BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00031978
         (574 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002863185.1| predicted protein [Arabidopsis lyrata subsp....   106   3e-21
emb|CAB45506.1| putative protein [Arabidopsis thaliana] gi|72680...   101   1e-19
ref|NP_193043.2| RNA-binding CRS1 / YhbY (CRM) domain protein [A...   100   2e-19
ref|XP_002328988.1| predicted protein [Populus trichocarpa] gi|2...    97   2e-18
ref|XP_004155504.1| PREDICTED: uncharacterized CRM domain-contai...    96   4e-18

>ref|XP_002863185.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297309019|gb|EFH39444.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 343

 Score =  106 bits (264), Expect = 3e-21
 Identities = 61/110 (55%), Positives = 72/110 (65%), Gaps = 3/110 (2%)
 Frame = +2

Query: 254 PLSGAPCIQCQVRVLSAQRSIFFSFGDLFPRLHVRHFSNSIVELKTDDDVVKFSFGTQPA 433
           P    PC      VL AQR   F++   F R   R+ SNS VEL+TDD+VV+F+F     
Sbjct: 42  PFLQVPCKSASFDVLQAQRRNLFAYDGFFSR---RYLSNSTVELRTDDNVVRFAFNNVTG 98

Query: 434 NGRI---RRKEKKTPRQVKMSKRAKLNELRFYRLKAKKKMNSPNPEVRIR 574
           +G      RKEKK  R  KMS++AK+NELRFYRLKAKKKMNSPNPEVRIR
Sbjct: 99  SGNNVVPTRKEKKWKR-AKMSRKAKVNELRFYRLKAKKKMNSPNPEVRIR 147


>emb|CAB45506.1| putative protein [Arabidopsis thaliana] gi|7268009|emb|CAB78349.1|
           putative protein [Arabidopsis thaliana]
          Length = 332

 Score =  101 bits (251), Expect = 1e-19
 Identities = 60/132 (45%), Positives = 80/132 (60%), Gaps = 3/132 (2%)
 Frame = +2

Query: 188 RSTSFARTYFPFSKQRRCMPDVPLSGAPCIQCQVRVLSAQRSIFFSFGDLFPRLHVRHFS 367
           +++ F   ++  S     +   P     C      V  AQR   F++  LF R   R+ S
Sbjct: 9   KTSRFFLLHYQSSNYSSYVKSRPFLQVQCKSASFDVSQAQRWNLFAYDGLFSR---RYLS 65

Query: 368 NSIVELKTDDDVVKFSFGTQPANGRI---RRKEKKTPRQVKMSKRAKLNELRFYRLKAKK 538
           NS +EL+TDD+VV+F+F    ++G      RKEKK  R  K+S++AK+NELRFYRLKAKK
Sbjct: 66  NSTIELRTDDNVVRFAFNNVSSSGNNVVPTRKEKKWKR-AKLSRKAKVNELRFYRLKAKK 124

Query: 539 KMNSPNPEVRIR 574
           KMNSPNPEVRIR
Sbjct: 125 KMNSPNPEVRIR 136


>ref|NP_193043.2| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
           gi|51968644|dbj|BAD43014.1| putative protein
           [Arabidopsis thaliana] gi|51971084|dbj|BAD44234.1|
           putative protein [Arabidopsis thaliana]
           gi|51971893|dbj|BAD44611.1| putative protein
           [Arabidopsis thaliana] gi|63003852|gb|AAY25455.1|
           At4g13070 [Arabidopsis thaliana]
           gi|115646846|gb|ABJ17138.1| At4g13070 [Arabidopsis
           thaliana] gi|332657826|gb|AEE83226.1| RNA-binding CRS1 /
           YhbY (CRM) domain protein [Arabidopsis thaliana]
          Length = 343

 Score =  100 bits (249), Expect = 2e-19
 Identities = 58/110 (52%), Positives = 72/110 (65%), Gaps = 3/110 (2%)
 Frame = +2

Query: 254 PLSGAPCIQCQVRVLSAQRSIFFSFGDLFPRLHVRHFSNSIVELKTDDDVVKFSFGTQPA 433
           P     C      V  AQR   F++  LF R   R+ SNS +EL+TDD+VV+F+F    +
Sbjct: 42  PFLQVQCKSASFDVSQAQRWNLFAYDGLFSR---RYLSNSTIELRTDDNVVRFAFNNVSS 98

Query: 434 NGRI---RRKEKKTPRQVKMSKRAKLNELRFYRLKAKKKMNSPNPEVRIR 574
           +G      RKEKK  R  K+S++AK+NELRFYRLKAKKKMNSPNPEVRIR
Sbjct: 99  SGNNVVPTRKEKKWKR-AKLSRKAKVNELRFYRLKAKKKMNSPNPEVRIR 147


>ref|XP_002328988.1| predicted protein [Populus trichocarpa] gi|222839222|gb|EEE77573.1|
           predicted protein [Populus trichocarpa]
          Length = 342

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 47/73 (64%), Positives = 57/73 (78%)
 Frame = +2

Query: 356 RHFSNSIVELKTDDDVVKFSFGTQPANGRIRRKEKKTPRQVKMSKRAKLNELRFYRLKAK 535
           RH S + +EL+TD+D V+FS      + + ++  KK PR VKMSK+AKLNELRFYRLKAK
Sbjct: 72  RHMSTASLELRTDNDFVRFSITKDGYSAKEKKSMKKVPRYVKMSKKAKLNELRFYRLKAK 131

Query: 536 KKMNSPNPEVRIR 574
           KKMNSPNPEVRIR
Sbjct: 132 KKMNSPNPEVRIR 144


>ref|XP_004155504.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
           chloroplastic-like [Cucumis sativus]
          Length = 290

 Score = 95.9 bits (237), Expect = 4e-18
 Identities = 49/74 (66%), Positives = 58/74 (78%)
 Frame = +2

Query: 353 VRHFSNSIVELKTDDDVVKFSFGTQPANGRIRRKEKKTPRQVKMSKRAKLNELRFYRLKA 532
           VRHFSN++VELKTD++ V+FSFG   +    R K+K    + KMSK+AKLNELRFYRLKA
Sbjct: 30  VRHFSNAVVELKTDNNTVRFSFGCPSSTNGSRLKQKVA--KTKMSKKAKLNELRFYRLKA 87

Query: 533 KKKMNSPNPEVRIR 574
           KKK  SPNPEVRIR
Sbjct: 88  KKKKTSPNPEVRIR 101