BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00033438
         (1278 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002310063.1| predicted protein [Populus trichocarpa] gi|2...   456   e-126
ref|XP_002306375.1| predicted protein [Populus trichocarpa] gi|2...   444   e-122
ref|XP_002530980.1| conserved hypothetical protein [Ricinus comm...   417   e-114
ref|XP_001767294.1| RNA helicase [Physcomitrella patens subsp. p...   184   4e-44
gb|AAK40099.1|AF339908_1 RNA helicase SDE3 [Arabidopsis thaliana]     180   6e-43

>ref|XP_002310063.1| predicted protein [Populus trichocarpa] gi|222852966|gb|EEE90513.1|
            predicted protein [Populus trichocarpa]
          Length = 687

 Score =  456 bits (1174), Expect = e-126
 Identities = 245/418 (58%), Positives = 292/418 (69%), Gaps = 4/418 (0%)
 Frame = +1

Query: 1    PGVLKKPLSPQTYKDYFAALLYAEDYYLEKWEGFEMKNVTLNLQEAEI-RGRXXXXXXXX 177
            PGVL KPLS  TYKDYFAALLYAED+Y+EKW  F+++N+TL LQ AEI +          
Sbjct: 260  PGVLNKPLSLSTYKDYFAALLYAEDFYIEKWSEFKLENITLKLQRAEIIKKSRRNEYRNE 319

Query: 178  XXXXXXXIFVEFEVDSIPEKRPFLLSRDFASVRPAGRNVDPFQGIIFRVVRSNIVLVEFG 357
                   IFVEFE+DS  E+RPFLLSRDFA  RP+G+  +P QGII+RV RS  V+VEFG
Sbjct: 320  TYEKDDKIFVEFEIDSCCERRPFLLSRDFAFARPSGQMTEPCQGIIYRVERSTRVVVEFG 379

Query: 358  DDFHAQHYSSCKYDVKFSFNRVCLKRAHQAIAAASDMLFTKFLFPEYRPNDSYFSKKVSF 537
             DF  QH+S+ KYDV FSFNRVCLKRAH AI AASD LF  FLFP     D    K    
Sbjct: 380  KDFLLQHHSTRKYDVSFSFNRVCLKRAHHAIEAASDPLFKSFLFP-----DGVSKKIFPI 434

Query: 538  TEKVLFSSHKLD---STAISRIINLNGSPAYLVEGPLSVTRDKKLSRTGIVLRDAVVQLS 708
            +  + F +HKLD   S+A+  I++  G P Y+VEGPL + +  +LSRTG+V+++AV+Q+ 
Sbjct: 435  STPLHFCNHKLDVYQSSAVREILSFQGPPPYIVEGPLCLNKFSELSRTGLVIQEAVLQIY 494

Query: 709  QASSHNRILICAPTNSTCDVFMRNLWKEVGGSNIFRANAAFRELDGVPIDILPFCPYREK 888
            Q+SS  RILICAP N TCD+ M++L  ++  S++FRANAAFRE+DGVPIDILP C Y  K
Sbjct: 495  QSSSKLRILICAPINRTCDLLMQSLNNDIPKSDMFRANAAFREIDGVPIDILPSCAY--K 552

Query: 889  DEVFSCPSLSELRKFKVILSTFMSSFRLHNEGIERGHFTHIILVDASSAIEPEIXXXXXX 1068
             E F+CPSL ELRKF+VILSTF+SSFRL NEGI  GHF+HI LVDASSA EPE       
Sbjct: 553  GECFTCPSLQELRKFRVILSTFVSSFRLRNEGIAAGHFSHIFLVDASSATEPEAMVPLAN 612

Query: 1069 XXXXXXXXXXXGAPRNQSSWVRSNIARKNGLRTSYFERLRDRKLYRDLNPESITQLED 1242
                       GAP N S WVRSNIARKNGL TSYFERLR  K YR L P+ ITQL D
Sbjct: 613  LASEETAVIVTGAPGNHSGWVRSNIARKNGLMTSYFERLRHSKPYRSLLPKFITQLAD 670


>ref|XP_002306375.1| predicted protein [Populus trichocarpa] gi|222855824|gb|EEE93371.1|
            predicted protein [Populus trichocarpa]
          Length = 773

 Score =  444 bits (1143), Expect = e-122
 Identities = 238/419 (56%), Positives = 295/419 (70%), Gaps = 5/419 (1%)
 Frame = +1

Query: 1    PGVLKKPLSPQTYKDYFAALLYAEDYYLEKWEGFEMKNVTLNLQEAEI-RGRXXXXXXXX 177
            P VL + LSP TYKDYFAALLYAED+Y+EKW  F++KN+ L L++A I + R        
Sbjct: 342  PEVLNEMLSPSTYKDYFAALLYAEDFYIEKWSKFKLKNIALKLKDAAIIKKRGRNEYFGE 401

Query: 178  XXXXXXXIFVEFEVDSIPEKRPFLLSRDFASVRPAGRNVDPFQGIIFRVVRSNIVLVEFG 357
                    FVEFE+DS  EKRPFLLSRDFA  RP+G+  +P+QG+I+RVVRS IVLVEFG
Sbjct: 402  SHEKDNKTFVEFEIDSCREKRPFLLSRDFAFARPSGQKTEPYQGVIYRVVRSTIVLVEFG 461

Query: 358  DDFHAQHYSSCKYDVKFSFNRVCLKRAHQAIAAASDMLFTKFLFPEYRPNDSYFSKKVSF 537
            +DF  QH+S+ +YDV FSFNRVCLKRAHQAI AASD  F  FLFP +        K +  
Sbjct: 462  EDFLLQHHSTREYDVSFSFNRVCLKRAHQAIEAASDPSFKNFLFPNF-----VHRKSIPT 516

Query: 538  TEKVLFSSHKLDS---TAISRIINLNGSPAYLVEGPL-SVTRDKKLSRTGIVLRDAVVQL 705
            +  + F +HKLD+   +A+  I++  G P YLVEGPL S    K+LSR G+V+++AV+Q+
Sbjct: 517  STPLHFINHKLDAYQRSAVHEILSFRGPPPYLVEGPLCSKEYSKQLSRIGLVVQEAVLQI 576

Query: 706  SQASSHNRILICAPTNSTCDVFMRNLWKEVGGSNIFRANAAFRELDGVPIDILPFCPYRE 885
             Q+SS +RILICAP N TCDV M++L  ++  S++FRANAAFRE+DGVPIDIL  C Y  
Sbjct: 577  YQSSSKHRILICAPINRTCDVLMQSLKIDIPESDMFRANAAFREIDGVPIDILTSCVY-- 634

Query: 886  KDEVFSCPSLSELRKFKVILSTFMSSFRLHNEGIERGHFTHIILVDASSAIEPEIXXXXX 1065
            K + F+CPS+ ELRKF+VILSTF+SSFRLHNEGI  GHF+HI LV+ASSA EPE      
Sbjct: 635  KRDCFTCPSIRELRKFRVILSTFVSSFRLHNEGIVAGHFSHIFLVNASSATEPEAMVALA 694

Query: 1066 XXXXXXXXXXXXGAPRNQSSWVRSNIARKNGLRTSYFERLRDRKLYRDLNPESITQLED 1242
                        GAP N S WVRSNIAR+NGL TSYFERLRD K Y + +P+ I QL D
Sbjct: 695  NLASENTAVIVTGAPGNHSGWVRSNIARENGLMTSYFERLRDSKPYWNSHPKFIMQLVD 753


>ref|XP_002530980.1| conserved hypothetical protein [Ricinus communis]
            gi|223529456|gb|EEF31415.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 710

 Score =  417 bits (1072), Expect = e-114
 Identities = 231/427 (54%), Positives = 282/427 (66%), Gaps = 12/427 (2%)
 Frame = +1

Query: 1    PGVLKKPLSPQTYKDYFAALLYAEDYYLEKWEGFEMKNVTLNLQEAEIRGRXXXXXXXXX 180
            P VLKKPLS  TYKDYFAALLYAEDYY+EKW  F++  +T+ LQE  I  +         
Sbjct: 291  PEVLKKPLSLSTYKDYFAALLYAEDYYIEKWSKFKLVGITIKLQETAISKQIYFGKDYET 350

Query: 181  XXXXXXIFVEFEVDSIPEKRPFLLSRDFASVRPAGRNVDPFQGIIFRVVRSNIVLVEFGD 360
                    V FE+DS  EKRPFLLSRDF   RP+G   +PFQGII+RV RS  VLVEFG+
Sbjct: 351  DVKH---LVAFEIDSSHEKRPFLLSRDFVFARPSGSTTEPFQGIIYRVQRSTTVLVEFGE 407

Query: 361  DFHAQHYSSCKYDVKFSFNRVCLKRAHQAIAAASDMLFTKFLFPEYRPNDSYFSKKVSFT 540
            DFHAQH S  KYDV FSFNRVCL+RAHQAI AASD  F  F+FP      S+  +++S +
Sbjct: 408  DFHAQHCSFQKYDVSFSFNRVCLRRAHQAIEAASDPSFENFIFP------SWGLRRLSSS 461

Query: 541  EKVLFSSHKLD---STAISRIINLNGSPAYLVEGPLSVTR---------DKKLSRTGIVL 684
               L   +KLD   + A+ RII +  SP YL+EGP  V +          K+LS TG+++
Sbjct: 462  SPNLNYINKLDANLNAAVHRIITIMESPPYLLEGPPCVAKVEVKRKECNSKQLSSTGLII 521

Query: 685  RDAVVQLSQASSHNRILICAPTNSTCDVFMRNLWKEVGGSNIFRANAAFRELDGVPIDIL 864
            + AV ++ ++S   RILICAP N TCDV MR+L KE+  S +FRANAAFRE+DGVP DIL
Sbjct: 522  QQAVFRIYRSSQKYRILICAPINRTCDVLMRSL-KEIPESEMFRANAAFREIDGVPTDIL 580

Query: 865  PFCPYREKDEVFSCPSLSELRKFKVILSTFMSSFRLHNEGIERGHFTHIILVDASSAIEP 1044
                Y  K + F+CP L ELRKFK+ILST++SSF+LHNEGI  GHF+HI +VDASSA EP
Sbjct: 581  ASSLY--KGDCFACPKLQELRKFKIILSTYVSSFQLHNEGIAAGHFSHIFMVDASSATEP 638

Query: 1045 EIXXXXXXXXXXXXXXXXXGAPRNQSSWVRSNIARKNGLRTSYFERLRDRKLYRDLNPES 1224
            E                  GAPRN S WVRS++ARKNGL  SYFERL +R  Y++L+P  
Sbjct: 639  EAMVALANFANEKTTVIVTGAPRNHSGWVRSDLARKNGLMKSYFERLCERTPYKNLDPNF 698

Query: 1225 ITQLEDD 1245
            I QL DD
Sbjct: 699  IMQLVDD 705


>ref|XP_001767294.1| RNA helicase [Physcomitrella patens subsp. patens]
            gi|162681549|gb|EDQ67975.1| RNA helicase [Physcomitrella
            patens subsp. patens]
          Length = 885

 Score =  184 bits (467), Expect = 4e-44
 Identities = 123/401 (30%), Positives = 199/401 (49%), Gaps = 2/401 (0%)
 Frame = +1

Query: 7    VLKKPLSPQTYKDYFAALLYAEDYYLE-KWEGFEMKNVTLNLQEAEIRGRXXXXXXXXXX 183
            V  + L  + Y +YF+ L++AE+  +E     ++M+NVT+      + G           
Sbjct: 242  VFSEGLRKENYFEYFSTLMFAEELQMEVDIRAYDMQNVTMWKVSHTLLG----------- 290

Query: 184  XXXXXIFVEFEVDSIPEKRPFLLSRDFASVRPAGRNVDPFQGIIFRVVRSNIVLVEFGDD 363
                       V  + EKRP ++ RD    RP+G     FQG + +V ++N V + FGD 
Sbjct: 291  ---------LRVPGLAEKRPSVIYRDKIYARPSGTTATEFQGYVHKV-QANEVHLRFGDA 340

Query: 364  FHAQHYSSCKYDVKFSFNRVCLKRAHQAIAAASDMLFTKFLFP-EYRPNDSYFSKKVSFT 540
            F+    S+ +YD++FSF RV ++RAHQ I AA  +L   FLFP    P+ +  SKK++  
Sbjct: 341  FNKGFISNSRYDIRFSFGRVNIRRAHQGIQAAKALL-DSFLFPTTVVPSRTESSKKLTPF 399

Query: 541  EKVLFSSHKLDSTAISRIINLNGSPAYLVEGPLSVTRDKKLSRTGIVLRDAVVQLSQASS 720
             +   +++    +A+  I+   GSP YL+ GP    +        + + +A++Q+ +A  
Sbjct: 400  NR---AANAEQMSAVQEILKKRGSPPYLIYGPPGTGKT-------VTVVEAMLQVKRAHP 449

Query: 721  HNRILICAPTNSTCDVFMRNLWKEVGGSNIFRANAAFRELDGVPIDILPFCPYREKDEVF 900
            + RIL CAP+N   D+ +  L   V   ++ R NA  R +D VP  I+PFC    +++ F
Sbjct: 450  NARILACAPSNLASDLLLERLIGSVEKRDMLRLNAYTRPVDDVPSHIIPFCSI--ENDFF 507

Query: 901  SCPSLSELRKFKVILSTFMSSFRLHNEGIERGHFTHIILVDASSAIEPEIXXXXXXXXXX 1080
              P L+ L K++++++T+ S+  L  + +  GHFTHI L +A    EPE           
Sbjct: 508  CTPGLASLEKYRIVVTTYWSAAMLDAQEVHPGHFTHIFLDEAGQGTEPETMVSIGNLANK 567

Query: 1081 XXXXXXXGAPRNQSSWVRSNIARKNGLRTSYFERLRDRKLY 1203
                   G  +     +RS +A K GL  SY ERL     Y
Sbjct: 568  NTVVVLAGDHQQLGPLIRSPVALKYGLDKSYLERLSSLTSY 608


>gb|AAK40099.1|AF339908_1 RNA helicase SDE3 [Arabidopsis thaliana]
          Length = 1002

 Score =  180 bits (457), Expect = 6e-43
 Identities = 124/419 (29%), Positives = 202/419 (48%), Gaps = 7/419 (1%)
 Frame = +1

Query: 1    PGVLKKPLSPQTYKDYFAALLYAEDYYLEK-WEGFEMKNVTLNLQEAEIRGRXXXXXXXX 177
            P  L + L+ + Y +Y+  LL  E+  LE+    ++M+NV++  +               
Sbjct: 233  PDDLNEGLTARNYANYYKTLLIMEELQLEEDMRAYDMENVSMKRR--------------- 277

Query: 178  XXXXXXXIFVEFEVDSIPEKRPFLLSRDFASVRPA--GRNVDPFQGIIFRVVRSNIVLVE 351
                   I++  EV  + E+RP L+  DF  VR A        +QG + RV    + L +
Sbjct: 278  ------GIYLSLEVPGLAERRPSLVHGDFIFVRHAYDDGTDHAYQGFVHRVEADEVHL-K 330

Query: 352  FGDDFHAQHYSSCKYDVKFSFNRVCLKRAHQAIAAASDMLFTKFLFPEYRPNDSYFSKKV 531
            F  +FH +H +   Y+V+F++NR+  +R +QA+ AA +ML   FLFP           K 
Sbjct: 331  FASEFHQRHTAGSVYNVRFTYNRINTRRLYQAVDAA-EMLDPNFLFPSLHSGKRMIKTKP 389

Query: 532  SFTEKVLFSSHKLDSTAISRIINLNGSPAYLVEGPLSVTRDKKLSRTGIVLRDAVVQLSQ 711
                    ++ ++ S  I  ++   G+P Y++ GP    +        + L +A+VQL  
Sbjct: 390  FVPISPALNAEQICS--IEMVLGCKGAPPYVIHGPPGTGKT-------MTLVEAIVQLYT 440

Query: 712  ASSHNRILICAPTNSTCDVFMRNLW----KEVGGSNIFRANAAFRELDGVPIDILPFCPY 879
               + R+L+CAP+NS  D  +  L       +  + IFR NAA R  + +  +I+ FC +
Sbjct: 441  TQRNARVLVCAPSNSAADHILEKLLCLEGVRIKDNEIFRLNAATRSYEEIKPEIIRFCFF 500

Query: 880  REKDEVFSCPSLSELRKFKVILSTFMSSFRLHNEGIERGHFTHIILVDASSAIEPEIXXX 1059
             E   +F CP L  L ++K+++ST+MS+  L+ EG++RGHFTHI+L +A  A EPE    
Sbjct: 501  DEL--IFKCPPLKALTRYKLVVSTYMSASLLNAEGVKRGHFTHILLDEAGQASEPENMIA 558

Query: 1060 XXXXXXXXXXXXXXGAPRNQSSWVRSNIARKNGLRTSYFERLRDRKLYRDLNPESITQL 1236
                          G PR     + S  A   GL  SY ERL +   Y + +   +T+L
Sbjct: 559  VSNLCLTETVVVLAGDPRQLGPVIYSRDAESLGLGKSYLERLFECDYYCEGDENYVTKL 617