BLASTX nr result
ID: Cnidium21_contig00032551
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00032551
(1440 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002278152.1| PREDICTED: pentatricopeptide repeat-containi... 348 e-114
ref|XP_002330193.1| predicted protein [Populus trichocarpa] gi|2... 348 e-111
ref|XP_002892489.1| pentatricopeptide repeat-containing protein ... 314 e-102
ref|XP_003535324.1| PREDICTED: pentatricopeptide repeat-containi... 325 e-102
ref|XP_003591206.1| Pentatricopeptide repeat-containing protein ... 320 e-101
>ref|XP_002278152.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09190
[Vitis vinifera]
Length = 485
Score = 348 bits (893), Expect(2) = e-114
Identities = 166/252 (65%), Positives = 205/252 (81%)
Frame = +1
Query: 190 GFDPDETTVVIMLPICARLGEDDGVGEWIHSYAKSSGLFLDFISVGNSLIDYYCKRGVLE 369
GF+PD+ TVV +LP+CARLG D VGEWIHSYA+SS L DFISVGNSL+D+YCK G+LE
Sbjct: 234 GFEPDDATVVTILPVCARLGAVD-VGEWIHSYAESSRLLRDFISVGNSLVDFYCKCGILE 292
Query: 370 RAFSVFRDMPRKNVVSWNAMISGQAFNGNGERGIALFDEMINEYGVTPNDATFVGALTCC 549
A+ VF +MP+KNVVSWNAMISG FNG GE G LF+EMIN+ GV PNDATFVG L+CC
Sbjct: 293 TAWRVFNEMPQKNVVSWNAMISGLTFNGKGELGADLFEEMINK-GVRPNDATFVGVLSCC 351
Query: 550 SHAGLVKRGGELLSSMVSNYGIYPKLEHYGCMVDLLGRGGCVKEAYDLTKAMPIKPNAAI 729
+HAGLV+RG L +SM ++ + PKLEH+GCMVDLL R GC++EA DL + MP++PNA +
Sbjct: 352 AHAGLVERGRNLFTSMTVDHKMEPKLEHFGCMVDLLARNGCMEEARDLVRTMPMRPNAVL 411
Query: 730 WGSLLNACRHFDDIELAVLAAKELIEVEPWNSGNYVLLSNLYAEKGQWNEVENIRLLMKK 909
WGSLL+A R D++ A A KELIE+EPWNSGNYVLLSN+YAE G+W+EVE +R LMK+
Sbjct: 412 WGSLLSAYRTIGDVKHAECAVKELIELEPWNSGNYVLLSNVYAEDGKWDEVEKVRALMKE 471
Query: 910 NSLQKEPGQSMV 945
+++K PGQSMV
Sbjct: 472 KNIRKNPGQSMV 483
Score = 91.3 bits (225), Expect(2) = e-114
Identities = 39/60 (65%), Positives = 50/60 (83%)
Frame = +2
Query: 2 RDVIVWNLMVYGFCKTGDVELGLRYFRGMTERTVISWNSMISGLAQCGLDSEAMKLFQEM 181
RDVIVWN+M+ GFCK GD+E+G R FR M +R+V+SWNSMI+GL Q G D EA++LF+EM
Sbjct: 171 RDVIVWNMMIRGFCKVGDIEMGFRLFRQMRDRSVVSWNSMIAGLEQSGRDGEALELFREM 230
Score = 75.1 bits (183), Expect(2) = 5e-13
Identities = 83/310 (26%), Positives = 131/310 (42%), Gaps = 36/310 (11%)
Frame = +1
Query: 181 ENDGFDPDETTVVIMLPICARLGEDDGVGEWIHSYAKSSGLFLDFISVGNSLIDYY---- 348
+N G PDE T +L C+ + D+ +G+ +H G F F S+ +ID Y
Sbjct: 99 KNRGIWPDEFTFAPLLKSCSGIC-DNRIGKGVHGVVIVVG-FERFSSIRIGIIDLYTSCG 156
Query: 349 ---------------------------CKRGVLERAFSVFRDMPRKNVVSWNAMISGQAF 447
CK G +E F +FR M ++VVSWN+MI+G
Sbjct: 157 RMEDAKKVFDEMLDRDVIVWNMMIRGFCKVGDIEMGFRLFRQMRDRSVVSWNSMIAGLEQ 216
Query: 448 NGNGERGIALFDEMINEYGVTPNDATFVGALTCCSHAGLVKRGGELLSSMVSNYGIYPKL 627
+G + LF EM ++G P+DAT V L C+ G V G + S S+ + +
Sbjct: 217 SGRDGEALELFREMW-DHGFEPDDATVVTILPVCARLGAVDVGEWIHSYAESSRLLRDFI 275
Query: 628 EHYGCMVDLLGRGGCVKEAYDLTKAMPIKPNAAIWGSLLNACRHFDDIELAVLAAKELIE 807
+VD + G ++ A+ + MP K N W ++++ EL +E+I
Sbjct: 276 SVGNSLVDFYCKCGILETAWRVFNEMPQK-NVVSWNAMISGLTFNGKGELGADLFEEMIN 334
Query: 808 --VEPWNSGNYVLLSNLYAEKGQWNEVENIRLLM---KKNSLQKEPGQSMV**LS*RGLI 972
V P N +V + + A G N+ M K + E MV L+ G +
Sbjct: 335 KGVRP-NDATFVGVLSCCAHAGLVERGRNLFTSMTVDHKMEPKLEHFGCMVDLLARNGCM 393
Query: 973 D*RRFLVQTI 1002
+ R LV+T+
Sbjct: 394 EEARDLVRTM 403
Score = 26.6 bits (57), Expect(2) = 5e-13
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 101 VISWNSMISGLAQCGLDSEAMKLFQEMR 184
++ +NSMI G + CG ++ LF +M+
Sbjct: 72 LLLFNSMIKGYSLCGPSENSLLLFSQMK 99
>ref|XP_002330193.1| predicted protein [Populus trichocarpa] gi|222871649|gb|EEF08780.1|
predicted protein [Populus trichocarpa]
Length = 485
Score = 348 bits (893), Expect(2) = e-111
Identities = 167/253 (66%), Positives = 209/253 (82%), Gaps = 1/253 (0%)
Frame = +1
Query: 190 GFDPDETTVVIMLPICARLGEDDGVGEWIHSYAKSSGLFLDFISVGNSLIDYYCKRGVLE 369
GF PDE TVV +LPICARLG D VG+WIHSYAKSSGL+ DF++VGN+L+D+Y K G+ E
Sbjct: 234 GFKPDEATVVTVLPICARLGSVD-VGKWIHSYAKSSGLYRDFVAVGNALVDFYNKSGMFE 292
Query: 370 RAFSVFRDMPRKNVVSWNAMISGQAFNGNGERGIALFDEMINEYGVTPNDATFVGALTCC 549
A VF +MPRKNV+SWN +ISG A NGNGE G+ L +EM+NE GV PNDATFVG L+CC
Sbjct: 293 TARRVFDEMPRKNVISWNTLISGLALNGNGELGVELLEEMMNE-GVRPNDATFVGVLSCC 351
Query: 550 SHAGLVKRGGELLSSMVSNYGIYPKLEHYGCMVDLLGRGGCVKEAYDLTKAMP-IKPNAA 726
+HAGL +RG ELL+SMV ++ I PKLEHYGCMVDLLGR GCV+EAYDL + MP PNAA
Sbjct: 352 AHAGLFERGRELLASMVEHHQIEPKLEHYGCMVDLLGRSGCVREAYDLIRIMPGGAPNAA 411
Query: 727 IWGSLLNACRHFDDIELAVLAAKELIEVEPWNSGNYVLLSNLYAEKGQWNEVENIRLLMK 906
+WGSLL+ACR D+ELA LA KELI++EPWNSGNYVLLSN+YAE+ +W++V N+R +M+
Sbjct: 412 LWGSLLSACRTHGDVELAHLAVKELIDLEPWNSGNYVLLSNMYAEEERWDKVANVRGMMR 471
Query: 907 KNSLQKEPGQSMV 945
+ +++K PGQS++
Sbjct: 472 EKNVKKTPGQSVI 484
Score = 83.6 bits (205), Expect(2) = e-111
Identities = 39/60 (65%), Positives = 48/60 (80%)
Frame = +2
Query: 2 RDVIVWNLMVYGFCKTGDVELGLRYFRGMTERTVISWNSMISGLAQCGLDSEAMKLFQEM 181
RDVIVWNLM++GFCK GDV++GL FR M +R+V+SWN MIS LAQ DSEA+ LF +M
Sbjct: 171 RDVIVWNLMIHGFCKRGDVDMGLCLFRQMRKRSVVSWNIMISCLAQSRRDSEALGLFHDM 230
Score = 78.6 bits (192), Expect(2) = 3e-14
Identities = 73/270 (27%), Positives = 118/270 (43%), Gaps = 33/270 (12%)
Frame = +1
Query: 157 SYEAVSGNENDGFDPDETTVVIMLPICARLGEDDGVGEWIHSYA---------------- 288
S+ S +N G PDE T+ +L C+ LG +G+ +H
Sbjct: 91 SFRLFSSMKNRGIWPDEYTLAPLLKACSSLGVLQ-LGKCMHKEVLVVGFEGFSAIRIGVI 149
Query: 289 ---KSSGLFLDF-----------ISVGNSLIDYYCKRGVLERAFSVFRDMPRKNVVSWNA 426
S G+ D + V N +I +CKRG ++ +FR M +++VVSWN
Sbjct: 150 ELYSSCGVMEDAEKVFDEMYQRDVIVWNLMIHGFCKRGDVDMGLCLFRQMRKRSVVSWNI 209
Query: 427 MISGQAFNGNGERGIALFDEMINEYGVTPNDATFVGALTCCSHAGLVKRGGELLSSMVSN 606
MIS A + + LF +M+ ++G P++AT V L C+ G V G+ + S +
Sbjct: 210 MISCLAQSRRDSEALGLFHDML-DWGFKPDEATVVTVLPICARLGSVD-VGKWIHSYAKS 267
Query: 607 YGIYPKLEHYG-CMVDLLGRGGCVKEAYDLTKAMPIKPNAAIWGSLLNACRHFDDIELAV 783
G+Y G +VD + G + A + MP K N W +L++ + EL V
Sbjct: 268 SGLYRDFVAVGNALVDFYNKSGMFETARRVFDEMPRK-NVISWNTLISGLALNGNGELGV 326
Query: 784 LAAKELIE--VEPWNSGNYVLLSNLYAEKG 867
+E++ V P N +V + + A G
Sbjct: 327 ELLEEMMNEGVRP-NDATFVGVLSCCAHAG 355
Score = 27.3 bits (59), Expect(2) = 3e-14
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 71 RYFRGMTERTVISWNSMISGLAQCGLDSEAMKLFQEMR 184
R F+ T+I +N+MI G + G E+ +LF M+
Sbjct: 62 RIFKQTQNPTIILFNAMIKGYSLNGPFEESFRLFSSMK 99
>ref|XP_002892489.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297338331|gb|EFH68748.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 1014
Score = 314 bits (804), Expect(2) = e-102
Identities = 151/254 (59%), Positives = 190/254 (74%)
Frame = +1
Query: 184 NDGFDPDETTVVIMLPICARLGEDDGVGEWIHSYAKSSGLFLDFISVGNSLIDYYCKRGV 363
+ GFDPDE TVV MLPI A LG D G+WIHS A+S+GL DFI+VGN+L+D+YCK G
Sbjct: 749 DQGFDPDEATVVTMLPISASLGVLD-TGKWIHSTAESNGLIKDFITVGNALVDFYCKSGD 807
Query: 364 LERAFSVFRDMPRKNVVSWNAMISGQAFNGNGERGIALFDEMINEYGVTPNDATFVGALT 543
LE A ++FR M R+NVVSWN MISG A NG GE GI LFD MI E V PN+ATF+G L
Sbjct: 808 LEAATAIFRKMQRRNVVSWNTMISGSAVNGKGESGIDLFDAMIEEGKVAPNEATFLGVLA 867
Query: 544 CCSHAGLVKRGGELLSSMVSNYGIYPKLEHYGCMVDLLGRGGCVKEAYDLTKAMPIKPNA 723
CCS+ G V+RG EL M+ + + P+ EHYG MVDL+ R G ++EA++ + MP+ NA
Sbjct: 868 CCSYTGQVERGEELFGLMMERFKLEPRTEHYGAMVDLMSRSGRIREAFEFLRNMPVNANA 927
Query: 724 AIWGSLLNACRHFDDIELAVLAAKELIEVEPWNSGNYVLLSNLYAEKGQWNEVENIRLLM 903
A+WGSLL+ACR D++LA LAA EL+++EP NSGNYVLLSNLYAE+G+W +VE +R LM
Sbjct: 928 AMWGSLLSACRSHGDVKLAELAAMELVKIEPGNSGNYVLLSNLYAEEGRWQDVEKVRTLM 987
Query: 904 KKNSLQKEPGQSMV 945
KKN L+K GQS +
Sbjct: 988 KKNCLRKTTGQSTI 1001
Score = 87.0 bits (214), Expect(2) = e-102
Identities = 37/60 (61%), Positives = 51/60 (85%)
Frame = +2
Query: 2 RDVIVWNLMVYGFCKTGDVELGLRYFRGMTERTVISWNSMISGLAQCGLDSEAMKLFQEM 181
R+V+VWNLMV GFC +GDV+ GL +F+ M+ER+++SWNSMIS L++CG D EA++LF EM
Sbjct: 688 RNVVVWNLMVRGFCDSGDVQRGLSFFKQMSERSIVSWNSMISSLSKCGRDREALELFCEM 747
Score = 63.9 bits (154), Expect = 1e-07
Identities = 40/144 (27%), Positives = 74/144 (51%)
Frame = +1
Query: 316 ISVGNSLIDYYCKRGVLERAFSVFRDMPRKNVVSWNAMISGQAFNGNGERGIALFDEMIN 495
+ V N ++ +C G ++R S F+ M +++VSWN+MIS + G + LF EMI+
Sbjct: 690 VVVWNLMVRGFCDSGDVQRGLSFFKQMSERSIVSWNSMISSLSKCGRDREALELFCEMID 749
Query: 496 EYGVTPNDATFVGALTCCSHAGLVKRGGELLSSMVSNYGIYPKLEHYGCMVDLLGRGGCV 675
+ G P++AT V L + G++ G + S+ SN I + +VD + G +
Sbjct: 750 Q-GFDPDEATVVTMLPISASLGVLDTGKWIHSTAESNGLIKDFITVGNALVDFYCKSGDL 808
Query: 676 KEAYDLTKAMPIKPNAAIWGSLLN 747
+ A + + M + N W ++++
Sbjct: 809 EAATAIFRKMQ-RRNVVSWNTMIS 831
>ref|XP_003535324.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Glycine max]
Length = 483
Score = 325 bits (833), Expect(2) = e-102
Identities = 153/250 (61%), Positives = 197/250 (78%)
Frame = +1
Query: 190 GFDPDETTVVIMLPICARLGEDDGVGEWIHSYAKSSGLFLDFISVGNSLIDYYCKRGVLE 369
GF+PD+ ++V +LP+CARLG D +GEWIHSYA S G D I+VGNSL+D+YCK G L+
Sbjct: 233 GFEPDDASLVTVLPVCARLGAVD-IGEWIHSYANSKGFLQDTINVGNSLVDFYCKCGNLQ 291
Query: 370 RAFSVFRDMPRKNVVSWNAMISGQAFNGNGERGIALFDEMINEYGVTPNDATFVGALTCC 549
A+S+F DM KNVVSWNAMISG A+NG GE G+ LF+EM++ G PND+TFVG L CC
Sbjct: 292 AAWSIFNDMASKNVVSWNAMISGLAYNGEGEVGVNLFEEMVHG-GFEPNDSTFVGVLACC 350
Query: 550 SHAGLVKRGGELLSSMVSNYGIYPKLEHYGCMVDLLGRGGCVKEAYDLTKAMPIKPNAAI 729
+H GLV RG +L +SM + + PKLEHYGC+VDLLGR G V+EA DL +MP+KP AA+
Sbjct: 351 AHVGLVDRGRDLFASMSVKFKVSPKLEHYGCVVDLLGRCGHVREARDLITSMPLKPTAAL 410
Query: 730 WGSLLNACRHFDDIELAVLAAKELIEVEPWNSGNYVLLSNLYAEKGQWNEVENIRLLMKK 909
WG+LL+ACR + D E+A AAKEL+ +EPWNSGNYVLLSN+YAE+G+W+EVE +R+LM+
Sbjct: 411 WGALLSACRTYGDREIAENAAKELVRLEPWNSGNYVLLSNVYAEEGRWDEVEKVRVLMRG 470
Query: 910 NSLQKEPGQS 939
++K PGQS
Sbjct: 471 GGVKKVPGQS 480
Score = 75.1 bits (183), Expect(2) = e-102
Identities = 33/59 (55%), Positives = 45/59 (76%)
Frame = +2
Query: 5 DVIVWNLMVYGFCKTGDVELGLRYFRGMTERTVISWNSMISGLAQCGLDSEAMKLFQEM 181
DV+VWNLM+ GFCK GD+E G++ F M ERTV+SWN M+S LA+ + +A++LF EM
Sbjct: 171 DVVVWNLMIRGFCKMGDLETGMKVFGQMKERTVVSWNLMMSCLAKNNKEEKALELFNEM 229
Score = 75.5 bits (184), Expect = 3e-11
Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 1/164 (0%)
Frame = +1
Query: 316 ISVGNSLIDYYCKRGVLERAFSVFRDMPRKNVVSWNAMISGQAFNGNGERGIALFDEMIN 495
+ V N +I +CK G LE VF M + VVSWN M+S A N E+ + LF+EM+
Sbjct: 172 VVVWNLMIRGFCKMGDLETGMKVFGQMKERTVVSWNLMMSCLAKNNKEEKALELFNEML- 230
Query: 496 EYGVTPNDATFVGALTCCSHAGLVKRGGELLSSMVSNYGIYPKLEHYG-CMVDLLGRGGC 672
E G P+DA+ V L C+ G V GE + S ++ G + G +VD + G
Sbjct: 231 EQGFEPDDASLVTVLPVCARLGAVDI-GEWIHSYANSKGFLQDTINVGNSLVDFYCKCGN 289
Query: 673 VKEAYDLTKAMPIKPNAAIWGSLLNACRHFDDIELAVLAAKELI 804
++ A+ + M K N W ++++ + + E+ V +E++
Sbjct: 290 LQAAWSIFNDMASK-NVVSWNAMISGLAYNGEGEVGVNLFEEMV 332
>ref|XP_003591206.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480254|gb|AES61457.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 490
Score = 320 bits (820), Expect(2) = e-101
Identities = 153/250 (61%), Positives = 193/250 (77%)
Frame = +1
Query: 190 GFDPDETTVVIMLPICARLGEDDGVGEWIHSYAKSSGLFLDFISVGNSLIDYYCKRGVLE 369
GF+PD+ T+V +LP+CARLG+ D GEWIHSYA GL ISVGNSL+D+YCK G LE
Sbjct: 235 GFEPDDATLVTVLPVCARLGDVDA-GEWIHSYADGKGLLRKVISVGNSLVDFYCKCGNLE 293
Query: 370 RAFSVFRDMPRKNVVSWNAMISGQAFNGNGERGIALFDEMINEYGVTPNDATFVGALTCC 549
A+ VF +M +KNVVSWNAMISG NG GE G+ LF++M + GVTP+D+TFVG L CC
Sbjct: 294 AAWKVFNEMTKKNVVSWNAMISGLGLNGKGELGVELFEKMARK-GVTPSDSTFVGVLACC 352
Query: 550 SHAGLVKRGGELLSSMVSNYGIYPKLEHYGCMVDLLGRGGCVKEAYDLTKAMPIKPNAAI 729
+HAG V +G E+ SM + + PKLEHYGC+VDLLGR G VKEAYDL + MP+ PNAA+
Sbjct: 353 AHAGFVDKGREIFDSMTVKFKLSPKLEHYGCVVDLLGRCGHVKEAYDLIRNMPLMPNAAL 412
Query: 730 WGSLLNACRHFDDIELAVLAAKELIEVEPWNSGNYVLLSNLYAEKGQWNEVENIRLLMKK 909
WG+LL+ACR D E+A +AAKEL+ +EP NSGNYVLLSN+YAE+ +WNEVE +R+LM+
Sbjct: 413 WGALLSACRTHGDREVAEIAAKELVRLEPGNSGNYVLLSNVYAEERKWNEVEKVRVLMQG 472
Query: 910 NSLQKEPGQS 939
++K PGQS
Sbjct: 473 VGIKKNPGQS 482
Score = 77.8 bits (190), Expect(2) = e-101
Identities = 34/60 (56%), Positives = 47/60 (78%)
Frame = +2
Query: 2 RDVIVWNLMVYGFCKTGDVELGLRYFRGMTERTVISWNSMISGLAQCGLDSEAMKLFQEM 181
R+V+VWN+M+ GFCK GD+E+GL+ F+ M +R+V+SWN MIS LAQ D EA +F+EM
Sbjct: 172 REVVVWNIMINGFCKMGDLEIGLKLFKRMGQRSVVSWNLMISCLAQRKKDGEAFGIFREM 231
Score = 68.6 bits (166), Expect = 4e-09
Identities = 47/145 (32%), Positives = 73/145 (50%), Gaps = 1/145 (0%)
Frame = +1
Query: 316 ISVGNSLIDYYCKRGVLERAFSVFRDMPRKNVVSWNAMISGQAFNGNGERGIALFDEMIN 495
+ V N +I+ +CK G LE +F+ M +++VVSWN MIS A +F EM+
Sbjct: 174 VVVWNIMINGFCKMGDLEIGLKLFKRMGQRSVVSWNLMISCLAQRKKDGEAFGIFREML- 232
Query: 496 EYGVTPNDATFVGALTCCSHAGLVKRGGELLSSMVSNYGIYPKLEHYG-CMVDLLGRGGC 672
E G P+DAT V L C+ G V GE + S G+ K+ G +VD + G
Sbjct: 233 EQGFEPDDATLVTVLPVCARLGDVD-AGEWIHSYADGKGLLRKVISVGNSLVDFYCKCGN 291
Query: 673 VKEAYDLTKAMPIKPNAAIWGSLLN 747
++ A+ + M K N W ++++
Sbjct: 292 LEAAWKVFNEM-TKKNVVSWNAMIS 315