BLASTX nr result

ID: Cnidium21_contig00034199 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00034199
         (544 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003631193.1| PREDICTED: uncharacterized protein LOC100247...    85   6e-15
ref|XP_002329920.1| chromatin remodeling complex subunit [Populu...    70   3e-10
ref|XP_002303505.1| chromatin remodeling complex subunit [Populu...    64   2e-08
ref|XP_003524120.1| PREDICTED: uncharacterized protein LOC100793...    59   5e-07
ref|XP_003608515.1| Chromodomain-helicase-DNA-binding protein, p...    58   8e-07

>ref|XP_003631193.1| PREDICTED: uncharacterized protein LOC100247555 [Vitis vinifera]
          Length = 2355

 Score = 85.1 bits (209), Expect = 6e-15
 Identities = 60/184 (32%), Positives = 91/184 (49%), Gaps = 4/184 (2%)
 Frame = -1

Query: 544 QVDRVLGCRVRGGEINSLKCGMVVDTHDQPAKRSVSSDVSYRAPEKITSCDPPLDGGATE 365
           QVDRVLGCRV+G   NS     V    D P+   +  +   R+PE+I S D  LDG   E
Sbjct: 407 QVDRVLGCRVQGDNTNSSCHISVTVPTDLPSDNVLIPENQNRSPEEILSGDVDLDGETAE 466

Query: 364 NSSKAAEDNFNQFDAAKIVKKGSELDKSSVDKRSMVKECSEGNSADAMASDIKVTDSNAL 185
              +  +   N F+  K +K    +DK +V +RS  KEC EGN+ +      K   S A+
Sbjct: 467 KLHEGCQGMTNCFEGEKNIKNDVRVDKINVYRRSATKECREGNAMNTERRCAK--SSTAI 524

Query: 184 NSRKEGICAVSLSTEDLARTAGKKAMGESTNFIS----DNDEITERLEMSLPQENADAQV 17
           + + +   AV  +TE+L +   +K + E +  ++    +NDE  +  E  +  EN D   
Sbjct: 525 DGKDQDQSAV--TTENLRKQPTEKMVIEDSTNVTLRSHENDESPKICETPVSHENKDTDA 582

Query: 16  DLEI 5
           D E+
Sbjct: 583 DTEM 586


>ref|XP_002329920.1| chromatin remodeling complex subunit [Populus trichocarpa]
           gi|222871157|gb|EEF08288.1| chromatin remodeling complex
           subunit [Populus trichocarpa]
          Length = 2332

 Score = 69.7 bits (169), Expect = 3e-10
 Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 3/178 (1%)
 Frame = -1

Query: 544 QVDRVLGCRVRGGEINSLKCGMVVDTHDQPAKRSVSSDVSYRAPEKITSCDPPLDGGATE 365
           QVDRVLGCR+ G   +   C  ++  +D+P+   + S+      E+  + D   D G  E
Sbjct: 395 QVDRVLGCRIEGENASLSCCTSLISKNDRPSDELLISETENGHLEEKAAGDTYSDLGVAE 454

Query: 364 NSSKAAEDNFNQFDAAKIVKKGSELDKSSVDKRSMVKECSEGNSADAMASDIKVTDSNAL 185
           N  +         +  + VK    +D   V +RS  K+   GNS D +  D K + S  +
Sbjct: 455 NHVEGHPGVIESSEKDESVKNDIRVDTIRVYRRSASKDYKGGNSKDLLGKDGKDSGSGGI 514

Query: 184 NSRKEGICAVSLSTEDLARTAGKKAMGESTNFI---SDNDEITERLEMSLPQENADAQ 20
           + + +   AV  +TE + +      + E+T+F    SD D+I+E  EM +  E  D +
Sbjct: 515 SGKDQDESAV--TTEVMVKRHENPVIEETTDFCLKNSDADQISEVCEMHVSPETKDTK 570


>ref|XP_002303505.1| chromatin remodeling complex subunit [Populus trichocarpa]
           gi|222840937|gb|EEE78484.1| chromatin remodeling complex
           subunit [Populus trichocarpa]
          Length = 2327

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 2/182 (1%)
 Frame = -1

Query: 544 QVDRVLGCRVRGGEINSLKCGMVVDTHDQPAKRSVSSDVSYRAPEKITSCDPPLDGGATE 365
           QVDRVLGCR++G   +S      +  +DQ +   +  +      E    CD   D G  E
Sbjct: 397 QVDRVLGCRIQGDNTSSSCVTFQITKNDQLSDELLIPEFENGHLEVKAVCDVDSDAGIAE 456

Query: 364 NSSKAAEDNFNQFDAAKIVKKGSELDKSSVDKRSMVKECSEGNSADAMASDIKVTDSNAL 185
           N  +   D     +    V+    +D   V +RS  K+C  GN+ D +  D K + S  +
Sbjct: 457 NHVEGHPDIIESSEKDVSVRNDIRVDTIRVYRRSASKDCKGGNNKDLLGKDGKDSGSGGI 516

Query: 184 NSRKEGICAVSLSTEDLARTAGKKAMGESTNFI--SDNDEITERLEMSLPQENADAQVDL 11
           +   +   A+  +TE  A+      + E+T+F       +I+E  E  +  +  D + D+
Sbjct: 517 SGTDQDESAI--TTEVTAKRHENPVIEETTDFCLKGSRVQISEVCETHVSSKIKDRKEDV 574

Query: 10  EI 5
           EI
Sbjct: 575 EI 576


>ref|XP_003524120.1| PREDICTED: uncharacterized protein LOC100793933 [Glycine max]
          Length = 2325

 Score = 58.9 bits (141), Expect = 5e-07
 Identities = 50/185 (27%), Positives = 81/185 (43%), Gaps = 6/185 (3%)
 Frame = -1

Query: 544 QVDRVLGCRVRGGEINSLKCGMVVDTHDQPAKRSVSSDVSYRAPEKITSCDPPLDGGATE 365
           QVDRVLGCR++G   NS +   +    D P+   V  +   R  ++ ++C   LD  +TE
Sbjct: 393 QVDRVLGCRIQGENANSSRHLSLNVVGDSPSGDLVILENQSRLLDENSACANDLDVESTE 452

Query: 364 NSSKAAEDNFNQFDAAKIVKKGSELDKSSVDKRSMVKECSEGNSADAMA---SDIKVTDS 194
           N     + N    D   I+K    ++   V +RS+ KE  +GN  D+++    D+   D 
Sbjct: 453 NHIDDRQ-NVKSSDEEGILKNTDRVEGIHVYRRSITKESKKGNPVDSLSKATDDLGPCDG 511

Query: 193 NALNSRKEGICAVSLSTEDLARTAGKKAMGESTNFI---SDNDEITERLEMSLPQENADA 23
           +  +     +     S E L +   K    E  N      DN EI +  E+ L  E    
Sbjct: 512 DGKDQDDSAV-----SAEQLEKPTDKVETEEIINVALRSEDNSEIPKNCEIHLSLETKQK 566

Query: 22  QVDLE 8
           +++ E
Sbjct: 567 EMNAE 571


>ref|XP_003608515.1| Chromodomain-helicase-DNA-binding protein, partial [Medicago
           truncatula] gi|355509570|gb|AES90712.1|
           Chromodomain-helicase-DNA-binding protein, partial
           [Medicago truncatula]
          Length = 1406

 Score = 58.2 bits (139), Expect = 8e-07
 Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 3/182 (1%)
 Frame = -1

Query: 544 QVDRVLGCRVRGGEINSLKCGMVVDTHDQPAKRSVSSDVSYRAPEKITSCDPPLDGGATE 365
           QVD+VLGCR++G + NS++   +    D P+   V S+   R  E  ++CD  LDG   E
Sbjct: 393 QVDQVLGCRIQGEDTNSIRQLSLKVGDDSPSGDLVMSENQTRLAEDNSACDNDLDGEIAE 452

Query: 364 NSSKAAEDNFNQFDAAKIVKKGSELDKSSVDKRSMVKECSEGNSADAMASDIKVTDSNAL 185
           N     + N    D  ++      ++K  V +RS+ KE   GN  ++++       S A 
Sbjct: 453 NLVHDPQ-NVKSSDEGEL-HNTDRVEKIHVYRRSITKESKNGNLLNSLSKATDDLGSCAR 510

Query: 184 NSRKEGICAVSLSTEDLARTAGKKAMGESTNFI---SDNDEITERLEMSLPQENADAQVD 14
           +   +   AV  S E L +   K    E+ N +     N ++    EM    E    +V 
Sbjct: 511 DGTDQDDYAV--SDEQLEKENDKLETEENLNVVLRGDGNSKLPNNCEMHDSLETKQKEVV 568

Query: 13  LE 8
           LE
Sbjct: 569 LE 570


Top