BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00033838
         (575 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002311842.1| predicted protein [Populus trichocarpa] gi|2...   115   4e-24
gb|AAD20433.1| putative retroelement pol polyprotein [Arabidopsi...   111   1e-22
gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsi...   106   2e-21
gb|ABW81018.1| gag-pol polymerase [Arabidopsis lyrata subsp. lyr...   105   7e-21
dbj|BAK61840.1| gag-pol polyprotein [Citrus unshiu]                   103   2e-20

>ref|XP_002311842.1| predicted protein [Populus trichocarpa] gi|222851662|gb|EEE89209.1|
           predicted protein [Populus trichocarpa]
          Length = 324

 Score =  115 bits (289), Expect = 4e-24
 Identities = 61/161 (37%), Positives = 93/161 (57%)
 Frame = +1

Query: 7   KWVHHPHSDALVVRVKIGANNIHRVLVDNGSSVNVLAYEVYQKMGLLDKDLSPTSGHLYG 186
           K V HP+ DALV+ + +  + ++++L+D+ + VN+L  E   KMG+    ++     L G
Sbjct: 98  KGVRHPYEDALVISIVMKGHRVYKILIDDSNLVNILLAEAMTKMGMNASRMTLVPTPLIG 157

Query: 187 FAGASVSVKGLVRLPITLGEAPCMTSQVADFMVVDHPSAYNAIVGRPILKEMRVVTSIYH 366
             G++V +KG V L IT+G AP   +    FMV+D    YNAI+ RP+L ++ VV S  +
Sbjct: 158 IEGSAVPMKGAVGLTITIGTAPHYVTLQQTFMVIDTHLPYNAIIRRPLLHQISVVVSTKY 217

Query: 367 LSMKFPTPNGIGCVKGTQYESRDCYNKALRSAQKGSTSAPE 489
           L+MKFPT   +  VKG Q  SR+C N  L+  +      PE
Sbjct: 218 LTMKFPTVKVVVVVKGNQEASRECANTCLKGKKALLVDYPE 258


>gb|AAD20433.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 889

 Score =  111 bits (277), Expect = 1e-22
 Identities = 63/163 (38%), Positives = 94/163 (57%)
 Frame = +1

Query: 22  PHSDALVVRVKIGANNIHRVLVDNGSSVNVLAYEVYQKMGLLDKDLSPTSGHLYGFAGAS 201
           PH DALV+R+ +G   +  ++VD GSSV+VL Y+ +++ G LD  L      L GFAG +
Sbjct: 60  PHDDALVIRIDVGNYELSCIMVDTGSSVDVLFYDAFKRTGHLDSKLQGRKTPLTGFAGDT 119

Query: 202 VSVKGLVRLPITLGEAPCMTSQVADFMVVDHPSAYNAIVGRPILKEMRVVTSIYHLSMKF 381
               G ++LP T+        Q+ +F+VVD  + +NAI+GRP L  M+ V S YH  +KF
Sbjct: 120 TFSIGTIQLP-TIARG---VRQLTNFLVVDKKAPFNAILGRPWLHVMKAVPSTYHQCIKF 175

Query: 382 PTPNGIGCVKGTQYESRDCYNKALRSAQKGSTSAPEDVVMEEE 510
           P+  GI  V G+Q  SR CY  +    +K     P  +++E+E
Sbjct: 176 PSYKGIAVVYGSQRSSRKCYMGSYEDIKKAD---PVVLMIEDE 215


>gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 764

 Score =  106 bits (265), Expect = 2e-21
 Identities = 55/138 (39%), Positives = 83/138 (60%)
 Frame = +1

Query: 22  PHSDALVVRVKIGANNIHRVLVDNGSSVNVLAYEVYQKMGLLDKDLSPTSGHLYGFAGAS 201
           PH+D LV+ + IG + + R+L+D GSSVNV+  +V QKM + D+ + P+   L GF G +
Sbjct: 343 PHNDPLVIELHIGESEVTRILIDTGSSVNVVFKDVLQKMKVHDRHIKPSVRPLTGFDGNT 402

Query: 202 VSVKGLVRLPITLGEAPCMTSQVADFMVVDHPSAYNAIVGRPILKEMRVVTSIYHLSMKF 381
           +   G ++LPI LG A         F+VVD P+ YN I+G P + +M+ + S YH  +K 
Sbjct: 403 MMTNGTIKLPIYLGGAATWHK----FVVVDKPTIYNIILGTPWIHDMQAIPSSYHQCIKI 458

Query: 382 PTPNGIGCVKGTQYESRD 435
           PT  GI  ++G Q  + D
Sbjct: 459 PTSIGIETIRGNQNLAHD 476


>gb|ABW81018.1| gag-pol polymerase [Arabidopsis lyrata subsp. lyrata]
          Length = 672

 Score =  105 bits (261), Expect = 7e-21
 Identities = 51/147 (34%), Positives = 82/147 (55%)
 Frame = +1

Query: 1   DAKWVHHPHSDALVVRVKIGANNIHRVLVDNGSSVNVLAYEVYQKMGLLDKDLSPTSGHL 180
           + + +  PH DALV+ + +    + R+L+D GSSV+++     +KMG+   D+      L
Sbjct: 521 ETRHLERPHDDALVITLDVANFEVSRILIDTGSSVDLIFLSTLEKMGISRGDIVGPPSPL 580

Query: 181 YGFAGASVSVKGLVRLPITLGEAPCMTSQVADFMVVDHPSAYNAIVGRPILKEMRVVTSI 360
             F   S    G ++LP+   +     S++ DF+V D P+AYN I+G P +  M+ V S 
Sbjct: 581 VAFTSESAMSLGTIKLPVLAKKV----SKIVDFVVFDKPAAYNIILGTPWIYRMKAVPST 636

Query: 361 YHLSMKFPTPNGIGCVKGTQYESRDCY 441
           Y+  +KFPT NG+  ++G Q  SR CY
Sbjct: 637 YYQCIKFPTSNGVETIRGDQEASRTCY 663


>dbj|BAK61840.1| gag-pol polyprotein [Citrus unshiu]
          Length = 1542

 Score =  103 bits (257), Expect = 2e-20
 Identities = 54/152 (35%), Positives = 85/152 (55%)
 Frame = +1

Query: 1   DAKWVHHPHSDALVVRVKIGANNIHRVLVDNGSSVNVLAYEVYQKMGLLDKDLSPTSGHL 180
           D + + + H DALV++  + A  + R+LVD GSSV++L       MG+ D  L  T+  L
Sbjct: 540 DEEGILYLHEDALVIKAMVAAIELRRILVDTGSSVDILFKSALDDMGISDLKLERTNTSL 599

Query: 181 YGFAGASVSVKGLVRLPITLGEAPCMTSQVADFMVVDHPSAYNAIVGRPILKEMRVVTSI 360
            GF G  ++  G+  LPIT+G  P     +  F+VV+  S Y  I+GRP ++  + V S 
Sbjct: 600 KGFGGGRLTPMGINELPITVGSKPFERIVMLYFVVVEERSPYQMILGRPFIRISQCVIST 659

Query: 361 YHLSMKFPTPNGIGCVKGTQYESRDCYNKALR 456
           ++L++K+     +G VKG Q  +R CY  A +
Sbjct: 660 HYLALKYRVNGVVGVVKGVQKMTRSCYATAAK 691