BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00032076
         (552 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAZ08459.1| RNA polymerase II second largest subunit [Astilbe...   284   7e-75
gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhodode...   283   1e-74
gb|AAS86834.1| RNA polymerase II second largest subunit, partial...   283   1e-74
ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, puta...   283   2e-74
ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II su...   282   2e-74

>gb|AAZ08459.1| RNA polymerase II second largest subunit [Astilbe sp. Yoshikawa
           s.n.]
          Length = 951

 Score =  284 bits (726), Expect = 7e-75
 Identities = 138/183 (75%), Positives = 151/183 (82%)
 Frame = +3

Query: 3   MMCPAETPEGQACGLVKNLALMVYVTVGSVASPILEFLEEWGTENFEEITPAIVSRATKI 182
           MMCPAETPEGQACGLVKNLALMVY+TVGS A PILEFLEEWGTENFEEI+PA++  ATKI
Sbjct: 407 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPEATKI 466

Query: 183 FVNGCWVGIHRDPASXXXXXXXXXXXXEVYNEVGVVQEFYLNELRLNTDYGRCSRPLFIV 362
           FVNGCWVGIHRDP              +V  EVGVV++  L ELR+ TDYGRCSRPLFIV
Sbjct: 467 FVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 526

Query: 363 EKQRLLIKKKDIETLQQKEGSEDGVWHDLIGKGFIEYIDTEEEEATMISMTINDLRNARE 542
           EKQRLLIKKKDI+ LQQ+E  EDG WHDL+ KGFIEY+DTEEEE TMISMTINDL +AR 
Sbjct: 527 EKQRLLIKKKDIQALQQRETPEDGGWHDLVAKGFIEYVDTEEEETTMISMTINDLVSARL 586

Query: 543 NPE 551
           NPE
Sbjct: 587 NPE 589


>gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
          Length = 1191

 Score =  283 bits (725), Expect = 1e-74
 Identities = 138/183 (75%), Positives = 152/183 (83%)
 Frame = +3

Query: 3    MMCPAETPEGQACGLVKNLALMVYVTVGSVASPILEFLEEWGTENFEEITPAIVSRATKI 182
            MMCPAETPEGQACGLVKNLALMVY+TVGS A PILEFLEEWGTENFEEI+PA++ +ATKI
Sbjct: 511  MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 570

Query: 183  FVNGCWVGIHRDPASXXXXXXXXXXXXEVYNEVGVVQEFYLNELRLNTDYGRCSRPLFIV 362
            FVNGCWVGIHRDP              +V  EVGVV++  L ELR+ TDYGRCSRPLFIV
Sbjct: 571  FVNGCWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 630

Query: 363  EKQRLLIKKKDIETLQQKEGSEDGVWHDLIGKGFIEYIDTEEEEATMISMTINDLRNARE 542
            EKQRLLIK+KDI+ LQQ+E  EDG WHDL+ KGFIEYIDTEEEE TMISMTINDL +AR 
Sbjct: 631  EKQRLLIKRKDIQALQQRETPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVSARL 690

Query: 543  NPE 551
            NPE
Sbjct: 691  NPE 693


>gb|AAS86834.1| RNA polymerase II second largest subunit, partial [Camellia
           japonica]
          Length = 559

 Score =  283 bits (724), Expect = 1e-74
 Identities = 138/183 (75%), Positives = 152/183 (83%)
 Frame = +3

Query: 3   MMCPAETPEGQACGLVKNLALMVYVTVGSVASPILEFLEEWGTENFEEITPAIVSRATKI 182
           MMCPAETPEGQACGLVKNLALMVY+TVGS A PILEFLEEWGTENFEEI+PA++ +ATKI
Sbjct: 15  MMCPAETPEGQACGLVKNLALMVYITVGSXAYPILEFLEEWGTENFEEISPAVIPQATKI 74

Query: 183 FVNGCWVGIHRDPASXXXXXXXXXXXXEVYNEVGVVQEFYLNELRLNTDYGRCSRPLFIV 362
           FVNGCWVGIHRDP              +V  EVGVV++  L ELR+ TDYGRCSRPLFIV
Sbjct: 75  FVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 134

Query: 363 EKQRLLIKKKDIETLQQKEGSEDGVWHDLIGKGFIEYIDTEEEEATMISMTINDLRNARE 542
           EKQRLLIKKKDI++LQQ+E  EDG WHDL+ KG+IEYIDTEEEE TMISMTINDL  AR 
Sbjct: 135 EKQRLLIKKKDIQSLQQRETPEDGGWHDLVAKGYIEYIDTEEEETTMISMTINDLITARL 194

Query: 543 NPE 551
           NPE
Sbjct: 195 NPE 197


>ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
            gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase
            II subunit, putative [Ricinus communis]
          Length = 1194

 Score =  283 bits (723), Expect = 2e-74
 Identities = 138/183 (75%), Positives = 151/183 (82%)
 Frame = +3

Query: 3    MMCPAETPEGQACGLVKNLALMVYVTVGSVASPILEFLEEWGTENFEEITPAIVSRATKI 182
            MMCPAETPEGQACGLVKNLALMVY+TVGS A PILEFLEEWGTENFEEI+PA++ +ATKI
Sbjct: 514  MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 573

Query: 183  FVNGCWVGIHRDPASXXXXXXXXXXXXEVYNEVGVVQEFYLNELRLNTDYGRCSRPLFIV 362
            FVNGCWVGIHRDP              +V  EVGVV++  L ELR+ TDYGRCSRPLFIV
Sbjct: 574  FVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 633

Query: 363  EKQRLLIKKKDIETLQQKEGSEDGVWHDLIGKGFIEYIDTEEEEATMISMTINDLRNARE 542
            EKQRLLIKKKDI  LQQ+E SE+G WHDL+ KGFIEYIDTEEEE TMISMTI+DL  AR 
Sbjct: 634  EKQRLLIKKKDIHALQQRESSEEGGWHDLVAKGFIEYIDTEEEETTMISMTIHDLVQARI 693

Query: 543  NPE 551
            NPE
Sbjct: 694  NPE 696


>ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
            max]
          Length = 1193

 Score =  282 bits (722), Expect = 2e-74
 Identities = 137/183 (74%), Positives = 150/183 (81%)
 Frame = +3

Query: 3    MMCPAETPEGQACGLVKNLALMVYVTVGSVASPILEFLEEWGTENFEEITPAIVSRATKI 182
            MMCPAETPEGQACGLVKNLALMVY+TVGS A PILEFLEEWGTENFEEI+PA++ +ATKI
Sbjct: 514  MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 573

Query: 183  FVNGCWVGIHRDPASXXXXXXXXXXXXEVYNEVGVVQEFYLNELRLNTDYGRCSRPLFIV 362
            FVNGCW+GIHRDP              +V  EVGVV++  L ELR+ TDYGRCSRPLFIV
Sbjct: 574  FVNGCWMGIHRDPDMLVRTLRKLRRRVDVNTEVGVVRDIILKELRIYTDYGRCSRPLFIV 633

Query: 363  EKQRLLIKKKDIETLQQKEGSEDGVWHDLIGKGFIEYIDTEEEEATMISMTINDLRNARE 542
            +KQRLLIKKKDI  LQQ+E  EDG WHDL+ KGFIEYIDTEEEE TMISMTINDL  AR 
Sbjct: 634  DKQRLLIKKKDIHALQQRESPEDGGWHDLVSKGFIEYIDTEEEETTMISMTINDLVQARI 693

Query: 543  NPE 551
            NPE
Sbjct: 694  NPE 696