BLASTX nr result
ID: Cnidium21_contig00034317
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00034317
(1851 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002306264.1| chromatin remodeling complex subunit [Populu... 334 5e-89
ref|XP_002264260.1| PREDICTED: DNA excision repair protein ERCC-... 331 3e-88
ref|XP_002309928.1| chromatin remodeling complex subunit [Populu... 330 6e-88
ref|XP_003524311.1| PREDICTED: DNA excision repair protein ERCC-... 327 7e-87
ref|XP_003532357.1| PREDICTED: DNA excision repair protein ERCC-... 326 1e-86
>ref|XP_002306264.1| chromatin remodeling complex subunit [Populus trichocarpa]
gi|222855713|gb|EEE93260.1| chromatin remodeling complex
subunit [Populus trichocarpa]
Length = 1058
Score = 334 bits (856), Expect = 5e-89
Identities = 207/577 (35%), Positives = 316/577 (54%), Gaps = 52/577 (9%)
Frame = +3
Query: 3 VKWLFKLHCIGQGGILADDMGLGKTRQVCVFLKGLFNTSSIERVLILTPPGLLENWESEL 182
++WL+ LHC G+GGIL DDMGLGKT Q+C FL GLF++ I+R L++ P LL +W EL
Sbjct: 375 LRWLWSLHCQGKGGILGDDMGLGKTMQICSFLAGLFHSKLIKRALVVAPKTLLSHWIKEL 434
Query: 183 RIVDLKCQKFR----KLAARDKA------SKGISLVSMALLEKYSREFFEGDFPFCK--- 323
+V L + L ARD KGI L + ++ S+ GD F
Sbjct: 435 SVVGLSAKTREYFGTSLKARDYELQYILQDKGILLTTYDIVRNNSKSL-RGDHYFIDDES 493
Query: 324 --------VIIDEGHVLKNPETIKARNVLKISVKDGGFIILSGTPIQNNLMEFYALLNIC 479
+I+DEGH++KNP T +A+++L+I I++SGTPIQNNL E +AL N C
Sbjct: 494 EDSYIWDYMILDEGHLIKNPSTQRAKSLLEIP--SAHCIVISGTPIQNNLKELWALFNFC 551
Query: 480 HRDQFGEINWFSSHYDEPIGSGIYRGLDPNVDVLVKKRVKELKSKIVSYYLRR------- 638
G+ WF Y+ PI G + + KEL+ +I Y+LRR
Sbjct: 552 CPGLLGDNKWFKETYEHPILRGNEKNASDREKRIGSTVAKELRERIQPYFLRRMKNEVFK 611
Query: 639 -DKGSTLALPAKHDLVIWLKLSPMQRNMYLAFLKLRDTKTGEFPVTFSAFEALQRLCSDP 815
D +T L K+++++WL+L+ QR +Y AFL+ + +A L+++C P
Sbjct: 612 EDDATTAKLSRKNEIIVWLRLTACQRQLYEAFLRSEIVLSAFDGSPLAALTILKKICDHP 671
Query: 816 TLWLSMNPTTELEISLNKIQNEAKAS---------------SDREFE------SVKLVFL 932
L L+ +L + + N A+ +D +F+ S K+ F+
Sbjct: 672 LL-LTKRAAEDLLEGMESMLNPEDAAVAEKLAMHLADVADRTDTDFQEKHDNISCKISFI 730
Query: 933 SELLPDIIKKEECVLIFSQYLRMLDAVQ-TLLKPKYKFLRLDGSMAPKKRDAVIEEFQSG 1109
LL ++I + VLIFSQ +ML+ +Q +L+ Y+F+R+DG+ R ++ +FQ G
Sbjct: 731 LSLLDNLIPEGHNVLIFSQTRKMLNLIQESLVSNGYEFIRIDGTTKATDRTKIVSDFQEG 790
Query: 1110 D-IPIFLLSYKVGALGFNLTKATRVVLLDPTWNPTNDEQAVDRAFRLNQTKRVIVYRLVC 1286
+ PIFLL+ +VG LG LTKA RV+++DP WNP+ D Q+VDRA+R+ Q K V+VYRL+
Sbjct: 791 NGAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQMKDVVVYRLMT 850
Query: 1287 CGTIEERVYRKQILKITLSRMIIGTQEPLRIFREEDNNNTFDVQERDFNSSATKNIIDTQ 1466
CG++EE++YRKQI K L R +E +R F ++D F + ++ FN S T+ + +
Sbjct: 851 CGSVEEKIYRKQIFKGGLFRTATENKEQIRYFSQQDLRELFSLPKQGFNISLTQQQLHEE 910
Query: 1467 LSICGQDKMPPSLKQYVDSLKSKDYIHGVSLHSLVVS 1577
Q KM L+ ++ L+++ I GVS HSL+ S
Sbjct: 911 HD--SQHKMDEFLESHIKFLETQG-IAGVSHHSLLFS 944
>ref|XP_002264260.1| PREDICTED: DNA excision repair protein ERCC-6-like [Vitis vinifera]
gi|296088517|emb|CBI37508.3| unnamed protein product
[Vitis vinifera]
Length = 1043
Score = 331 bits (849), Expect = 3e-88
Identities = 215/614 (35%), Positives = 322/614 (52%), Gaps = 49/614 (7%)
Frame = +3
Query: 3 VKWLFKLHCIGQGGILADDMGLGKTRQVCVFLKGLFNTSSIERVLILTPPGLLENWESEL 182
+KWL+ LHC G+GGIL DDMGLGKT Q+C FL GLF++ + R +++ P LL +W EL
Sbjct: 338 LKWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSCLLRRAVVVAPKTLLSHWIKEL 397
Query: 183 RIVDLK---------CQKFRKLAARDKAS-KGISLVSMALLEKYSREFFEG--------- 305
V L C K R+ + KG+ L + ++ S+ G
Sbjct: 398 SAVGLSEKTREYYGTCTKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLCGGNYFHDKRSE 457
Query: 306 -DFPFCKVIIDEGHVLKNPETIKARNVLKISVKDGGFIILSGTPIQNNLMEFYALLNICH 482
DF + +I+DEGH++KNP T +A+++++I I++SGTPIQNNL E +AL + C
Sbjct: 458 DDFTWDYMILDEGHLIKNPSTQRAKSLMEIPCAHR--IVVSGTPIQNNLKELWALFSFCC 515
Query: 483 RDQFGEINWFSSHYDEPIGSGIYRGLDPNVDVLVKKRVKELKSKIVSYYLRR-------- 638
+ G+ NWF Y+ PI G + + + KEL+ +I Y+LRR
Sbjct: 516 PELLGDKNWFKVKYESPILRGNDKNASDREKHISSRVAKELRERIQPYFLRRLKNEVFHE 575
Query: 639 -DKGSTLALPAKHDLVIWLKLSPMQRNMYLAFLKLRDTKTGEFPVTFSAFEALQRLCSDP 815
D T L K+++++WL+L+ QR +Y AFL + +A L+++C P
Sbjct: 576 DDASETAKLSKKNEIIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAAITILKKICDHP 635
Query: 816 TLWL------------SMNPTTELEISLNKIQNEAKASSDREF------ESVKLVFLSEL 941
L SM +L ++ + A A +F S K+ F+ L
Sbjct: 636 LLLTKRAVEDVLEGMDSMLNQEDLGMASKLAMHLATAYERDDFLEKNDNVSSKMSFILAL 695
Query: 942 LPDIIKKEECVLIFSQYLRMLDAVQTLLKPK-YKFLRLDGSMAPKKRDAVIEEFQSG-DI 1115
L +I + VLIFSQ +ML+ ++ LL YKFLR+DG+ R ++ +FQ G
Sbjct: 696 LDTLIPEGHNVLIFSQTRKMLNLIEELLISNGYKFLRIDGTTKANDRVKIVNDFQDGVGA 755
Query: 1116 PIFLLSYKVGALGFNLTKATRVVLLDPTWNPTNDEQAVDRAFRLNQTKRVIVYRLVCCGT 1295
PIFLL+ +VG LG LTKA RV+++DP WNP+ D Q+VDRA+R+ QTK VIVYRL+ CGT
Sbjct: 756 PIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQTKDVIVYRLMTCGT 815
Query: 1296 IEERVYRKQILKITLSRMIIGTQEPLRIFREEDNNNTFDVQERDFNSSATKNIIDTQLSI 1475
IEE++YRKQI K L R +E R F ++D F + + F+ S T+ + +
Sbjct: 816 IEEKIYRKQIFKGGLFRTATEHKEQTRYFSQQDLQELFSLPKHGFDVSVTQQQLHEEHD- 874
Query: 1476 CGQDKMPPSLKQYVDSLKSKDYIHGVSLHSLVVSAVDRLKSDGRTVIQSRDVSSCISRTQ 1655
Q M SLK+++ L+++ I GVS H+L+ S R+ V+ + + SRT
Sbjct: 875 -HQHNMDESLKEHIKFLETQG-IAGVSHHNLLFSKTARV-----LVVDEEEEVARASRTG 927
Query: 1656 NNYQQQPVARQPHQ 1697
A H+
Sbjct: 928 TTSVMNKSAGSSHE 941
>ref|XP_002309928.1| chromatin remodeling complex subunit [Populus trichocarpa]
gi|222852831|gb|EEE90378.1| chromatin remodeling complex
subunit [Populus trichocarpa]
Length = 1108
Score = 330 bits (847), Expect = 6e-88
Identities = 212/612 (34%), Positives = 335/612 (54%), Gaps = 58/612 (9%)
Frame = +3
Query: 3 VKWLFKLHCIGQGGILADDMGLGKTRQVCVFLKGLFNTSSIERVLILTPPGLLENWESEL 182
++WL+ LHC G+GGIL DDMGLGKT Q+C FL GLF++ I+RVL++ P LL +W EL
Sbjct: 397 LRWLWSLHCKGKGGILGDDMGLGKTMQICSFLAGLFHSKLIKRVLVVAPKTLLTHWIKEL 456
Query: 183 RIVDL--KCQKF--RKLAARDKA------SKGISLVSMALLEKYSR----------EFFE 302
+V L K +++ L ARD KGI L + ++ S+ E E
Sbjct: 457 SVVGLSGKTREYFGTSLKARDYELQYILQDKGILLTTYDIVRNNSKSLRGDHYFLDEESE 516
Query: 303 GDFPFCKVIIDEGHVLKNPETIKARNVLKISVKDGGFIILSGTPIQNNLMEFYALLNICH 482
+ + +I+DEGH++KNP T +A+++++I I++SGTPIQNNL E +AL N C
Sbjct: 517 DSYIWDYMILDEGHLIKNPSTQRAKSLIEIP--SAHCIVISGTPIQNNLKELWALFNFCC 574
Query: 483 RDQFGEINWFSSHYDEPIGSGIYRGLDPNVDVLVKKRVKELKSKIVSYYLRR-------- 638
D G+ WF Y+ PI G + + EL+ +I Y+LRR
Sbjct: 575 PDLLGDNKWFKQTYEHPILRGNEKNASDREKRIGSTVAMELRERIQPYFLRRMKNEVFKE 634
Query: 639 DKGSTLALPAKHDLVIWLKLSPMQ--------RNMYLAFLKLRDTKTGEFPVTFSAFEAL 794
D +T L K+++++WL+L+ Q R +Y AFL+ + +A L
Sbjct: 635 DDATTAKLSRKNEIIVWLRLTTCQQLRPLLCQRQLYEAFLRSEIVLSAFDGSPLAALTIL 694
Query: 795 QRLCSDPTLWL------------SMNPTTELEISLNKIQNEAKASSDREFE------SVK 920
+++C P L SM ++ ++ + A + +F+ S K
Sbjct: 695 KKICDHPLLLTKRAAEDLLEGMESMLNPEDVAVAEKLAMHVADVAERTDFQEKHDSISCK 754
Query: 921 LVFLSELLPDIIKKEECVLIFSQYLRMLDAVQ-TLLKPKYKFLRLDGSMAPKKRDAVIEE 1097
+ F+ LL ++I + VLIFSQ +ML+ ++ +L+ Y+FLR+DG+ R ++++
Sbjct: 755 ISFVLSLLDNLIPEGHNVLIFSQTRKMLNLIEESLVSNGYEFLRIDGTTKVTDRAKIVDD 814
Query: 1098 FQSGD-IPIFLLSYKVGALGFNLTKATRVVLLDPTWNPTNDEQAVDRAFRLNQTKRVIVY 1274
FQ G+ PIFLL+ +VG LG LTKA RV+++DP WNP+ D Q+VDRA+R+ Q K V+VY
Sbjct: 815 FQEGNGAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVY 874
Query: 1275 RLVCCGTIEERVYRKQILKITLSRMIIGTQEPLRIFREEDNNNTFDVQERDFNSSATKNI 1454
RL+ CGT+EE++YRKQI K L R +E +R F ++D F + ++ FN S T+
Sbjct: 875 RLMTCGTVEEKIYRKQIFKGGLFRTATENKEQIRYFSQQDLRELFSLPKQGFNISLTQQQ 934
Query: 1455 IDTQLSICGQDKMPPSLKQYVDSLKSKDYIHGVSLHSLVVSAVD--RLKSDGRTVIQSRD 1628
+ + Q KM L+ ++ L+S+ I GVS HSL+ S + +L + I+ +
Sbjct: 935 LHEEHD--SQHKMDEYLESHIKFLESQG-IAGVSHHSLLFSKTETVQLAQEEEDEIRKK- 990
Query: 1629 VSSCISRTQNNY 1664
VS+ + + ++Y
Sbjct: 991 VSTMVGNSSSSY 1002
>ref|XP_003524311.1| PREDICTED: DNA excision repair protein ERCC-6-like [Glycine max]
Length = 938
Score = 327 bits (838), Expect = 7e-87
Identities = 203/586 (34%), Positives = 320/586 (54%), Gaps = 53/586 (9%)
Frame = +3
Query: 3 VKWLFKLHCIGQGGILADDMGLGKTRQVCVFLKGLFNTSSIERVLILTPPGLLENWESEL 182
+KWL+ LHC+G+GGIL DDMGLGKT Q+C FL GLF++ I R LI+ P LL +W EL
Sbjct: 269 LKWLWSLHCLGKGGILGDDMGLGKTMQMCGFLAGLFHSRLIRRALIVAPKTLLPHWIKEL 328
Query: 183 RIVDLKCQKFRKLAARDKA----------SKGISLVSMALLEKYSRE-----FFEGD--- 308
V L + K KG+ L + ++ S+ +F+ +
Sbjct: 329 SAVGLSEKTREYFGTSTKLREYELQYILQDKGVLLTTYDIVRNNSKSLQGNNYFDDEDNE 388
Query: 309 --FPFCKVIIDEGHVLKNPETIKARNVLKISVKDGGFIILSGTPIQNNLMEFYALLNICH 482
+ +I+DEGH++KNP T +A+++L+I II+SGTP+QNNL E +AL N C
Sbjct: 389 EGVTWDYMILDEGHLIKNPSTQRAKSLLEIP--SAHCIIISGTPLQNNLKELWALFNFCC 446
Query: 483 RDQFGEINWFSSHYDEPIGSGIYRGLDPNVDVLVKKR----VKELKSKIVSYYLRR---- 638
+ G+ WF ++ PI RG D + K+ KEL+ I Y+LRR
Sbjct: 447 PELLGDHEWFKERFENPI----LRGNDKHASYREKRVGSSVAKELRDCIHPYFLRRLKSE 502
Query: 639 -----DKGSTLALPAKHDLVIWLKLSPMQRNMYLAFLKLRDTKTGEFPVTFSAFEALQRL 803
D+ +T L K ++++WL+L+ +QR++Y AFL + + +A L+++
Sbjct: 503 IFNQDDEKTTTKLSQKQEIIVWLRLTSVQRHLYEAFLNSKIVLSAIDGSPLAAITILKKI 562
Query: 804 CSDPTLWLSM------------------NPTTELEISLNKIQNEAKASSDREFESVKLVF 929
C P L N +L + + + + K D++ S K+ F
Sbjct: 563 CDHPHLLTKRAAEGVLEGIDSMLKPEEANVAEKLAMHIADVAGKDKFK-DKQDVSCKISF 621
Query: 930 LSELLPDIIKKEECVLIFSQYLRMLDAVQT-LLKPKYKFLRLDGSMAPKKRDAVIEEFQS 1106
+ LL ++I + CVLIFSQ +ML+ ++ L+ Y FLR+DG+ R ++ +FQ
Sbjct: 622 IMSLLDNLIPEGHCVLIFSQTRKMLNLIEECLVSEGYDFLRIDGTTKASDRLKIVNDFQE 681
Query: 1107 G-DIPIFLLSYKVGALGFNLTKATRVVLLDPTWNPTNDEQAVDRAFRLNQTKRVIVYRLV 1283
G PIFLL+ +VG LG LT+A RV+++DP+WNP+ D Q+VDRA+R+ Q K V+VYRL+
Sbjct: 682 GFGAPIFLLTSQVGGLGLTLTRADRVIVVDPSWNPSTDNQSVDRAYRIGQKKDVLVYRLM 741
Query: 1284 CCGTIEERVYRKQILKITLSRMIIGTQEPLRIFREEDNNNTFDVQERDFNSSATKNIIDT 1463
CGT+EE++YRKQ+ K L ++ +E +R F ++D F + + F+ S T+ ++
Sbjct: 742 TCGTVEEKIYRKQVYKGGLFKIATEHKEQIRYFSQQDLRGLFSLPKEGFDVSVTQRQLNE 801
Query: 1464 QLSICGQDKMPPSLKQYVDSLKSKDYIHGVSLHSLVVSAVDRLKSD 1601
+ Q + S K ++ LKS+ I GVS HSL+ S + +++D
Sbjct: 802 EHD--RQHTVDDSFKAHIKFLKSQG-IAGVSHHSLLFSKAEPVRAD 844
>ref|XP_003532357.1| PREDICTED: DNA excision repair protein ERCC-6-like [Glycine max]
Length = 1030
Score = 326 bits (836), Expect = 1e-86
Identities = 203/581 (34%), Positives = 313/581 (53%), Gaps = 48/581 (8%)
Frame = +3
Query: 3 VKWLFKLHCIGQGGILADDMGLGKTRQVCVFLKGLFNTSSIERVLILTPPGLLENWESEL 182
+KWL+ LHC+G+GGIL DDMGLGKT Q+C FL GLF++ I RVLI+ P LL +W EL
Sbjct: 334 LKWLWSLHCLGKGGILGDDMGLGKTMQMCGFLAGLFHSRLIRRVLIVAPKTLLPHWIKEL 393
Query: 183 RIVDLKCQKFRKLAARDK----------ASKGISLVSMALLEKYSR----------EFFE 302
V L + K G+ L + ++ S+ E E
Sbjct: 394 SAVGLSEKTREYFGTSTKLREYELQYILQDNGVLLTTYDIVRNNSKSLQGNNYFDDEDNE 453
Query: 303 GDFPFCKVIIDEGHVLKNPETIKARNVLKISVKDGGFIILSGTPIQNNLMEFYALLNICH 482
+ +I+DEGH++KNP T +A+++L+I II+SGTP+QNNL E +AL N C
Sbjct: 454 EGATWDYMILDEGHLIKNPSTQRAKSLLEI--PSAHRIIISGTPLQNNLKELWALFNFCC 511
Query: 483 RDQFGEINWFSSHYDEPIGSGIYRGLDPNVDVLVKKRVKELKSKIVSYYLRR-------- 638
+ G+ WF ++ PI G + + KEL+ +I Y+LRR
Sbjct: 512 PELLGDHKWFKERFENPILRGNDKHASDREKRVGSSVAKELRDRIHPYFLRRLKSEVFNQ 571
Query: 639 -DKGSTLALPAKHDLVIWLKLSPMQRNMYLAFLKLRDTKTGEFPVTFSAFEALQRLCSDP 815
D+ +T L K ++++WL+L+ +QR++Y AFLK + +A L+++C P
Sbjct: 572 DDEKTTAKLSQKQEIIVWLRLTSVQRHLYEAFLKSEIVLSAFDGSPLAALTILKKICDHP 631
Query: 816 TLWL------------SMNPTTELEISLNKIQNEAKASSDREFE-----SVKLVFLSELL 944
L SM E ++ + A + +F+ S K+ F+ LL
Sbjct: 632 LLLTKRAAEDVLEGMDSMLKPEEANVAEKLAMHIADVAGTDKFKDEQDVSCKISFIMSLL 691
Query: 945 PDIIKKEECVLIFSQYLRMLDAVQ-TLLKPKYKFLRLDGSMAPKKRDAVIEEFQSG-DIP 1118
++I + CVLIFSQ +ML+ +Q L+ Y FLR+DG+ R ++ +FQ G P
Sbjct: 692 DNLIPEGHCVLIFSQTRKMLNLIQECLVSEGYDFLRIDGTTKATDRLKIVNDFQEGFGAP 751
Query: 1119 IFLLSYKVGALGFNLTKATRVVLLDPTWNPTNDEQAVDRAFRLNQTKRVIVYRLVCCGTI 1298
IFLL+ +VG LG LT+A RV+++DP WNP+ D Q+VDRA+R+ Q K V+VYRL+ CGT+
Sbjct: 752 IFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVLVYRLMTCGTV 811
Query: 1299 EERVYRKQILKITLSRMIIGTQEPLRIFREEDNNNTFDVQERDFNSSATKNIIDTQLSIC 1478
EE++YRKQ+ K L + +E +R F ++D F + + F+ S T+ ++ +
Sbjct: 812 EEKIYRKQVYKGGLFKTATEHKEQIRYFSQQDLRELFSLPKEGFDVSVTQRQLNEEHD-- 869
Query: 1479 GQDKMPPSLKQYVDSLKSKDYIHGVSLHSLVVSAVDRLKSD 1601
Q + S + +++ LKS I GVS HSL+ S +++D
Sbjct: 870 RQHTVDDSFRAHLEFLKSHS-IAGVSHHSLLFSKTAPVRTD 909