BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00033086
         (335 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD24647.1| putative retroelement pol polyprotein [Arabidopsi...   105   5e-21
gb|AAG51046.1|AC069473_8 gypsy/Ty-3 retroelement polyprotein; 69...   102   3e-20
gb|AAG51464.1|AC069160_10 gypsy/Ty3 element polyprotein, putativ...    99   4e-19
gb|ACB28472.1| polyprotein [Ananas comosus]                            88   6e-16
gb|ABW74571.1| pol polyprotein [Boechera divaricarpa]                  85   7e-15

>gb|AAD24647.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 780

 Score =  105 bits (261), Expect = 5e-21
 Identities = 54/112 (48%), Positives = 74/112 (66%), Gaps = 1/112 (0%)
 Frame = -1

Query: 335 STPFQQFWLSKLMGFDYEIIYKNGADNLVADALSRVEGSEVLCMAISVISSDLTQQIQQS 156
           +TP QQ WL KL+ FDYEI YK G +NLVADALSRVEGSEVL MA+SV+  DL ++IQ  
Sbjct: 367 NTPIQQQWLPKLLEFDYEIQYKQGKENLVADALSRVEGSEVLHMALSVVECDLLKEIQAG 426

Query: 155 YTLDSQLTNILSQINQQI-QVEGFVCIDGLLRKHHKIVVGPDDNLKAKLINW 3
           Y  D  +  I++ + QQ    + +    G+LR+ +KIVV  +  +K  ++ W
Sbjct: 427 YVTDGDIQGIITILQQQADSKKHYTWSQGVLRRKNKIVVPNNSGIKDTILRW 478


>gb|AAG51046.1|AC069473_8 gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis
            thaliana] gi|10998138|dbj|BAB03109.1| retroelement pol
            polyprotein [Arabidopsis thaliana]
          Length = 1499

 Score =  102 bits (254), Expect = 3e-20
 Identities = 54/112 (48%), Positives = 75/112 (66%), Gaps = 1/112 (0%)
 Frame = -1

Query: 335  STPFQQFWLSKLMGFDYEIIYKNGADNLVADALSRVEGSEVLCMAISVISSDLTQQIQQS 156
            +TP QQ WL KL+ FDYEI Y+ G +N+VADALSRVEGSEVL MA++V+  DL + IQ  
Sbjct: 976  NTPIQQQWLPKLLEFDYEIQYRQGKENVVADALSRVEGSEVLHMAMTVVECDLLKDIQAG 1035

Query: 155  YTLDSQLTNILSQINQQIQVEG-FVCIDGLLRKHHKIVVGPDDNLKAKLINW 3
            Y  DSQL +I++ + +    +  F     +LR+  KIVV  +DN+K  ++ W
Sbjct: 1036 YANDSQLQDIITALQRDPDSKKYFSWSQNILRRKSKIVVPANDNIKNTILLW 1087


>gb|AAG51464.1|AC069160_10 gypsy/Ty3 element polyprotein, putative [Arabidopsis thaliana]
          Length = 1447

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 53/112 (47%), Positives = 72/112 (64%), Gaps = 1/112 (0%)
 Frame = -1

Query: 335  STPFQQFWLSKLMGFDYEIIYKNGADNLVADALSRVEGSEVLCMAISVISSDLTQQIQQS 156
            +TP QQ WL KL+ FDYEI Y+ G +NLVADALSRVEGSEVL MA+S++  D  ++IQ +
Sbjct: 947  NTPVQQQWLPKLLEFDYEIQYRQGKENLVADALSRVEGSEVLHMALSIVECDFLKEIQVA 1006

Query: 155  YTLDSQLTNILSQINQQIQV-EGFVCIDGLLRKHHKIVVGPDDNLKAKLINW 3
            Y  D  L +I+S + Q     + +     +LR+  KIVV  D  +  KL+ W
Sbjct: 1007 YESDGVLKDIISALQQHPDAKKHYSWSQDILRRKSKIVVPNDVEITNKLLQW 1058


>gb|ACB28472.1| polyprotein [Ananas comosus]
          Length = 953

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 49/111 (44%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
 Frame = -1

Query: 335 STPFQQFWLSKLMGFDYEIIYKNGADNLVADALSRVEGSEVLCMAISVISSDLTQQIQQS 156
           STP QQ W++KLMG+DYE+IYK G +N+VADALSR        +A+S I +DL  QI+ S
Sbjct: 604 STPSQQKWVAKLMGYDYELIYKKGQENVVADALSR----SPTLLAVSAIHTDLLDQIKWS 659

Query: 155 YTLDSQLTNILSQINQQIQV-EGFVCIDGLLRKHHKIVVGPDDNLKAKLIN 6
           + +D +L  I+ Q    I     +  +   LR+  K+VVG D  LK +LI+
Sbjct: 660 WNVDDKLKKIIQQKQSDINSWPRYTWVQDQLRRKGKLVVGSDPGLKLQLIH 710


>gb|ABW74571.1| pol polyprotein [Boechera divaricarpa]
          Length = 450

 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 38/112 (33%), Positives = 75/112 (66%), Gaps = 1/112 (0%)
 Frame = -1

Query: 335 STPFQQFWLSKLMGFDYEIIYKNGADNLVADALSRVEGSEVLCMAISVISSDLTQQIQQS 156
           +TP QQ  L +L+ FDYEI Y+ G +N+  DALSRV+G++VL MA+S++  DL   IQ++
Sbjct: 329 NTPVQQKMLPRLLEFDYEIQYRQGKENVAVDALSRVDGAKVLHMAMSMLECDLILNIQKA 388

Query: 155 YTLDSQLTNILSQINQ-QIQVEGFVCIDGLLRKHHKIVVGPDDNLKAKLINW 3
           Y  D+++  I+ ++ +  + ++ +  +  +LR+  K+V+  ++ ++ +++ W
Sbjct: 389 YETDAEVMAIIEKLKKDSVFIKNYSWMQDILRRKSKLVIPKNEEVRVEILKW 440