BLASTX nr result
ID: Cnidium21_contig00032722
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Cnidium21_contig00032722 (361 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_188871.1| DNA-directed RNA polymerase II subunit E [Arabi... 192 2e-47 ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrat... 192 2e-47 ref|XP_002514265.1| DNA-directed RNA polymerase II, putative [Ri... 190 9e-47 ref|XP_002331171.1| predicted protein [Populus trichocarpa] gi|2... 189 2e-46 emb|CBI28035.3| unnamed protein product [Vitis vinifera] 187 6e-46 >ref|NP_188871.1| DNA-directed RNA polymerase II subunit E [Arabidopsis thaliana] gi|13899113|gb|AAK48978.1|AF370551_1 RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis thaliana] gi|15724322|gb|AAL06554.1|AF412101_1 AT3g22320/MCB17_5 [Arabidopsis thaliana] gi|3372233|gb|AAC28253.1| RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis thaliana] gi|9293866|dbj|BAB01769.1| RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis thaliana] gi|21554280|gb|AAM63355.1| RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis thaliana] gi|25083949|gb|AAN72141.1| RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis thaliana] gi|332643100|gb|AEE76621.1| DNA-directed RNA polymerase II subunit E [Arabidopsis thaliana] Length = 205 Score = 192 bits (489), Expect = 2e-47 Identities = 95/108 (87%), Positives = 104/108 (96%) Frame = +3 Query: 3 ILVVQQNLTPFARSCQAEISSKFQLEVFQEHELLVNIKEHVLVPEHQVLTTEEKKTLLDR 182 ILVVQQNLTPFAR+C +EISSKF LEVFQE E+LVNIKEHVLVPEHQVLTTEEKKTLL+R Sbjct: 98 ILVVQQNLTPFARTCISEISSKFHLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLER 157 Query: 183 YTVRETQLPRIQLTDPVARYYGLTRGQVVKIIRPSETAGRYVTYRFVV 326 YTV+ETQLPRIQ+TDP+ARY+GL RGQVVKIIRPSETAGRYVTYR+VV Sbjct: 158 YTVKETQLPRIQVTDPIARYFGLKRGQVVKIIRPSETAGRYVTYRYVV 205 >ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrata] gi|297331338|gb|EFH61757.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrata] Length = 205 Score = 192 bits (489), Expect = 2e-47 Identities = 95/108 (87%), Positives = 104/108 (96%) Frame = +3 Query: 3 ILVVQQNLTPFARSCQAEISSKFQLEVFQEHELLVNIKEHVLVPEHQVLTTEEKKTLLDR 182 ILVVQQNLTPFAR+C +EISSKF LEVFQE E+LVNIKEHVLVPEHQVLTTEEKKTLL+R Sbjct: 98 ILVVQQNLTPFARTCISEISSKFHLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLER 157 Query: 183 YTVRETQLPRIQLTDPVARYYGLTRGQVVKIIRPSETAGRYVTYRFVV 326 YTV+ETQLPRIQ+TDP+ARY+GL RGQVVKIIRPSETAGRYVTYR+VV Sbjct: 158 YTVKETQLPRIQVTDPIARYFGLKRGQVVKIIRPSETAGRYVTYRYVV 205 >ref|XP_002514265.1| DNA-directed RNA polymerase II, putative [Ricinus communis] gi|223546721|gb|EEF48219.1| DNA-directed RNA polymerase II, putative [Ricinus communis] Length = 225 Score = 190 bits (483), Expect = 9e-47 Identities = 94/108 (87%), Positives = 103/108 (95%) Frame = +3 Query: 3 ILVVQQNLTPFARSCQAEISSKFQLEVFQEHELLVNIKEHVLVPEHQVLTTEEKKTLLDR 182 ILVVQQ+LTPFAR+C AEI+SKF LEVFQE ELLVNIKEHVLVPEHQVLT EEKKTLL+R Sbjct: 118 ILVVQQSLTPFARTCIAEIASKFHLEVFQESELLVNIKEHVLVPEHQVLTNEEKKTLLER 177 Query: 183 YTVRETQLPRIQLTDPVARYYGLTRGQVVKIIRPSETAGRYVTYRFVV 326 YTV+ETQLPRIQ++DP+ARYYGL RGQVVKIIRPSETAGRYVTYR+VV Sbjct: 178 YTVKETQLPRIQISDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 225 >ref|XP_002331171.1| predicted protein [Populus trichocarpa] gi|222873254|gb|EEF10385.1| predicted protein [Populus trichocarpa] Length = 206 Score = 189 bits (480), Expect = 2e-46 Identities = 93/108 (86%), Positives = 102/108 (94%) Frame = +3 Query: 3 ILVVQQNLTPFARSCQAEISSKFQLEVFQEHELLVNIKEHVLVPEHQVLTTEEKKTLLDR 182 ILVVQQNLTPFAR+C EIS+KF LEVFQE ELLVNIKEHVLVPEHQVL+ EEKKTLL+R Sbjct: 99 ILVVQQNLTPFARTCINEISTKFHLEVFQEAELLVNIKEHVLVPEHQVLSNEEKKTLLER 158 Query: 183 YTVRETQLPRIQLTDPVARYYGLTRGQVVKIIRPSETAGRYVTYRFVV 326 YTV+ETQLPRIQ+TDP+ARYYGL RGQVVKIIRPSETAGRYVTYR+V+ Sbjct: 159 YTVKETQLPRIQITDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVI 206 >emb|CBI28035.3| unnamed protein product [Vitis vinifera] Length = 186 Score = 187 bits (476), Expect = 6e-46 Identities = 92/108 (85%), Positives = 103/108 (95%) Frame = +3 Query: 3 ILVVQQNLTPFARSCQAEISSKFQLEVFQEHELLVNIKEHVLVPEHQVLTTEEKKTLLDR 182 ILVVQQNLTPFAR+C EIS+KF LEVFQE ELLVNIKEHVLVPEHQVLT+EEKKTLL+R Sbjct: 79 ILVVQQNLTPFARTCINEISTKFHLEVFQEAELLVNIKEHVLVPEHQVLTSEEKKTLLER 138 Query: 183 YTVRETQLPRIQLTDPVARYYGLTRGQVVKIIRPSETAGRYVTYRFVV 326 YTV+ETQLPRIQ++DP+ARY+GL RGQVVKIIRPSETAGRY+TYR+VV Sbjct: 139 YTVKETQLPRIQVSDPIARYFGLKRGQVVKIIRPSETAGRYITYRYVV 186