BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00032764
         (681 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABW81018.1| gag-pol polymerase [Arabidopsis lyrata subsp. lyr...   104   1e-20
gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subc...    95   1e-17
gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subc...    94   2e-17
gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]                90   5e-16
gb|AAD27571.1|AF114171_12 polyprotein [Sorghum bicolor] gi|43780...    89   1e-15

>gb|ABW81018.1| gag-pol polymerase [Arabidopsis lyrata subsp. lyrata]
          Length = 672

 Score =  104 bits (260), Expect = 1e-20
 Identities = 71/225 (31%), Positives = 121/225 (53%), Gaps = 2/225 (0%)
 Frame = -3

Query: 673  SGHNTHDCRQLKEEIEALIREGYLTEWVKKYRTDHPVERKGLGRGQVEDGKDKLEDSKFV 494
            +GH T DC  LK+ +  L   G L+++  K       E K   + Q +  + +L + +  
Sbjct: 409  TGHLTKDCSILKKHLAELWASGDLSKFDIKDFVKEYHEAKENSKDQ-DSKRPRLSNEEEP 467

Query: 493  R--EGSIRTIVGGPHLAGDSNKAMERYAREAKTRPLTNVNHLDDRPPRLFKGETADITFS 320
            R  +G I  I+GG    GDS  +++++ R    +   +   +D      F+G  A I+F+
Sbjct: 468  RSSKGRINVILGGSRFCGDSISSIKKHRRNVLLKASLS-EEID------FQG--ASISFN 518

Query: 319  EEDAKWVHHPHNDALVVTIGIGTQNVHRVFVDNGSSVNILY*STYQKMGLSDRDLKVENI 140
            EE+ + +  PH+DALV+T+ +    V R+ +D GSSV++++ ST +KMG+S  D+     
Sbjct: 519  EEETRHLERPHDDALVITLDVANFEVSRILIDTGSSVDLIFLSTLEKMGISRGDIVGPPS 578

Query: 139  YIYGFGGESIRVKGTIRLPVTLGDGAKSATQIVDFMAVDQESSHN 5
             +  F  ES    GTI+LPV     AK  ++IVDF+  D+ +++N
Sbjct: 579  PLVAFTSESAMSLGTIKLPVL----AKKVSKIVDFVVFDKPAAYN 619


>gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1889

 Score = 94.7 bits (234), Expect = 1e-17
 Identities = 67/228 (29%), Positives = 105/228 (46%), Gaps = 5/228 (2%)
 Frame = -3

Query: 670  GHNTHDCRQLKEEIEALIREGYLTEWVKKYRTDHPVERKGLGRGQVEDGKD-KLEDSKFV 494
            GH+T +CRQ+   +E         + V +Y   +   R   G+  +E  +  K+E  + V
Sbjct: 639  GHSTEECRQMTHLLE---------KHVNRYEDKYEGARDQRGQNAIEAPQVMKIEAIEEV 689

Query: 493  REGSIRTIVGGPHLAGDSNKAMERYAREAKTRPLTNVNHL----DDRPPRLFKGETADIT 326
             +  I  I GG  L  +S +  + Y R+        VNH+       PP   K     I+
Sbjct: 690  PKRVINAITGGSSLGVESKRQRKAYVRQ--------VNHVGTSYQSNPPVYSK---TVIS 738

Query: 325  FSEEDAKWVHHPHNDALVVTIGIGTQNVHRVFVDNGSSVNILY*STYQKMGLSDRDLKVE 146
            F  EDA+ +  PH D LVV++ I    V RV +D GSS ++L+   ++KM + +  L   
Sbjct: 739  FGPEDAEGILFPHQDPLVVSVEIAQCEVQRVLIDGGSSADVLFYDAFKKMQIPEDRLTNA 798

Query: 145  NIYIYGFGGESIRVKGTIRLPVTLGDGAKSATQIVDFMAVDQESSHNA 2
             + + GFGG+ +   G I L V  G G     + + F  VD    +NA
Sbjct: 799  GVPLQGFGGQQVHAIGKISLQVVFGKGTNVRKEEIVFDVVDMPYQYNA 846


>gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1980

 Score = 94.4 bits (233), Expect = 2e-17
 Identities = 66/228 (28%), Positives = 106/228 (46%), Gaps = 5/228 (2%)
 Frame = -3

Query: 670  GHNTHDCRQLKEEIEALIREGYLTEWVKKYRTDHPVERKGLGRGQVEDGKD-KLEDSKFV 494
            GH+T +CRQ+   +E         + V +Y   +   R   G+  ++  +  K+E  + V
Sbjct: 639  GHSTEECRQMTHLLE---------KHVNRYENKYEGARDQRGQNAIKAPQVMKIEAIEEV 689

Query: 493  REGSIRTIVGGPHLAGDSNKAMERYAREAKTRPLTNVNHL----DDRPPRLFKGETADIT 326
             +  I  I GG  L  +S +  + Y R+        VNH+      +PP   K     I+
Sbjct: 690  PKRVINAITGGSSLGVESKRQRKAYVRQ--------VNHVGTIYQSKPPVYSK---TVIS 738

Query: 325  FSEEDAKWVHHPHNDALVVTIGIGTQNVHRVFVDNGSSVNILY*STYQKMGLSDRDLKVE 146
            F  EDA+ +  PH D LVV++ I    V RV +D GSS ++L+   ++KM + +  L   
Sbjct: 739  FGPEDAEGILFPHQDPLVVSVEIAQCEVQRVLIDGGSSADVLFYDAFKKMQIPEDRLTNA 798

Query: 145  NIYIYGFGGESIRVKGTIRLPVTLGDGAKSATQIVDFMAVDQESSHNA 2
             + + GFGG+ +   G I L V  G G     + + F  VD    +NA
Sbjct: 799  GVPLQGFGGQQVHAIGKISLQVVFGKGTNVRKEEIVFDVVDMPYQYNA 846


>gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]
          Length = 1859

 Score = 89.7 bits (221), Expect = 5e-16
 Identities = 73/269 (27%), Positives = 118/269 (43%), Gaps = 47/269 (17%)
 Frame = -3

Query: 670  GHNTHDCRQLKEEIEALIREGYLTEWVKKYRT-------DH-PVERKGLGRGQVEDG--- 524
            GH T  C+ LK++IE L++ G+L ++VK   T       DH P ER G    +  D    
Sbjct: 471  GHTTEGCQALKDKIEELVQAGHLRKFVKTTITAPRSPQRDHDPRERSGRRDDRTRDNHYR 530

Query: 523  ----------------KDKLEDSKFVREGSIRTIV--------------------GGPHL 452
                            K +  + +   +  +RT++                    GG   
Sbjct: 531  SSRRKRSESPIRRTRPKSESPERRSRTKQKVRTVINTIAGPVSLGQPPQEINYIAGGFAG 590

Query: 451  AGDSNKAMERYAREAKTRPLTNVNHLDDRPPRLFKGETADITFSEEDAKWVHHPHNDALV 272
             G SN A +++ R  ++   T        PP         ITF++ED   +    +D +V
Sbjct: 591  GGCSNSARKKHLRAIQSVHSTPTQRRPHIPP---------ITFTDEDFTAIDPSQDDPMV 641

Query: 271  VTIGIGTQNVHRVFVDNGSSVNILY*STYQKMGLSDRDLKVENIYIYGFGGESIRVKGTI 92
            +T+ I    + +V VD GSSV+ILY  T++KM + + +++  N  I GF  E +  KG I
Sbjct: 642  ITVEIDKFAIAKVLVDQGSSVDILYWETFKKMKIPEAEIQPYNEQIVGFSRERVDTKGFI 701

Query: 91   RLPVTLGDGAKSATQIVDFMAVDQESSHN 5
             L  T GD   S T  + ++ V+  +S+N
Sbjct: 702  DLYTTFGDDYLSKTINIRYLLVNANTSYN 730


>gb|AAD27571.1|AF114171_12 polyprotein [Sorghum bicolor] gi|4378066|gb|AAD19359.1| polyprotein
            [Sorghum bicolor]
          Length = 1877

 Score = 88.6 bits (218), Expect = 1e-15
 Identities = 56/163 (34%), Positives = 82/163 (50%), Gaps = 1/163 (0%)
 Frame = -3

Query: 487  GSIRTIVGGPHLAGDSNKAMERYAREAKTRPLTNVNHLDDRPP-RLFKGETADITFSEED 311
            G I  I GG         +ME   ++ K   L  VN++  + P R        ITF+EED
Sbjct: 575  GMILPIAGG--------SSMEFQTKKQKKDHLRLVNNVAVQGPVRCTDWSRTPITFTEED 626

Query: 310  AKWVHHPHNDALVVTIGIGTQNVHRVFVDNGSSVNILY*STYQKMGLSDRDLKVENIYIY 131
             +   +PH DALV+T  +    V R+ VD+GSS +I++  T+ +M LS   L+     + 
Sbjct: 627  LRLESYPHTDALVITTNVAGWGVSRILVDSGSSADIIFAGTFDQMKLSRSQLQPSESPLI 686

Query: 130  GFGGESIRVKGTIRLPVTLGDGAKSATQIVDFMAVDQESSHNA 2
            GFGG+ I   G + LPV+ G    + T+ V F  VD    +NA
Sbjct: 687  GFGGKQIHALGKVALPVSFGTTENARTEYVTFDVVDLHYPYNA 729