BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00032734
         (438 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF79254.1|AC023279_3 F12K21.6 [Arabidopsis thaliana]               90   2e-16
gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]              87   1e-15
gb|AAF03460.1|AC009992_2 putative reverse transcriptase, 5' part...    83   3e-14
gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]              82   3e-14
gb|AAD03367.1| putative retroelement pol polyprotein [Arabidopsi...    81   1e-13

>gb|AAF79254.1|AC023279_3 F12K21.6 [Arabidopsis thaliana]
          Length = 755

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 40/77 (51%), Positives = 48/77 (62%)
 Frame = +2

Query: 11  ARHYNGKVIARPLHVGDLVLRRVMPNTKVPGHGVFGANWEGPYKIKSVLWEGTYHLTDMN 190
           ARHYN  V  R  H GD VL++V  NT  P  G  G NWEGPY I  ++    Y L D++
Sbjct: 678 ARHYNSNVRQRRFHEGDRVLQKVFQNTAEPNTGKLGTNWEGPYLISKIVRPEVYELADLS 737

Query: 191 DKLIPRAWNAEHLRKYY 241
            K +PR+WNA HLRKYY
Sbjct: 738 GKAVPRSWNAMHLRKYY 754


>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1103

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 41/80 (51%), Positives = 49/80 (61%)
 Frame = +2

Query: 2    QRTARHYNGKVIARPLHVGDLVLRRVMPNTKVPGHGVFGANWEGPYKIKSVLWEGTYHLT 181
            Q  AR+YN KV +RP  VGD VLRRV  N K  G G  G NWEGPY I  V+  G Y L 
Sbjct: 1023 QAAARYYNSKVKSRPFFVGDYVLRRVFDNKKEEGAGKLGINWEGPYIITEVVRNGVYRLK 1082

Query: 182  DMNDKLIPRAWNAEHLRKYY 241
            D+ D  + R WN  +L+K+Y
Sbjct: 1083 DLEDNPVKRPWNVINLKKFY 1102


>gb|AAF03460.1|AC009992_2 putative reverse transcriptase, 5' partial [Arabidopsis thaliana]
          Length = 177

 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 36/80 (45%), Positives = 50/80 (62%)
 Frame = +2

Query: 2   QRTARHYNGKVIARPLHVGDLVLRRVMPNTKVPGHGVFGANWEGPYKIKSVLWEGTYHLT 181
           Q  AR+YN K+ +RP  +GD VL+RV  N K  G G  G NWEGPY +  V+  G + L 
Sbjct: 97  QAAARYYNSKINSRPFFMGDYVLKRVFDNKKEEGAGKLGINWEGPYIVTEVVRNGVFGLK 156

Query: 182 DMNDKLIPRAWNAEHLRKYY 241
           D+ D+ + R WN  +L+K+Y
Sbjct: 157 DLEDRPVKRPWNMVNLKKFY 176


>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score = 82.4 bits (202), Expect = 3e-14
 Identities = 37/77 (48%), Positives = 48/77 (62%)
 Frame = +2

Query: 11   ARHYNGKVIARPLHVGDLVLRRVMPNTKVPGHGVFGANWEGPYKIKSVLWEGTYHLTDMN 190
            A+HYN KV  R   VGDLVLR+V  NT     G  GANWEG Y++  ++  G Y L  M+
Sbjct: 1761 AKHYNQKVHNRHFDVGDLVLRKVFENTAEINAGKLGANWEGSYQVSKIVRPGDYELLTMS 1820

Query: 191  DKLIPRAWNAEHLRKYY 241
               +PR WN+ HL++YY
Sbjct: 1821 GTAVPRTWNSMHLKRYY 1837


>gb|AAD03367.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1329

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 38/77 (49%), Positives = 47/77 (61%)
 Frame = +2

Query: 11   ARHYNGKVIARPLHVGDLVLRRVMPNTKVPGHGVFGANWEGPYKIKSVLWEGTYHLTDMN 190
            AR+YN  V  R   VG LVLRRV  N    G G  G +WEGPYKI  V+  G Y L +M 
Sbjct: 1252 ARYYNSNVRNRSFEVGTLVLRRVQQNKAEKGAGKLGISWEGPYKITHVVRNGVYRLINME 1311

Query: 191  DKLIPRAWNAEHLRKYY 241
             K + RAWN+ HL+++Y
Sbjct: 1312 GKTVRRAWNSMHLKRFY 1328