BLASTX nr result

ID: Cnidium21_contig00032158 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00032158
         (301 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis t...    96   2e-18
emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis th...    96   2e-18
gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis tha...    96   2e-18
ref|XP_003622005.1| Heat shock protein [Medicago truncatula] gi|...    94   2e-17
ref|XP_003549005.1| PREDICTED: uncharacterized protein LOC100789...    92   4e-17

>dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1109

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 50/97 (51%), Positives = 65/97 (67%)
 Frame = -2

Query: 300 AFLHGDLHEEVYMSLPLGYIQDPNGPKLVCKLIKSLYGLKQASRCWFSKLAACLLEADYT 121
           AFLHGDL EEVYM LP G+  D   P  VC+L KSLYGLKQA RCWFSKL++ L +  +T
Sbjct: 712 AFLHGDLKEEVYMKLPQGFQCDD--PSKVCRLHKSLYGLKQAPRCWFSKLSSALKQYGFT 769

Query: 120 QSKTDHSMFTYSHDGXXXXXXXXXXXXXISGNNQEAI 10
           QS +D+S+F+Y++DG             ISG+  +A+
Sbjct: 770 QSLSDYSLFSYNNDGVFVHVLVYVDDLIISGSCPDAV 806


>emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis thaliana]
           gi|7269049|emb|CAB79159.1| LTR retrotransposon like
           protein [Arabidopsis thaliana]
          Length = 1109

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 50/97 (51%), Positives = 65/97 (67%)
 Frame = -2

Query: 300 AFLHGDLHEEVYMSLPLGYIQDPNGPKLVCKLIKSLYGLKQASRCWFSKLAACLLEADYT 121
           AFLHGDL EEVYM LP G+  D   P  VC+L KSLYGLKQA RCWFSKL++ L +  +T
Sbjct: 712 AFLHGDLKEEVYMKLPQGFQCDD--PSKVCRLHKSLYGLKQAPRCWFSKLSSALKQYGFT 769

Query: 120 QSKTDHSMFTYSHDGXXXXXXXXXXXXXISGNNQEAI 10
           QS +D+S+F+Y++DG             ISG+  +A+
Sbjct: 770 QSLSDYSLFSYNNDGVFVHVLVYVDDLIISGSCPDAV 806


>gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis thaliana]
          Length = 1468

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 50/97 (51%), Positives = 65/97 (67%)
 Frame = -2

Query: 300  AFLHGDLHEEVYMSLPLGYIQDPNGPKLVCKLIKSLYGLKQASRCWFSKLAACLLEADYT 121
            AFLHGDL EEVYM LP G+  D   P  VC+L KSLYGLKQA RCWFSKL++ L +  +T
Sbjct: 1071 AFLHGDLKEEVYMKLPQGFQCDD--PSKVCRLHKSLYGLKQAPRCWFSKLSSALKQYGFT 1128

Query: 120  QSKTDHSMFTYSHDGXXXXXXXXXXXXXISGNNQEAI 10
            QS +D+S+F+Y++DG             ISG+  +A+
Sbjct: 1129 QSLSDYSLFSYNNDGIFVHVLVYVDDLIISGSCPDAV 1165


>ref|XP_003622005.1| Heat shock protein [Medicago truncatula]
           gi|355497020|gb|AES78223.1| Heat shock protein [Medicago
           truncatula]
          Length = 1120

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 51/99 (51%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
 Frame = -2

Query: 300 AFLHGDLHEEVYMSLPLG--YIQDPNGPKLVCKLIKSLYGLKQASRCWFSKLAACLLEAD 127
           AFLHGDLHEEVYMSLP G  +  D NG   VCKL KS+YG KQASR W+SKL+  L+   
Sbjct: 636 AFLHGDLHEEVYMSLPPGLKFPHDNNGFTKVCKLHKSIYGRKQASRQWYSKLSESLISLG 695

Query: 126 YTQSKTDHSMFTYSHDGXXXXXXXXXXXXXISGNNQEAI 10
           YT S  D+S+FT  HD              ++GNN   I
Sbjct: 696 YTHSIADYSLFTTQHDVHFTALLVYVDDIVLTGNNYSEI 734


>ref|XP_003549005.1| PREDICTED: uncharacterized protein LOC100789964 [Glycine max]
          Length = 2412

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 44/74 (59%), Positives = 52/74 (70%)
 Frame = -2

Query: 300  AFLHGDLHEEVYMSLPLGYIQDPNGPKLVCKLIKSLYGLKQASRCWFSKLAACLLEADYT 121
            AFLHGDL EEVYM LP G++   +    VCKL KSLYGLKQASR WFSKL+  L+   Y+
Sbjct: 1288 AFLHGDLDEEVYMDLPPGFLPPGSSSNKVCKLHKSLYGLKQASRQWFSKLSTALISLGYS 1347

Query: 120  QSKTDHSMFTYSHD 79
             S  DHS+FT  H+
Sbjct: 1348 PSSADHSLFTKLHN 1361


Top