BLASTX nr result

ID: Cnidium21_contig00032653 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00032653
         (479 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004162499.1| PREDICTED: LOW QUALITY PROTEIN: DDB1- and CU...    71   8e-11
ref|XP_004136459.1| PREDICTED: DDB1- and CUL4-associated factor ...    71   8e-11
ref|XP_002280997.2| PREDICTED: DDB1- and CUL4-associated factor ...    55   8e-06

>ref|XP_004162499.1| PREDICTED: LOW QUALITY PROTEIN: DDB1- and CUL4-associated factor
           homolog 1-like [Cucumis sativus]
          Length = 1900

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 47/119 (39%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
 Frame = +1

Query: 1   KKDANHSMDSKLASAIS-VRGKDEGRNRIRHVTENFQLDAPRIT-EGVVGDQVAERDSDR 174
           +KD NH +D+K AS+ S ++ +DE R R+R V E   LD  R T E  V DQV +RD++R
Sbjct: 248 QKDGNHLLDAKNASSASGIKVRDESRVRVRQVLETSHLDDSRTTDERSVDDQVFDRDNER 307

Query: 175 SFSR--PAYQPWTDGGESPXXXXXXXXXXXXXXXXXXXWHGQDLRDRKTKCGDRNSQGR 345
             SR  P  Q W  G E P                   WHG D RD +TK GD +   R
Sbjct: 308 GLSRLAPPEQCWV-GEEGPDGLAPRSDGYEVDVEGEERWHGLDFRDGRTKHGDIDDNAR 365


>ref|XP_004136459.1| PREDICTED: DDB1- and CUL4-associated factor homolog 1-like [Cucumis
           sativus]
          Length = 1915

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 47/119 (39%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
 Frame = +1

Query: 1   KKDANHSMDSKLASAIS-VRGKDEGRNRIRHVTENFQLDAPRIT-EGVVGDQVAERDSDR 174
           +KD NH +D+K AS+ S ++ +DE R R+R V E   LD  R T E  V DQV +RD++R
Sbjct: 243 QKDGNHLLDAKNASSASGIKVRDESRVRVRQVLETSHLDDSRTTDERSVDDQVFDRDNER 302

Query: 175 SFSR--PAYQPWTDGGESPXXXXXXXXXXXXXXXXXXXWHGQDLRDRKTKCGDRNSQGR 345
             SR  P  Q W  G E P                   WHG D RD +TK GD +   R
Sbjct: 303 GLSRLAPPEQCWV-GEEGPDGLAPRSDGYEVDVEGEERWHGLDFRDGRTKHGDIDDNAR 360


>ref|XP_002280997.2| PREDICTED: DDB1- and CUL4-associated factor homolog 1-like [Vitis
           vinifera]
          Length = 2024

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 41/117 (35%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
 Frame = +1

Query: 1   KKDANHSMDSK-LASAISVRGKDEGRNRIRHVTENFQLDAPR-ITEGVVGDQVAERDSDR 174
           +KD +H  +SK    A  +RG+DEGR+R+R V E   LD PR I EG + DQ        
Sbjct: 367 QKDGSHIAESKNTPGATCMRGRDEGRSRLRLVLETNHLDDPRIIDEGSLHDQ-------- 418

Query: 175 SFSRPAYQPWTDGGESPXXXXXXXXXXXXXXXXXXXWHGQDLRDRKTKCGDRNSQGR 345
                 Y+   DG +                     WHG+DLRD KTK GD +   R
Sbjct: 419 ---NDMYEVDADGED--------------------RWHGRDLRDLKTKFGDHDENVR 452


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