BLASTX nr result
ID: Cnidium21_contig00032644
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00032644
(304 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containi... 146 1e-33
emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera] 142 2e-32
ref|XP_002518758.1| pentatricopeptide repeat-containing protein,... 141 6e-32
ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containi... 136 2e-30
ref|XP_003624942.1| Pentatricopeptide repeat-containing protein ... 119 2e-25
>ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 891
Score = 146 bits (369), Expect = 1e-33
Identities = 66/101 (65%), Positives = 87/101 (86%)
Frame = +1
Query: 1 LASSVAQTKDSQNSGSLHAFILKRCWIQEHVAVGNAVVDMYAKLGIMESALKVFEELPLK 180
LAS VAQ++D +NS S+H FI++R W+ E V +GNAVVDMYAKLG+++SA KVFE +P+K
Sbjct: 423 LASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVK 482
Query: 181 DLISWNTMITGYAQNGFASEAIEVFNMLEKCEDIKPNEATW 303
D+ISWNT+ITGYAQNG ASEAIEV+ M+E+C++I PN+ TW
Sbjct: 483 DVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTW 523
Score = 57.0 bits (136), Expect = 2e-06
Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 5/81 (6%)
Frame = +1
Query: 73 CW-----IQEHVAVGNAVVDMYAKLGIMESALKVFEELPLKDLISWNTMITGYAQNGFAS 237
CW Q +V V +++ MY++ G A +F+++P +D+ SWN MI+G QNG A+
Sbjct: 239 CWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAA 298
Query: 238 EAIEVFNMLEKCEDIKPNEAT 300
+A++V + + + E IK N T
Sbjct: 299 QALDVLDEM-RLEGIKMNFVT 318
Score = 55.1 bits (131), Expect = 6e-06
Identities = 28/85 (32%), Positives = 49/85 (57%)
Frame = +1
Query: 49 LHAFILKRCWIQEHVAVGNAVVDMYAKLGIMESALKVFEELPLKDLISWNTMITGYAQNG 228
LHA ++ +Q + + +V++YA LG + + F+++P KD+ +WN+MI+ Y NG
Sbjct: 138 LHALLVVAGKVQS-IFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNG 196
Query: 229 FASEAIEVFNMLEKCEDIKPNEATW 303
EAI F L +I+P+ T+
Sbjct: 197 HFHEAIGCFYQLLLVSEIRPDFYTF 221
>emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
Length = 891
Score = 142 bits (359), Expect = 2e-32
Identities = 65/101 (64%), Positives = 86/101 (85%)
Frame = +1
Query: 1 LASSVAQTKDSQNSGSLHAFILKRCWIQEHVAVGNAVVDMYAKLGIMESALKVFEELPLK 180
LAS VAQ++D +NS S+H FI++R W+ E V +GNAVVDMYAKLG+++SA KVFE + +K
Sbjct: 423 LASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVK 482
Query: 181 DLISWNTMITGYAQNGFASEAIEVFNMLEKCEDIKPNEATW 303
D+ISWNT+ITGYAQNG ASEAIEV+ M+E+C++I PN+ TW
Sbjct: 483 DVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTW 523
Score = 57.0 bits (136), Expect = 2e-06
Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 5/81 (6%)
Frame = +1
Query: 73 CW-----IQEHVAVGNAVVDMYAKLGIMESALKVFEELPLKDLISWNTMITGYAQNGFAS 237
CW Q +V V +++ MY++ G A +F+++P +D+ SWN MI+G QNG A+
Sbjct: 239 CWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAA 298
Query: 238 EAIEVFNMLEKCEDIKPNEAT 300
+A++V + + + E IK N T
Sbjct: 299 QALDVLDEM-RLEGIKMNFVT 318
Score = 55.1 bits (131), Expect = 6e-06
Identities = 28/85 (32%), Positives = 49/85 (57%)
Frame = +1
Query: 49 LHAFILKRCWIQEHVAVGNAVVDMYAKLGIMESALKVFEELPLKDLISWNTMITGYAQNG 228
LHA ++ +Q + + +V++YA LG + + F+++P KD+ +WN+MI+ Y NG
Sbjct: 138 LHALLVVAGKVQS-IFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNG 196
Query: 229 FASEAIEVFNMLEKCEDIKPNEATW 303
EAI F L +I+P+ T+
Sbjct: 197 HFHEAIGCFYQLLLVSEIRPDFYTF 221
>ref|XP_002518758.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223542139|gb|EEF43683.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 379
Score = 141 bits (355), Expect = 6e-32
Identities = 64/101 (63%), Positives = 79/101 (78%)
Frame = +1
Query: 1 LASSVAQTKDSQNSGSLHAFILKRCWIQEHVAVGNAVVDMYAKLGIMESALKVFEELPLK 180
LAS VAQ D QNS S+H F+ +R W + +GNAVVDMYAKLG ESA VFE LP+K
Sbjct: 165 LASIVAQLNDHQNSRSIHGFVTRRGWFMKDTVIGNAVVDMYAKLGATESARAVFERLPVK 224
Query: 181 DLISWNTMITGYAQNGFASEAIEVFNMLEKCEDIKPNEATW 303
D+ISWNT+ITGYAQNG ASEAIEV+NM+E+C+++ P + TW
Sbjct: 225 DVISWNTLITGYAQNGLASEAIEVYNMMEECKEVSPTQGTW 265
Score = 57.0 bits (136), Expect = 2e-06
Identities = 23/51 (45%), Positives = 36/51 (70%)
Frame = +1
Query: 118 MYAKLGIMESALKVFEELPLKDLISWNTMITGYAQNGFASEAIEVFNMLEK 270
MYAK G++ A K+F+E+P++D SWN MI+GY QNG E +++ + + K
Sbjct: 1 MYAKFGLVGEARKLFDEMPIRDCGSWNAMISGYCQNGNVVEVLDIVDEMRK 51
>ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 848
Score = 136 bits (343), Expect = 2e-30
Identities = 60/101 (59%), Positives = 83/101 (82%)
Frame = +1
Query: 1 LASSVAQTKDSQNSGSLHAFILKRCWIQEHVAVGNAVVDMYAKLGIMESALKVFEELPLK 180
LAS AQ++D +NS S+H FI++R W+ E V +GNAV+DMYAKLG+++SA KVF +P+K
Sbjct: 380 LASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVK 439
Query: 181 DLISWNTMITGYAQNGFASEAIEVFNMLEKCEDIKPNEATW 303
D++SWNT+I+GY QNG ASEAIEV+ M+E+C +IK N+ TW
Sbjct: 440 DVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTW 480
Score = 57.4 bits (137), Expect = 1e-06
Identities = 26/70 (37%), Positives = 46/70 (65%)
Frame = +1
Query: 16 AQTKDSQNSGSLHAFILKRCWIQEHVAVGNAVVDMYAKLGIMESALKVFEELPLKDLISW 195
AQ D + +H +++K ++ + V NA+++MYAK G + A KVF+++ L+D++SW
Sbjct: 284 AQLGDISTATLIHLYVIKH-GLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSW 342
Query: 196 NTMITGYAQN 225
N++I Y QN
Sbjct: 343 NSIIAAYEQN 352
Score = 55.5 bits (132), Expect = 5e-06
Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 5/81 (6%)
Frame = +1
Query: 73 CWI-----QEHVAVGNAVVDMYAKLGIMESALKVFEELPLKDLISWNTMITGYAQNGFAS 237
CW+ Q V V +++ MY++ G + A +F+++P +D+ SWN MI+G QNG A+
Sbjct: 196 CWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAA 255
Query: 238 EAIEVFNMLEKCEDIKPNEAT 300
+A++V + + + E I + T
Sbjct: 256 QALDVLDEM-RLEGINMDSVT 275
>ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499957|gb|AES81160.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 1092
Score = 119 bits (299), Expect = 2e-25
Identities = 53/101 (52%), Positives = 73/101 (72%)
Frame = +1
Query: 1 LASSVAQTKDSQNSGSLHAFILKRCWIQEHVAVGNAVVDMYAKLGIMESALKVFEELPLK 180
L S +Q D + S S+ F+++R W+ + V +GNA+V+MYAKLG M A VF++LP K
Sbjct: 329 LTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRK 388
Query: 181 DLISWNTMITGYAQNGFASEAIEVFNMLEKCEDIKPNEATW 303
D ISWNT++TGY QNG ASEAI+ +NM+E+C D PN+ TW
Sbjct: 389 DTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTW 429
Score = 62.8 bits (151), Expect = 3e-08
Identities = 30/84 (35%), Positives = 51/84 (60%)
Frame = +1
Query: 16 AQTKDSQNSGSLHAFILKRCWIQEHVAVGNAVVDMYAKLGIMESALKVFEELPLKDLISW 195
AQ+ D N +H +LK + V V NA+++MY+K G ++ A VF+++ ++DL+SW
Sbjct: 233 AQSDDVINGVLIHLHVLKH-GLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSW 291
Query: 196 NTMITGYAQNGFASEAIEVFNMLE 267
N++I Y QN S A+ F ++
Sbjct: 292 NSIIAAYEQNNDPSTALRFFKGMQ 315
Score = 60.1 bits (144), Expect = 2e-07
Identities = 29/73 (39%), Positives = 50/73 (68%)
Frame = +1
Query: 82 QEHVAVGNAVVDMYAKLGIMESALKVFEELPLKDLISWNTMITGYAQNGFASEAIEVFNM 261
++ V V ++V +Y++ G+++ A KVF ++P+KD+ SWN MI+G+ QNG A+ A+ V N
Sbjct: 153 EDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNR 212
Query: 262 LEKCEDIKPNEAT 300
+ K E +K + T
Sbjct: 213 M-KGEGVKMDTIT 224