BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00031310
         (304 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABU85219.1| RNA polymerase beta subunit [Anethum graveolens]       177   8e-43
ref|YP_004222636.1| RNA polymerase beta' subunit [Anthriscus cer...   176   2e-42
gb|ADO13881.1| RNA polymerase beta subunit [Sanicula europaea]        173   1e-41
gb|ABV65700.1| RNA polymerase beta'' subunit (chloroplast) [Berb...   170   1e-40
gb|ABD93856.1| RNA polymerase beta chain [Berberidopsis beckleri]     170   1e-40

>gb|ABU85219.1| RNA polymerase beta subunit [Anethum graveolens]
          Length = 1386

 Score =  177 bits (449), Expect = 8e-43
 Identities = 88/89 (98%), Positives = 88/89 (98%)
 Frame = +2

Query: 2   LSGISIEIPINGIFRRNSILAFFDDPRYRRKSSGITKYGTIEVYPIAKKEDLIEYRGVKE 181
           LSGISIEIPINGIFRRNSILAFFDDPRYRRKSSGITKYGTIEVYPIAKKEDLIEYRGVKE
Sbjct: 593 LSGISIEIPINGIFRRNSILAFFDDPRYRRKSSGITKYGTIEVYPIAKKEDLIEYRGVKE 652

Query: 182 FRPKYQIKVDRFFFIPEEVHILPGSSSIM 268
           FRPKYQIKVDRFFFIPEEVHILP SSSIM
Sbjct: 653 FRPKYQIKVDRFFFIPEEVHILPKSSSIM 681


>ref|YP_004222636.1| RNA polymerase beta' subunit [Anthriscus cerefolium]
           gi|289645565|gb|ADD13628.1| RNA polymerase beta' subunit
           [Anthriscus cerefolium]
          Length = 1390

 Score =  176 bits (446), Expect = 2e-42
 Identities = 87/89 (97%), Positives = 88/89 (98%)
 Frame = +2

Query: 2   LSGISIEIPINGIFRRNSILAFFDDPRYRRKSSGITKYGTIEVYPIAKKEDLIEYRGVKE 181
           LSGISIEIP NGIFRRNSILAFFDDPRYRRKSSGITKYGTIEVYPIAKKEDLIEYRGVKE
Sbjct: 593 LSGISIEIPRNGIFRRNSILAFFDDPRYRRKSSGITKYGTIEVYPIAKKEDLIEYRGVKE 652

Query: 182 FRPKYQIKVDRFFFIPEEVHILPGSSSIM 268
           FRPKYQIKVD+FFFIPEEVHILPGSSSIM
Sbjct: 653 FRPKYQIKVDQFFFIPEEVHILPGSSSIM 681


>gb|ADO13881.1| RNA polymerase beta subunit [Sanicula europaea]
          Length = 1037

 Score =  173 bits (439), Expect = 1e-41
 Identities = 85/89 (95%), Positives = 87/89 (97%)
 Frame = +2

Query: 2   LSGISIEIPINGIFRRNSILAFFDDPRYRRKSSGITKYGTIEVYPIAKKEDLIEYRGVKE 181
           LSGISIEIPINGIFRRNSILA+FDDPRYRRKSSGITKYGTIEVY I KKEDLIEYRGVKE
Sbjct: 555 LSGISIEIPINGIFRRNSILAYFDDPRYRRKSSGITKYGTIEVYSIVKKEDLIEYRGVKE 614

Query: 182 FRPKYQIKVDRFFFIPEEVHILPGSSSIM 268
           FRPKYQ+KVDRFFFIPEEVHILPGSSSIM
Sbjct: 615 FRPKYQMKVDRFFFIPEEVHILPGSSSIM 643


>gb|ABV65700.1| RNA polymerase beta'' subunit (chloroplast) [Berberidopsis
           corallina]
          Length = 1389

 Score =  170 bits (430), Expect = 1e-40
 Identities = 83/88 (94%), Positives = 86/88 (97%)
 Frame = +2

Query: 5   SGISIEIPINGIFRRNSILAFFDDPRYRRKSSGITKYGTIEVYPIAKKEDLIEYRGVKEF 184
           SGISIEIPINGIFRRNSILA+FDDPRYRRKSSGITKYGTIEV+ I KKEDLIEYRGVKEF
Sbjct: 597 SGISIEIPINGIFRRNSILAYFDDPRYRRKSSGITKYGTIEVHSIVKKEDLIEYRGVKEF 656

Query: 185 RPKYQIKVDRFFFIPEEVHILPGSSSIM 268
           RPKYQ+KVDRFFFIPEEVHILPGSSSIM
Sbjct: 657 RPKYQMKVDRFFFIPEEVHILPGSSSIM 684


>gb|ABD93856.1| RNA polymerase beta chain [Berberidopsis beckleri]
          Length = 829

 Score =  170 bits (430), Expect = 1e-40
 Identities = 83/88 (94%), Positives = 86/88 (97%)
 Frame = +2

Query: 5   SGISIEIPINGIFRRNSILAFFDDPRYRRKSSGITKYGTIEVYPIAKKEDLIEYRGVKEF 184
           SGISIEIPINGIFRRNSILA+FDDPRYRRKSSGITKYGTIEV+ I KKEDLIEYRGVKEF
Sbjct: 114 SGISIEIPINGIFRRNSILAYFDDPRYRRKSSGITKYGTIEVHSIVKKEDLIEYRGVKEF 173

Query: 185 RPKYQIKVDRFFFIPEEVHILPGSSSIM 268
           RPKYQ+KVDRFFFIPEEVHILPGSSSIM
Sbjct: 174 RPKYQMKVDRFFFIPEEVHILPGSSSIM 201