BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00034070
         (518 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEM44891.1| RNA polymerase beta chain [Olinia emarginata]           59   5e-07
gb|ADD31150.1| RNA polymerase beta'' subunit protein [Aucuba jap...    59   5e-07
gb|ABV65701.1| RNA polymerase beta'' subunit, partial (chloropla...    59   5e-07
gb|ABA27050.1| TO73-1 [Taraxacum officinale]                           58   7e-07
ref|YP_398318.1| RNA polymerase beta'' subunit [Lactuca sativa] ...    58   7e-07

>gb|AEM44891.1| RNA polymerase beta chain [Olinia emarginata]
          Length = 393

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 32/48 (66%), Positives = 33/48 (68%)
 Frame = -1

Query: 266 ESWAFLNVQVDKVVI*SATHSLATP*AIFHSHYGEILYEADTLVIFIY 123
           +S   L VQVD VVI SA   LATP A  H HYGEILYE DTLV FIY
Sbjct: 210 KSGQVLVVQVDSVVIRSAKPYLATPGATIHGHYGEILYEGDTLVTFIY 257


>gb|ADD31150.1| RNA polymerase beta'' subunit protein [Aucuba japonica]
          Length = 1390

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 32/48 (66%), Positives = 33/48 (68%)
 Frame = -1

Query: 266  ESWAFLNVQVDKVVI*SATHSLATP*AIFHSHYGEILYEADTLVIFIY 123
            +S   L VQVD VVI SA   LATP A  H HYGEILYE DTLV FIY
Sbjct: 1089 KSGQVLIVQVDSVVIRSAKSYLATPGATVHGHYGEILYEGDTLVTFIY 1136


>gb|ABV65701.1| RNA polymerase beta'' subunit, partial (chloroplast) [Ailanthus
            altissima]
          Length = 1279

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 32/48 (66%), Positives = 33/48 (68%)
 Frame = -1

Query: 266  ESWAFLNVQVDKVVI*SATHSLATP*AIFHSHYGEILYEADTLVIFIY 123
            +S   L VQVD VVI SA   LATP A  H HYGEILYE DTLV FIY
Sbjct: 1071 KSGQVLIVQVDSVVIRSAKPYLATPGATLHGHYGEILYEGDTLVTFIY 1118


>gb|ABA27050.1| TO73-1 [Taraxacum officinale]
          Length = 71

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 32/48 (66%), Positives = 33/48 (68%)
 Frame = -1

Query: 266 ESWAFLNVQVDKVVI*SATHSLATP*AIFHSHYGEILYEADTLVIFIY 123
           +S   L VQVD VVI SA   LATP A  H HYGEILYE DTLV FIY
Sbjct: 1   KSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIY 48


>ref|YP_398318.1| RNA polymerase beta'' subunit [Lactuca sativa]
            gi|85700399|sp|Q56P11.2|RPOC2_LACSA RecName:
            Full=DNA-directed RNA polymerase subunit beta''; AltName:
            Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
            subunit beta''; Short=RNA polymerase subunit beta''
            gi|78675157|dbj|BAE47583.1| RNA polymerase beta'' subunit
            [Lactuca sativa] gi|88656972|gb|ABD47222.1| RNA
            polymerase beta' subunit [Lactuca sativa]
          Length = 1381

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 32/48 (66%), Positives = 33/48 (68%)
 Frame = -1

Query: 266  ESWAFLNVQVDKVVI*SATHSLATP*AIFHSHYGEILYEADTLVIFIY 123
            +S   L VQVD VVI SA   LATP A  H HYGEILYE DTLV FIY
Sbjct: 1084 KSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIY 1131