BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00032017
         (720 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAY99339.1| pol-polyprotein [Silene latifolia]                     159   5e-37
gb|AAX94963.1| retrotransposon protein, putative, Ty3-gypsy sub-...   149   4e-34
dbj|BAK61840.1| gag-pol polyprotein [Citrus unshiu]                   149   6e-34
emb|CAE76039.1| B1292H11.25 [Oryza sativa Japonica Group]             148   1e-33
gb|AAX96740.1| retrotransposon protein, putative, Ty3-gypsy sub-...   148   1e-33

>gb|AAY99339.1| pol-polyprotein [Silene latifolia]
          Length = 1307

 Score =  159 bits (402), Expect = 5e-37
 Identities = 78/168 (46%), Positives = 114/168 (67%)
 Frame = +2

Query: 125 STMGPAVTPATETEKIELIPGNGTKRVTIGTGLDSIFKDGLTKLLREYADIFAWSPKDMP 304
           ST   ++    ETE++E+ PG   + VT+G GL+  F+  L  LLR+  D+FA+S  +MP
Sbjct: 235 STNNVSMVEGAETEQVEIDPG---RTVTVGVGLEPKFRADLLDLLRKNKDVFAYSAAEMP 291

Query: 305 ELEESIAIHKLSVRRDAQPKVQKRRNFAPDRQRAIDEEIDRVLDADLICEVTYPKRVINV 484
            +   + +HKL+V  +A+P  QK RN + ++  AI  E+D++L+A  I   TYP+ + NV
Sbjct: 292 GVSREVIVHKLNVLSNARPVKQKMRNSSAEKDDAIKAEVDKLLEAGFIMPCTYPEWLANV 351

Query: 485 VLVKKANGKWRVCVDYTDLNTTCPKDPYPLPSIDQLIDATADHLMLSV 628
           V+VKK++G WR+CVD+T+LN  CPKD YPLP ID LIDATA + MLS+
Sbjct: 352 VMVKKSSGGWRMCVDFTNLNKACPKDCYPLPRIDSLIDATASYTMLSL 399


>gb|AAX94963.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
           sativa Japonica Group] gi|77549877|gb|ABA92674.1|
           retrotransposon protein, putative, Ty3-gypsy subclass
           [Oryza sativa Japonica Group]
          Length = 759

 Score =  149 bits (377), Expect = 4e-34
 Identities = 73/135 (54%), Positives = 97/135 (71%), Gaps = 2/135 (1%)
 Frame = +2

Query: 245 LTKLLREYADIFAWSPKDMPELEESIAIHKLSVRRDAQPKVQKRRNFAPDRQRAIDEEID 424
           L   LR+ AD+FAW P +MP + + +  HKL VR DA+P  QK + FAPDR++AI EE+D
Sbjct: 163 LITFLRDNADVFAWQPSNMPGVPKEVIEHKLMVRPDAKPVKQKLQRFAPDRKQAIREELD 222

Query: 425 RVLDADLICEVTYPKRVINVVLVKKANGKWRVCVDYTDLNTTCPKDPYPLPSIDQLIDAT 604
           ++L A  I EV +P+ + N V+V+KANGKWR+CVD+TDLN  CPKD +PLP IDQL+D+T
Sbjct: 223 KLLKAGFIREVLHPEWLANPVMVRKANGKWRMCVDFTDLNKACPKDHFPLPQIDQLVDST 282

Query: 605 ADHLMLSV--RYSLY 643
           A   +LS    YS Y
Sbjct: 283 AGCELLSFLDAYSSY 297


>dbj|BAK61840.1| gag-pol polyprotein [Citrus unshiu]
          Length = 1542

 Score =  149 bits (376), Expect = 6e-34
 Identities = 74/159 (46%), Positives = 106/159 (66%)
 Frame = +2

Query: 149  PATETEKIELIPGNGTKRVTIGTGLDSIFKDGLTKLLREYADIFAWSPKDMPELEESIAI 328
            P  + +++ +   N ++ V IG+GL    K  L K L+ YADIFAWS +DMP ++  IA 
Sbjct: 712  PVEKLDEVFVNKSNPSRMVKIGSGLGETIKGELVKYLQSYADIFAWSHEDMPRIDHGIAY 771

Query: 329  HKLSVRRDAQPKVQKRRNFAPDRQRAIDEEIDRVLDADLICEVTYPKRVINVVLVKKANG 508
            HKL++R+ A P  QKRR F  +R  AI+ E++++L A  I +  Y + + NV+LVKKA+ 
Sbjct: 772  HKLAIRKGAMPVRQKRRCFNQERYEAINAEVEQLLKAGFIRKTKYSEWISNVILVKKAS- 830

Query: 509  KWRVCVDYTDLNTTCPKDPYPLPSIDQLIDATADHLMLS 625
              R+CVD+TDLN  CPKD +PL  IDQL+D+TA H +LS
Sbjct: 831  --RMCVDFTDLNKACPKDSFPLQKIDQLVDSTAGHSLLS 867


>emb|CAE76039.1| B1292H11.25 [Oryza sativa Japonica Group]
          Length = 1610

 Score =  148 bits (374), Expect = 1e-33
 Identities = 71/127 (55%), Positives = 91/127 (71%)
 Frame = +2

Query: 245  LTKLLREYADIFAWSPKDMPELEESIAIHKLSVRRDAQPKVQKRRNFAPDRQRAIDEEID 424
            L   LR+ AD+FAW P DMP +   +  HKL VR DA+P  QK R FAPDR++AI EE+D
Sbjct: 685  LITFLRDDADVFAWQPSDMPGVPREVIEHKLMVRPDAKPVKQKLRRFAPDRKQAIREELD 744

Query: 425  RVLDADLICEVTYPKRVINVVLVKKANGKWRVCVDYTDLNTTCPKDPYPLPSIDQLIDAT 604
            ++L A  I EV +P+ + N  +V KANGKWR+CVD+TDLN  CPKD +PLP IDQL+D+T
Sbjct: 745  KLLKAGFIREVLHPEWLANPDMVHKANGKWRICVDFTDLNKACPKDHFPLPRIDQLVDST 804

Query: 605  ADHLMLS 625
            A   +LS
Sbjct: 805  AGCELLS 811


>gb|AAX96740.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
            Japonica Group] gi|77549145|gb|ABA91942.1|
            retrotransposon protein, putative, Ty3-gypsy subclass
            [Oryza sativa Japonica Group]
          Length = 1372

 Score =  148 bits (373), Expect = 1e-33
 Identities = 70/127 (55%), Positives = 92/127 (72%)
 Frame = +2

Query: 245  LTKLLREYADIFAWSPKDMPELEESIAIHKLSVRRDAQPKVQKRRNFAPDRQRAIDEEID 424
            L   LR+ AD+FAW P DMP +   +  HKL VR DA+P  QK R FAPD+++AI EE+D
Sbjct: 697  LITFLRDNADVFAWQPSDMPRVPREVIEHKLMVRPDAKPVKQKLRRFAPDQKQAIREELD 756

Query: 425  RVLDADLICEVTYPKRVINVVLVKKANGKWRVCVDYTDLNTTCPKDPYPLPSIDQLIDAT 604
            ++L A  I EV +P+ + N V+V+KAN KWR+CVD+TDLN  CPKD +PLP IDQL+D+T
Sbjct: 757  KLLKAGFIREVLHPEWLANPVMVRKANEKWRMCVDFTDLNKACPKDHFPLPRIDQLVDST 816

Query: 605  ADHLMLS 625
            A   +LS
Sbjct: 817  AGCELLS 823