  EQGKLQDQTISLNKRKTESSSETSQESDPNSVAFSEQINELCTQGKYKDAMHMIQESTQK 586

Query: 729  GITLEKSTYISLISGLLK 782
            GI L KSTYISL+ GL+K
Sbjct: 587  GIILHKSTYISLMEGLIK 604



 Score =  117 bits (293), Expect = 3e-24
 Identities = 76/262 (29%), Positives = 123/262 (46%), Gaps = 9/262 (3%)
 Frame = +3

Query: 15  DEMKSKDIRPSLITYNSIIGGLCKSGKTEQAINKLNELFEDGLFPDETTYNTIINGYCGE 194
           D M   ++ P + TY ++IGGLCK GK ++A    +E+    L P   TYN +ING    
Sbjct: 142 DIMARNNVLPDVRTYTTLIGGLCKDGKIDEAFRLRDEMENLKLLPHVVTYNMLINGCFEC 201

Query: 195 GNVEKAFRFHNRMIENCFKPDMYTSNILLQGLCREGMLEKALKLFNTWISKEKQLDAVTY 374
            +  K F   + M     KP+  T N++++   +EG ++ A              D VT+
Sbjct: 202 SSSLKGFELIDEMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTF 261

Query: 375 NTLITALCKAGRIDDALVLITEMGEKKLGPDKYTYNAILSALTDAGRMEEAQDLVSKM-- 548
           NTL    CKAGR+ +A  ++ EM  K L  +  T N IL  L    ++++A  L+S    
Sbjct: 262 NTLSNGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASK 321

Query: 549 -------IAMDKLSEGSPSLDKEEDVTCKPQQELDSSSVSYSKHINELCCKGKYKDAIQT 707
                  ++   L  G   + K        ++E+  S ++Y   I  LC  GK   +I  
Sbjct: 322 RGYFVDEVSYGTLIMGYFKVGKSXXWDEMKEKEIIPSIITYGTMIGGLCRSGKTDQSIDK 381

Query: 708 FGELSQRGITLEKSTYISLISG 773
             EL + G+  +++TY ++I G
Sbjct: 382 CNELLESGLVPDQTTYNTIILG 403



 Score =  115 bits (287), Expect = 2e-23
 Identities = 75/268 (27%), Positives = 134/268 (50%), Gaps = 13/268 (4%)
 Frame = +3

Query: 18  EMKSKDIRPSLITYNSIIGGLCKSGKTEQAINKLNELFEDGLFPDETTYNTIINGYCGEG 197
           +MK     P  ++YN+I+  LCK GK  +A + L ++  +GLFP+  T+N +++GYC  G
Sbjct: 73  KMKHFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLFPNRNTFNILVSGYCKLG 132

Query: 198 NVEKAFRFHNRMIENCFKPDMYTSNILLQGLCREGMLEKALKLFNTWISKEKQLDAVTYN 377
            +++A    + M  N   PD+ T   L+ GLC++G +++A +L +   + +     VTYN
Sbjct: 133 WLKEAAEVIDIMARNNVLPDVRTYTTLIGGLCKDGKIDEAFRLRDEMENLKLLPHVVTYN 192

Query: 378 TLITALCKAGRIDDALVLITEMGEKKLGPDKYTYNAILSALTDAGRMEEAQDLVSKM--- 548
            LI    +         LI EM  K + P+  TYN ++      G+M+ A + + KM   
Sbjct: 193 MLINGCFECSSSLKGFELIDEMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEES 252

Query: 549 ------IAMDKLSEGSPSLDKEED----VTCKPQQELDSSSVSYSKHINELCCKGKYKDA 698
                 +  + LS G     +  +    +    ++ L  +SV+ +  ++ LC + K  DA
Sbjct: 253 GFSPDCVTFNTLSNGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDA 312

Query: 699 IQTFGELSQRGITLEKSTYISLISGLLK 782
            +     S+RG  +++ +Y +LI G  K
Sbjct: 313 YKLLSSASKRGYFVDEVSYGTLIMGYFK 340



 Score =  102 bits (254), Expect = 1e-19
 Identities = 69/260 (26%), Positives = 116/260 (44%), Gaps = 19/260 (7%)
 Frame = +3

Query: 54  TYNSIIGGLCKSGKTEQAINKLNELFEDGLFPDETTYNTIINGYCGEGNVEKAFRFHNRM 233
           T+N +I G C   K  +AI  + ++     FPD  +YNTI++  C +G + +A      M
Sbjct: 50  TFNILICGCCIENKLSEAIGLIGKMKHFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDM 109

Query: 234 IENCFKPDMYTSNILLQGLCREGMLEKALKLFNTWISKEKQLDAVTYNTLITALCKAGRI 413
             N   P+  T NIL+ G C+ G L++A ++ +         D  TY TLI  LCK G+I
Sbjct: 110 KNNGLFPNRNTFNILVSGYCKLGWLKEAAEVIDIMARNNVLPDVRTYTTLIGGLCKDGKI 169

Query: 414 DDALVLITEMGEKKLGPDKYTYNAILSALTDAGRMEEAQDLVSKM--------------- 548
           D+A  L  EM   KL P   TYN +++   +     +  +L+ +M               
Sbjct: 170 DEAFRLRDEMENLKLLPHVVTYNMLINGCFECSSSLKGFELIDEMEGKGVKPNAVTYNVV 229

Query: 549 ----IAMDKLSEGSPSLDKEEDVTCKPQQELDSSSVSYSKHINELCCKGKYKDAIQTFGE 716
               +   K+      L K E+    P        V+++   N  C  G+  +A +   E
Sbjct: 230 VKWYVKEGKMDNAGNELRKMEESGFSP------DCVTFNTLSNGYCKAGRLSEAFRMMDE 283

Query: 717 LSQRGITLEKSTYISLISGL 776
           +S++G+ +   T  +++  L
Sbjct: 284 MSRKGLKMNSVTLNTILHTL 303



 Score = 84.3 bits (207), Expect = 3e-14
 Identities = 53/187 (28%), Positives = 84/187 (44%), Gaps = 23/187 (12%)
 Frame = +3

Query: 9   FWDEMKSKDIRPSLITYNSIIGGLCKSGKTEQAINKLNELFEDGLFPDETTYNTIINGYC 188
           F ++M  K  +P L T N ++ GLC  G  ++A+         G   D  T+NTII+G C
Sbjct: 416 FRNKMVKKSFKPDLFTCNILVRGLCTEGMLDKALKLFKTWISKGKAIDAVTFNTIISGLC 475

Query: 189 GEGNVEKAFRFHNRMIENCFKPDMYTSNILLQGLCREGMLEKALKLFNTWI--------- 341
            EG  E+AF     M E    PD YT N +L  L   G +++A +  +  +         
Sbjct: 476 EEGRFEEAFDLLAEMEEKKLGPDCYTHNAILSALADAGRMKEAEEFMSGIVEQGKLQDQT 535

Query: 342 --------------SKEKQLDAVTYNTLITALCKAGRIDDALVLITEMGEKKLGPDKYTY 479
                         S+E   ++V ++  I  LC  G+  DA+ +I E  +K +   K TY
Sbjct: 536 ISLNKRKTESSSETSQESDPNSVAFSEQINELCTQGKYKDAMHMIQESTQKGIILHKSTY 595

Query: 480 NAILSAL 500
            +++  L
Sbjct: 596 ISLMEGL 602



 Score = 57.8 bits (138), Expect = 3e-06
 Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 5/183 (2%)
 Frame = +3

Query: 249 KPDMYTSNILLQGLCR-----EGMLEKALKLFNTWISKEKQLDAVTYNTLITALCKAGRI 413
           KP++ T N L++ L R        L KA+  F+  I    +++  T+N LI   C   ++
Sbjct: 7   KPNLLTLNTLIKALVRYPSKPSVYLSKAI--FSDVIKLGVEVNTNTFNILICGCCIENKL 64

Query: 414 DDALVLITEMGEKKLGPDKYTYNAILSALTDAGRMEEAQDLVSKMIAMDKLSEGSPSLDK 593
            +A+ LI +M      PD  +YN IL  L   G++ EA+DL+     +D  + G      
Sbjct: 65  SEAIGLIGKMKHFSCFPDNVSYNTILDVLCKKGKLNEARDLL-----LDMKNNG------ 113

Query: 594 EEDVTCKPQQELDSSSVSYSKHINELCCKGKYKDAIQTFGELSQRGITLEKSTYISLISG 773
                      L  +  +++  ++  C  G  K+A +    +++  +  +  TY +LI G
Sbjct: 114 -----------LFPNRNTFNILVSGYCKLGWLKEAAEVIDIMARNNVLPDVRTYTTLIGG 162

Query: 774 LLK 782
           L K
Sbjct: 163 LCK 165


>ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like
            [Cucumis sativus] gi|449529106|ref|XP_004171542.1|
            PREDICTED: pentatricopeptide repeat-containing protein
            At2g16880-like [Cucumis sativus]
          Length = 783

 Score =  316 bits (810), Expect = 4e-84
 Identities = 152/258 (58%), Positives = 200/258 (77%), Gaps = 1/258 (0%)
 Frame = +3

Query: 12   WDEMKSKDIRPSLITYNSIIGGLCKSGKTEQAINKLNELFEDGLFPDETTYNTIINGYCG 191
            WDEMK + I PS ITYNS+IGGLC+S K +QAI+KLNE+ E+GL PDETTYN II+G+C 
Sbjct: 516  WDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFCL 575

Query: 192  EGNVEKAFRFHNRMIENCFKPDMYTSNILLQGLCREGMLEKALKLFNTWISKEKQLDAVT 371
            EGNVEKAF+FHN MIEN FKPD+YT NILL+GLCREGMLEKALKLFNT +SK K +D VT
Sbjct: 576  EGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVT 635

Query: 372  YNTLITALCKAGRIDDALVLITEMGEKKLGPDKYTYNAILSALTDAGRMEEAQDLVSKMI 551
            YNT+I++LCK G+ ++A  L+TEM  KKLGPD+YTY  I++ALTDAGR++EA++   KM+
Sbjct: 636  YNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAEEFTLKMV 695

Query: 552  AMDKLSEGSPSLDKEEDV-TCKPQQELDSSSVSYSKHINELCCKGKYKDAIQTFGELSQR 728
                + + +  L K ++V T +  +  D  S++YS  INELC + KYKDA+  F E+++ 
Sbjct: 696  ESGIVHDQNLKLGKGQNVLTSEVSEHFDFKSIAYSDQINELCNQHKYKDAMHLFVEVTKE 755

Query: 729  GITLEKSTYISLISGLLK 782
            G+ L K TY++L+ GL+K
Sbjct: 756  GVALNKYTYLNLMEGLIK 773



 Score =  123 bits (308), Expect = 6e-26
 Identities = 88/297 (29%), Positives = 138/297 (46%), Gaps = 36/297 (12%)
 Frame = +3

Query: 15   DEMKSKDIRPSLITYNSIIGGLCKSGKTEQAINKLNELFEDGLFPDETTYNTIINGYCGE 194
            +EM  K ++ + +TYN I+  +CK G   +A   L+++ E+GL PD  TYNT+I  YC  
Sbjct: 377  EEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKA 436

Query: 195  GNVEKAFRFHNRMIENCFKPDMYTSNILLQGLCREGMLEKALKL---------------- 326
            G + KAFR  + M     K D +T N +L  LC E  L++A  L                
Sbjct: 437  GKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSY 496

Query: 327  ----------------FNTWIS-KEKQL--DAVTYNTLITALCKAGRIDDALVLITEMGE 449
                             N W   KE+Q+    +TYN++I  LC++ ++D A+  + EM E
Sbjct: 497  GILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLE 556

Query: 450  KKLGPDKYTYNAILSALTDAGRMEEAQDLVSKMIAMDKLSEGSPSLDKEEDVTCKPQQEL 629
              L PD+ TYN I+      G +E+A    ++MI          +L K +  TC      
Sbjct: 557  NGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMI---------ENLFKPDVYTC------ 601

Query: 630  DSSSVSYSKHINELCCKGKYKDAIQTFGELSQRGITLEKSTYISLISGLLK-GEISN 797
                   +  +  LC +G  + A++ F  L  +G  ++  TY ++IS L K G+  N
Sbjct: 602  -------NILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFEN 651



 Score =  122 bits (307), Expect = 8e-26
 Identities = 84/307 (27%), Positives = 147/307 (47%), Gaps = 49/307 (15%)
 Frame = +3

Query: 18   EMKSKDIRPSLITYNSIIGGLCKSGKTEQAINKLNELFEDGLFPDETTYNTIINGYCGEG 197
            +MKSK + P+  TYN ++ G C+ G  ++A   +  +  + L P   TYN ++NG+C +G
Sbjct: 273  DMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDG 332

Query: 198  NVEKAFRF---------------HNRMIENC--------------------FKPDMYTSN 272
             +++AFR                +N +I+ C                     K +  T N
Sbjct: 333  KIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYN 392

Query: 273  ILLQGLCREGMLEKALKLFNTWISKEKQLDAVTYNTLITALCKAGRIDDALVLITEMGEK 452
            I+L+ +C++G + +A    +         D VTYNTLI A CKAG++  A  ++ EM  K
Sbjct: 393  IILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSK 452

Query: 453  KLGPDKYTYNAILSALTDAGRMEEAQDLV----SKMIAMDKLSEGSPSL----DKEEDVT 608
             L  D +T N IL  L    +++EA +L+     +   +D++S G   L    D++ D  
Sbjct: 453  GLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRA 512

Query: 609  CK-----PQQELDSSSVSYSKHINELCCKGKYKDAIQTFGELSQRGITLEKSTYISLISG 773
                    ++++  S+++Y+  I  LC   K   AI    E+ + G+  +++TY  +I G
Sbjct: 513  LNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHG 572

Query: 774  L-LKGEI 791
              L+G +
Sbjct: 573  FCLEGNV 579



 Score =  105 bits (263), Expect = 1e-20
 Identities = 69/254 (27%), Positives = 114/254 (44%)
 Frame = +3

Query: 15   DEMKSKDIRPSLITYNSIIGGLCKSGKTEQAINKLNELFEDGLFPDETTYNTIINGYCGE 194
            DEM SK ++    T N+I+  LC   K ++A N L    + G   DE +Y  +I GY  +
Sbjct: 447  DEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKD 506

Query: 195  GNVEKAFRFHNRMIENCFKPDMYTSNILLQGLCREGMLEKALKLFNTWISKEKQLDAVTY 374
               ++A    + M E    P   T N ++ GLC+   +++A+   N  +      D  TY
Sbjct: 507  EKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTY 566

Query: 375  NTLITALCKAGRIDDALVLITEMGEKKLGPDKYTYNAILSALTDAGRMEEAQDLVSKMIA 554
            N +I   C  G ++ A     EM E    PD YT N +L  L   G +E+A  L + +++
Sbjct: 567  NIIIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVS 626

Query: 555  MDKLSEGSPSLDKEEDVTCKPQQELDSSSVSYSKHINELCCKGKYKDAIQTFGELSQRGI 734
              K                      D   V+Y+  I+ LC +GK+++A     E+  + +
Sbjct: 627  KGK----------------------DIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKL 664

Query: 735  TLEKSTYISLISGL 776
              ++ TY  +I+ L
Sbjct: 665  GPDQYTYKVIIAAL 678



 Score =  100 bits (249), Expect = 4e-19
 Identities = 66/242 (27%), Positives = 115/242 (47%)
 Frame = +3

Query: 42  PSLITYNSIIGGLCKSGKTEQAINKLNELFEDGLFPDETTYNTIINGYCGEGNVEKAFRF 221
           P  ++YN+I+  L K    ++A + L ++   GL P++ TYN ++ GYC  G +++A + 
Sbjct: 246 PDTVSYNTILDALLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKV 305

Query: 222 HNRMIENCFKPDMYTSNILLQGLCREGMLEKALKLFNTWISKEKQLDAVTYNTLITALCK 401
              M  N   P ++T N+L+ G C +G +++A ++ +         D VTYNTLI    +
Sbjct: 306 IEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQ 365

Query: 402 AGRIDDALVLITEMGEKKLGPDKYTYNAILSALTDAGRMEEAQDLVSKMIAMDKLSEGSP 581
                +   LI EM +K +  +  TYN IL  +   G M EA                + 
Sbjct: 366 WRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEA----------------TT 409

Query: 582 SLDKEEDVTCKPQQELDSSSVSYSKHINELCCKGKYKDAIQTFGELSQRGITLEKSTYIS 761
           +LDK E      +  L    V+Y+  I   C  GK   A +   E++ +G+ ++  T  +
Sbjct: 410 TLDKME------ENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNT 463

Query: 762 LI 767
           ++
Sbjct: 464 IL 465



 Score =  100 bits (248), Expect = 5e-19
 Identities = 69/273 (25%), Positives = 132/273 (48%), Gaps = 16/273 (5%)
 Frame = +3

Query: 12  WDEMKSKDIRPSLITYNSIIGGLCK---SGKTEQAINKLNELFEDGLFPDETTYNTIING 182
           +++MK  + RP+L+T N+++  L +   S     A   L +  + G+ P+  ++N +I G
Sbjct: 163 FNKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYG 222

Query: 183 YCGEGNVEKAFRFHNRMIENCFKPDMYTSNILLQGLCREGMLEKALKLFNTWISKEKQLD 362
           YC E  V+ A  + N+M E    PD  + N +L  L +  +L++A  L     SK    +
Sbjct: 223 YCLESKVKDALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEARDLLLDMKSKGLSPN 282

Query: 363 AVTYNTLITALCKAGRIDDALVLITEMGEKKLGPDKYTYNAILSALTDAGRMEEA----- 527
             TYN L+   C+ G + +A  +I  M    L P  +TYN +++   + G+++EA     
Sbjct: 283 KHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRD 342

Query: 528 --------QDLVSKMIAMDKLSEGSPSLDKEEDVTCKPQQELDSSSVSYSKHINELCCKG 683
                    D+V+    +D  S+   S +    +    ++ +  ++V+Y+  +  +C KG
Sbjct: 343 EMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKG 402

Query: 684 KYKDAIQTFGELSQRGITLEKSTYISLISGLLK 782
              +A  T  ++ + G++ +  TY +LI    K
Sbjct: 403 NMTEATTTLDKMEENGLSPDCVTYNTLIGAYCK 435



 Score = 81.3 bits (199), Expect = 3e-13
 Identities = 52/187 (27%), Positives = 84/187 (44%), Gaps = 23/187 (12%)
 Frame = +3

Query: 9    FWDEMKSKDIRPSLITYNSIIGGLCKSGKTEQAINKLNELFEDGLFPDETTYNTIINGYC 188
            F +EM     +P + T N ++ GLC+ G  E+A+   N L   G   D  TYNTII+  C
Sbjct: 585  FHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLC 644

Query: 189  GEGNVEKAFRFHNRMIENCFKPDMYTSNILLQGLCREGMLEKA----LKLFNTWISKEKQ 356
             EG  E A+     M      PD YT  +++  L   G +++A    LK+  + I  ++ 
Sbjct: 645  KEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAEEFTLKMVESGIVHDQN 704

Query: 357  L-------------------DAVTYNTLITALCKAGRIDDALVLITEMGEKKLGPDKYTY 479
            L                    ++ Y+  I  LC   +  DA+ L  E+ ++ +  +KYTY
Sbjct: 705  LKLGKGQNVLTSEVSEHFDFKSIAYSDQINELCNQHKYKDAMHLFVEVTKEGVALNKYTY 764

Query: 480  NAILSAL 500
              ++  L
Sbjct: 765  LNLMEGL 771



 Score = 60.8 bits (146), Expect = 4e-07
 Identities = 55/230 (23%), Positives = 95/230 (41%), Gaps = 21/230 (9%)
 Frame = +3

Query: 147 PDETTYNTIINGYCGEGNVEKAFRFHNRMIENCFKPDMYTSNILLQGLCR---EGMLEKA 317
           P +   +T I  Y        A +  N+M    ++P++ T N L+  L R      +  A
Sbjct: 138 PSKELLDTSIGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLA 197

Query: 318 LKLFNTWISKEKQLDAVTYNTLITALCKAGRIDDALVLITEMGEKKLGPDKYTYNAILSA 497
            ++    I      +  ++N LI   C   ++ DAL  + +M E    PD  +YN IL A
Sbjct: 198 RQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILDA 257

Query: 498 LTDAGRMEEAQDLVSKMIAMDKLSEG-SPSLDKEEDVTC-----------------KPQQ 623
           L     ++EA+DL+     +D  S+G SP+      + C                   + 
Sbjct: 258 LLKRRLLQEARDLL-----LDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRN 312

Query: 624 ELDSSSVSYSKHINELCCKGKYKDAIQTFGELSQRGITLEKSTYISLISG 773
            L  +  +Y+  +N  C  GK  +A +   E+ +  +  +  TY +LI G
Sbjct: 313 NLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDG 362