BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00032414
         (449 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABH07409.1| putative pol polyprotein [Brassica oleracea var. ...   206   2e-51
gb|AAC95173.1| putative retroelement pol polyprotein [Arabidopsi...   201   5e-50
gb|ABW74566.1| integrase [Boechera divaricarpa]                       191   7e-47
gb|AAD32898.1| putative retroelement pol polyprotein [Arabidopsi...   190   1e-46
gb|AAN65018.1| putative polyprotein [Oryza sativa Japonica Group...   189   3e-46

>gb|ABH07409.1| putative pol polyprotein [Brassica oleracea var. botrytis]
          Length = 1239

 Score =  206 bits (523), Expect = 2e-51
 Identities = 95/148 (64%), Positives = 114/148 (77%)
 Frame = -2

Query: 445 SRFMWVYFLKSKDEAFKVFKCFRAQVEKSTERKIKVLRTDRGGEFTSKDFKDYCESAGIE 266
           +R+MW   LK K E F+ FK F+A VEK   + I  LRTDRGGEFTS+DF+DYC + GI 
Sbjct: 423 TRYMWSILLKEKSEVFEKFKTFKALVEKEVNKVIVTLRTDRGGEFTSRDFQDYCNNNGIR 482

Query: 265 RHYTTPYTPQQNGVVERRNRTIVEMARSCMKETNLPKRMWGEAVRHSVYILNRVPTRALT 86
           RH T PYTPQQNGVVERRNRT++EM RS +K  N+P  MWGEAVRH+ Y++NRVPTRAL 
Sbjct: 483 RHLTAPYTPQQNGVVERRNRTLMEMTRSMLKAMNVPNYMWGEAVRHATYLINRVPTRALK 542

Query: 85  NLTPYEARYKRKPNLSYIRVFGCLAYMK 2
           N TPYE+   RKP++ +IRVFGCLAY K
Sbjct: 543 NQTPYESFKGRKPSIGHIRVFGCLAYAK 570


>gb|AAC95173.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1200

 Score =  201 bits (511), Expect = 5e-50
 Identities = 92/149 (61%), Positives = 115/149 (77%)
 Frame = -2

Query: 448 YSRFMWVYFLKSKDEAFKVFKCFRAQVEKSTERKIKVLRTDRGGEFTSKDFKDYCESAGI 269
           +SRFMW + LK K EAF  FK F+A VE+ T  KIK LRTDRGGEF S++F+ +CE  GI
Sbjct: 478 HSRFMWSFLLKEKSEAFGKFKTFKATVEQETGEKIKTLRTDRGGEFLSQEFQTFCEEEGI 537

Query: 268 ERHYTTPYTPQQNGVVERRNRTIVEMARSCMKETNLPKRMWGEAVRHSVYILNRVPTRAL 89
            RH T PYTPQQNGVVERRNRT++ M RS MK  ++P  +WGEA+RH+ Y++NRV TRAL
Sbjct: 538 IRHLTAPYTPQQNGVVERRNRTLLGMTRSIMKHMSVPNYLWGEAIRHATYLINRVGTRAL 597

Query: 88  TNLTPYEARYKRKPNLSYIRVFGCLAYMK 2
            N TPYEA  K+KPN+ ++RVFGC++Y K
Sbjct: 598 INQTPYEALKKKKPNVEHLRVFGCVSYAK 626


>gb|ABW74566.1| integrase [Boechera divaricarpa]
          Length = 1165

 Score =  191 bits (484), Expect = 7e-47
 Identities = 90/147 (61%), Positives = 111/147 (75%)
 Frame = -2

Query: 448 YSRFMWVYFLKSKDEAFKVFKCFRAQVEKSTERKIKVLRTDRGGEFTSKDFKDYCESAGI 269
           YSR  WVYFLKSK EAF +FK F+A VEK +E+++KVLRTDRGGEFTS  F  +CE  GI
Sbjct: 368 YSRMSWVYFLKSKGEAFDMFKNFKALVEKQSEQQVKVLRTDRGGEFTSTKFNQFCEKEGI 427

Query: 268 ERHYTTPYTPQQNGVVERRNRTIVEMARSCMKETNLPKRMWGEAVRHSVYILNRVPTRAL 89
               TT YTP+QNGV ER+N T+VEMARS +KE NLP + W E+VR +VY+LN  PT+A+
Sbjct: 428 HHELTTAYTPEQNGVAERKNTTVVEMARSMLKERNLPNQFWAESVRTAVYLLNISPTKAV 487

Query: 88  TNLTPYEARYKRKPNLSYIRVFGCLAY 8
            N TPYEA   RKP +S++RVFG + Y
Sbjct: 488 LNRTPYEAWCGRKPGVSHLRVFGSVCY 514


>gb|AAD32898.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1307

 Score =  190 bits (482), Expect = 1e-46
 Identities = 85/149 (57%), Positives = 111/149 (74%)
 Frame = -2

Query: 448 YSRFMWVYFLKSKDEAFKVFKCFRAQVEKSTERKIKVLRTDRGGEFTSKDFKDYCESAGI 269
           ++R+MW   LK K EAF+ F+ F+ +VE+ +  KIK  RTD+GGEF S++F+D+C   GI
Sbjct: 482 HTRYMWSMLLKEKSEAFEKFRDFKTKVEQESGVKIKTFRTDKGGEFVSQEFQDFCAKEGI 541

Query: 268 ERHYTTPYTPQQNGVVERRNRTIVEMARSCMKETNLPKRMWGEAVRHSVYILNRVPTRAL 89
            RH T PYTPQQNGVVERRNRT++ M RS +K   +P  +WGEAVRHS YI+NRV TR+L
Sbjct: 542 NRHLTAPYTPQQNGVVERRNRTLLGMTRSILKHMKMPNYLWGEAVRHSTYIINRVGTRSL 601

Query: 88  TNLTPYEARYKRKPNLSYIRVFGCLAYMK 2
            N TPYE   +RKPN+ ++RVFGC+ Y K
Sbjct: 602 QNQTPYEVFKQRKPNVEHLRVFGCIGYAK 630


>gb|AAN65018.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|108711344|gb|ABF99139.1| retrotransposon protein,
           putative, unclassified [Oryza sativa Japonica Group]
          Length = 1394

 Score =  189 bits (479), Expect = 3e-46
 Identities = 86/149 (57%), Positives = 117/149 (78%)
 Frame = -2

Query: 448 YSRFMWVYFLKSKDEAFKVFKCFRAQVEKSTERKIKVLRTDRGGEFTSKDFKDYCESAGI 269
           ++R+MWV+ +KSKD+A + F  F+   E    R+IK LR+DRGG+F S +F   CESAGI
Sbjct: 498 FTRWMWVFVIKSKDQAVEAFTKFKPLAENVAGRRIKTLRSDRGGKFLSGEFAQVCESAGI 557

Query: 268 ERHYTTPYTPQQNGVVERRNRTIVEMARSCMKETNLPKRMWGEAVRHSVYILNRVPTRAL 89
           +RH T PY+PQQNGVVERRNR+++ MARS +K  ++P R+WGEAVRH+VYILNR+PT+A+
Sbjct: 558 QRHLTAPYSPQQNGVVERRNRSVMVMARSLLKGMSVPGRLWGEAVRHAVYILNRLPTKAM 617

Query: 88  TNLTPYEARYKRKPNLSYIRVFGCLAYMK 2
            N TPYEA   +KP+L+++RVFGC A+ K
Sbjct: 618 GNRTPYEAWTGKKPHLAHLRVFGCTAHAK 646