BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00032722
         (361 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_188871.1| DNA-directed RNA polymerase II subunit E [Arabi...   192   2e-47
ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrat...   192   2e-47
ref|XP_002514265.1| DNA-directed RNA polymerase II, putative [Ri...   190   9e-47
ref|XP_002331171.1| predicted protein [Populus trichocarpa] gi|2...   189   2e-46
emb|CBI28035.3| unnamed protein product [Vitis vinifera]              187   6e-46

>ref|NP_188871.1| DNA-directed RNA polymerase II subunit E [Arabidopsis thaliana]
           gi|13899113|gb|AAK48978.1|AF370551_1 RNA polymerase I,
           II and III 24.3 kDa subunit [Arabidopsis thaliana]
           gi|15724322|gb|AAL06554.1|AF412101_1 AT3g22320/MCB17_5
           [Arabidopsis thaliana] gi|3372233|gb|AAC28253.1| RNA
           polymerase I, II and III 24.3 kDa subunit [Arabidopsis
           thaliana] gi|9293866|dbj|BAB01769.1| RNA polymerase I,
           II and III 24.3 kDa subunit [Arabidopsis thaliana]
           gi|21554280|gb|AAM63355.1| RNA polymerase I, II and III
           24.3 kDa subunit [Arabidopsis thaliana]
           gi|25083949|gb|AAN72141.1| RNA polymerase I, II and III
           24.3 kDa subunit [Arabidopsis thaliana]
           gi|332643100|gb|AEE76621.1| DNA-directed RNA polymerase
           II subunit E [Arabidopsis thaliana]
          Length = 205

 Score =  192 bits (489), Expect = 2e-47
 Identities = 95/108 (87%), Positives = 104/108 (96%)
 Frame = +3

Query: 3   ILVVQQNLTPFARSCQAEISSKFQLEVFQEHELLVNIKEHVLVPEHQVLTTEEKKTLLDR 182
           ILVVQQNLTPFAR+C +EISSKF LEVFQE E+LVNIKEHVLVPEHQVLTTEEKKTLL+R
Sbjct: 98  ILVVQQNLTPFARTCISEISSKFHLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLER 157

Query: 183 YTVRETQLPRIQLTDPVARYYGLTRGQVVKIIRPSETAGRYVTYRFVV 326
           YTV+ETQLPRIQ+TDP+ARY+GL RGQVVKIIRPSETAGRYVTYR+VV
Sbjct: 158 YTVKETQLPRIQVTDPIARYFGLKRGQVVKIIRPSETAGRYVTYRYVV 205


>ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrata]
           gi|297331338|gb|EFH61757.1| ATRPABC24.3 [Arabidopsis
           lyrata subsp. lyrata]
          Length = 205

 Score =  192 bits (489), Expect = 2e-47
 Identities = 95/108 (87%), Positives = 104/108 (96%)
 Frame = +3

Query: 3   ILVVQQNLTPFARSCQAEISSKFQLEVFQEHELLVNIKEHVLVPEHQVLTTEEKKTLLDR 182
           ILVVQQNLTPFAR+C +EISSKF LEVFQE E+LVNIKEHVLVPEHQVLTTEEKKTLL+R
Sbjct: 98  ILVVQQNLTPFARTCISEISSKFHLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLER 157

Query: 183 YTVRETQLPRIQLTDPVARYYGLTRGQVVKIIRPSETAGRYVTYRFVV 326
           YTV+ETQLPRIQ+TDP+ARY+GL RGQVVKIIRPSETAGRYVTYR+VV
Sbjct: 158 YTVKETQLPRIQVTDPIARYFGLKRGQVVKIIRPSETAGRYVTYRYVV 205


>ref|XP_002514265.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
           gi|223546721|gb|EEF48219.1| DNA-directed RNA polymerase
           II, putative [Ricinus communis]
          Length = 225

 Score =  190 bits (483), Expect = 9e-47
 Identities = 94/108 (87%), Positives = 103/108 (95%)
 Frame = +3

Query: 3   ILVVQQNLTPFARSCQAEISSKFQLEVFQEHELLVNIKEHVLVPEHQVLTTEEKKTLLDR 182
           ILVVQQ+LTPFAR+C AEI+SKF LEVFQE ELLVNIKEHVLVPEHQVLT EEKKTLL+R
Sbjct: 118 ILVVQQSLTPFARTCIAEIASKFHLEVFQESELLVNIKEHVLVPEHQVLTNEEKKTLLER 177

Query: 183 YTVRETQLPRIQLTDPVARYYGLTRGQVVKIIRPSETAGRYVTYRFVV 326
           YTV+ETQLPRIQ++DP+ARYYGL RGQVVKIIRPSETAGRYVTYR+VV
Sbjct: 178 YTVKETQLPRIQISDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 225


>ref|XP_002331171.1| predicted protein [Populus trichocarpa] gi|222873254|gb|EEF10385.1|
           predicted protein [Populus trichocarpa]
          Length = 206

 Score =  189 bits (480), Expect = 2e-46
 Identities = 93/108 (86%), Positives = 102/108 (94%)
 Frame = +3

Query: 3   ILVVQQNLTPFARSCQAEISSKFQLEVFQEHELLVNIKEHVLVPEHQVLTTEEKKTLLDR 182
           ILVVQQNLTPFAR+C  EIS+KF LEVFQE ELLVNIKEHVLVPEHQVL+ EEKKTLL+R
Sbjct: 99  ILVVQQNLTPFARTCINEISTKFHLEVFQEAELLVNIKEHVLVPEHQVLSNEEKKTLLER 158

Query: 183 YTVRETQLPRIQLTDPVARYYGLTRGQVVKIIRPSETAGRYVTYRFVV 326
           YTV+ETQLPRIQ+TDP+ARYYGL RGQVVKIIRPSETAGRYVTYR+V+
Sbjct: 159 YTVKETQLPRIQITDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVI 206


>emb|CBI28035.3| unnamed protein product [Vitis vinifera]
          Length = 186

 Score =  187 bits (476), Expect = 6e-46
 Identities = 92/108 (85%), Positives = 103/108 (95%)
 Frame = +3

Query: 3   ILVVQQNLTPFARSCQAEISSKFQLEVFQEHELLVNIKEHVLVPEHQVLTTEEKKTLLDR 182
           ILVVQQNLTPFAR+C  EIS+KF LEVFQE ELLVNIKEHVLVPEHQVLT+EEKKTLL+R
Sbjct: 79  ILVVQQNLTPFARTCINEISTKFHLEVFQEAELLVNIKEHVLVPEHQVLTSEEKKTLLER 138

Query: 183 YTVRETQLPRIQLTDPVARYYGLTRGQVVKIIRPSETAGRYVTYRFVV 326
           YTV+ETQLPRIQ++DP+ARY+GL RGQVVKIIRPSETAGRY+TYR+VV
Sbjct: 139 YTVKETQLPRIQVSDPIARYFGLKRGQVVKIIRPSETAGRYITYRYVV 186