BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00032332
         (633 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]                 191   1e-46
dbj|BAG31375.1| topoisomerase I [Ophiorrhiza japonica]                190   2e-46
dbj|BAK32960.1| topoisomerase I [Ophiorrhiza pseudofasciculata]       187   1e-45
emb|CAB46363.1| DNA topoisomerase I [Daucus carota]                   186   4e-45
emb|CBI28783.3| unnamed protein product [Vitis vinifera]              184   1e-44

>dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]
          Length = 910

 Score =  191 bits (484), Expect = 1e-46
 Identities = 96/129 (74%), Positives = 103/129 (79%), Gaps = 2/129 (1%)
 Frame = +3

Query: 9    SQMLRXXXXXXXXXXXXXXXXXXXTRVNKGKPPLK--NSDGKPKRNLNPEALQRKIAQTN 182
            +QMLR                   +RV KGKPPLK  N+DGKPKRNLNPE+L++KIAQTN
Sbjct: 782  AQMLRLNEKIEELKAVVEELKSDLSRVKKGKPPLKSKNADGKPKRNLNPESLEKKIAQTN 841

Query: 183  TNIEKMERDKETKEDLKTVALGTSKINYLDPRITVAWCKRHDVPIEKIFNKSLLAKFAWA 362
              IEKMERDKETKEDLKTVALGTSKINYLDPRITVAWCKRH+VPIEKIFNKSLLAKF WA
Sbjct: 842  AKIEKMERDKETKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFTWA 901

Query: 363  MDVDPRFRF 389
            MDVDP FRF
Sbjct: 902  MDVDPSFRF 910


>dbj|BAG31375.1| topoisomerase I [Ophiorrhiza japonica]
          Length = 927

 Score =  190 bits (482), Expect = 2e-46
 Identities = 90/103 (87%), Positives = 96/103 (93%)
 Frame = +3

Query: 81   TRVNKGKPPLKNSDGKPKRNLNPEALQRKIAQTNTNIEKMERDKETKEDLKTVALGTSKI 260
            +RV KGKPP K +DGKPKRNLNPEAL+RK+AQ N  IEKMERDKETKEDLKTVALGTSKI
Sbjct: 825  SRVKKGKPPSKGADGKPKRNLNPEALERKMAQINAKIEKMERDKETKEDLKTVALGTSKI 884

Query: 261  NYLDPRITVAWCKRHDVPIEKIFNKSLLAKFAWAMDVDPRFRF 389
            NYLDPRITVAWCKRH+VPIEKIFNKSLLAKFAW+MDVDP FRF
Sbjct: 885  NYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWSMDVDPSFRF 927


>dbj|BAK32960.1| topoisomerase I [Ophiorrhiza pseudofasciculata]
          Length = 925

 Score =  187 bits (476), Expect = 1e-45
 Identities = 89/103 (86%), Positives = 94/103 (91%)
 Frame = +3

Query: 81   TRVNKGKPPLKNSDGKPKRNLNPEALQRKIAQTNTNIEKMERDKETKEDLKTVALGTSKI 260
            +R  KGKPP K +DGK KRNLNPEAL+RKI QTN  IEKMERDKETKEDLKTVALGTSKI
Sbjct: 823  SRAKKGKPPTKGADGKAKRNLNPEALERKITQTNAKIEKMERDKETKEDLKTVALGTSKI 882

Query: 261  NYLDPRITVAWCKRHDVPIEKIFNKSLLAKFAWAMDVDPRFRF 389
            NYLDPRITVAWCKRH+VPIEKIFNKSLLAKFAW+MDVDP FRF
Sbjct: 883  NYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWSMDVDPSFRF 925


>emb|CAB46363.1| DNA topoisomerase I [Daucus carota]
          Length = 909

 Score =  186 bits (471), Expect = 4e-45
 Identities = 87/103 (84%), Positives = 96/103 (93%)
 Frame = +3

Query: 81   TRVNKGKPPLKNSDGKPKRNLNPEALQRKIAQTNTNIEKMERDKETKEDLKTVALGTSKI 260
            +R  KGKPPLK SDGK KRN+NPEA+++KIAQTN  IEKMERDKETKEDLKTVALGTSKI
Sbjct: 807  SRAKKGKPPLKGSDGKTKRNMNPEAIEKKIAQTNVKIEKMERDKETKEDLKTVALGTSKI 866

Query: 261  NYLDPRITVAWCKRHDVPIEKIFNKSLLAKFAWAMDVDPRFRF 389
            NYLDPRITVAWCKR++VPIEK+FNKSLLAKFAWAMDV+P FRF
Sbjct: 867  NYLDPRITVAWCKRYEVPIEKMFNKSLLAKFAWAMDVEPSFRF 909


>emb|CBI28783.3| unnamed protein product [Vitis vinifera]
          Length = 724

 Score =  184 bits (467), Expect = 1e-44
 Identities = 87/102 (85%), Positives = 94/102 (92%)
 Frame = +3

Query: 84  RVNKGKPPLKNSDGKPKRNLNPEALQRKIAQTNTNIEKMERDKETKEDLKTVALGTSKIN 263
           R  KGKPPLK+SDGKPK+N+ PE L+RKIAQTNT IEKMERD +TKEDLKTVALGTSKIN
Sbjct: 623 RAKKGKPPLKDSDGKPKKNMTPEVLERKIAQTNTKIEKMERDMKTKEDLKTVALGTSKIN 682

Query: 264 YLDPRITVAWCKRHDVPIEKIFNKSLLAKFAWAMDVDPRFRF 389
           YLDPRI+VAWCKR +VPIEKIFNKSLLAKFAWAMDVDP FRF
Sbjct: 683 YLDPRISVAWCKRQEVPIEKIFNKSLLAKFAWAMDVDPSFRF 724