BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00032468
         (369 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...    93   3e-17
emb|CBI34757.3| unnamed protein product [Vitis vinifera]               92   3e-17
ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub...    88   8e-16
gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycope...    87   1e-15
ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocar...    84   1e-14

>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Vitis vinifera]
          Length = 1560

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 42/72 (58%), Positives = 51/72 (70%)
 Frame = +2

Query: 5    ALFFHPRSSEKIGSGLKEIKIGLSSKSSTSRCFLLVRTDDTIEDFSYHKCIHNGLKLIAS 184
            AL+FHPR  EKIG G + IK+   SK   +RCF LVRTD T EDFSYHKC+H  L++I  
Sbjct: 1416 ALYFHPRRDEKIGPGAQNIKVRYHSKYHNTRCFSLVRTDGTEEDFSYHKCVHGALEIIDP 1475

Query: 185  ESAETYQSRWLS 220
              A +YQSRWL+
Sbjct: 1476 RRARSYQSRWLT 1487


>emb|CBI34757.3| unnamed protein product [Vitis vinifera]
          Length = 1359

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 42/71 (59%), Positives = 50/71 (70%)
 Frame = +2

Query: 5    ALFFHPRSSEKIGSGLKEIKIGLSSKSSTSRCFLLVRTDDTIEDFSYHKCIHNGLKLIAS 184
            AL+FHPR  EKIG G + IK+   SK   +RCF LVRTD T EDFSYHKC+H  L++I  
Sbjct: 1274 ALYFHPRRDEKIGPGAQNIKVRYHSKYHNTRCFSLVRTDGTEEDFSYHKCVHGALEIIDP 1333

Query: 185  ESAETYQSRWL 217
              A +YQSRWL
Sbjct: 1334 RRARSYQSRWL 1344


>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
            sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
            QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Cucumis sativus]
          Length = 1469

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 37/71 (52%), Positives = 51/71 (71%)
 Frame = +2

Query: 5    ALFFHPRSSEKIGSGLKEIKIGLSSKSSTSRCFLLVRTDDTIEDFSYHKCIHNGLKLIAS 184
            AL+FHP   EKIG G ++IK+G  SK   +RCF+L+R+D T EDFSYHKC+   L++IA 
Sbjct: 1394 ALYFHPHRDEKIGVGAQDIKVGSHSKYQNTRCFVLIRSDGTTEDFSYHKCVLGALEIIAP 1453

Query: 185  ESAETYQSRWL 217
               + YQS+W+
Sbjct: 1454 HRVKGYQSKWM 1464


>gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
          Length = 1138

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 44/74 (59%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
 Frame = +2

Query: 5    ALFFHPRSSEKIGSGL-KEIKIGLSSKSSTSRCFLLVRTDDTIEDFSYHKCIHNGLKLIA 181
            AL FHPR +EKIG G  KEIKIG   +   SRCF++VR+DDT+EDFSY KC+ + L+LIA
Sbjct: 1064 ALQFHPRRNEKIGKGAPKEIKIGYHQEFEGSRCFMVVRSDDTVEDFSYRKCMQHALELIA 1123

Query: 182  SESAETYQSRWLSG 223
             + A+T  SRWL+G
Sbjct: 1124 PQKAKT--SRWLNG 1135


>ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocarpa]
            gi|222845329|gb|EEE82876.1| RNA polymerase IV subunit
            [Populus trichocarpa]
          Length = 1517

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 38/73 (52%), Positives = 52/73 (71%)
 Frame = +2

Query: 8    LFFHPRSSEKIGSGLKEIKIGLSSKSSTSRCFLLVRTDDTIEDFSYHKCIHNGLKLIASE 187
            L+FHPR  EKIG G K+IK+    +   +RCF LVRTD TIEDFSY KC+HN L++IA +
Sbjct: 1429 LYFHPRRDEKIGIGAKDIKVINHPEYQDTRCFSLVRTDGTIEDFSYRKCLHNALEIIAPQ 1488

Query: 188  SAETYQSRWLSGR 226
             A+ Y  ++L+ +
Sbjct: 1489 RAKRYCEKYLTSK 1501