BLASTX nr result

ID: Cnidium21_contig00031250 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00031250
         (343 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331674.1| f-box family protein [Populus trichocarpa] g...    60   2e-07
ref|XP_004159645.1| PREDICTED: F-box protein CPR30-like [Cucumis...    55   8e-06
ref|XP_004147498.1| PREDICTED: F-box protein CPR30-like [Cucumis...    55   8e-06

>ref|XP_002331674.1| f-box family protein [Populus trichocarpa]
           gi|222874093|gb|EEF11224.1| f-box family protein
           [Populus trichocarpa]
          Length = 441

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
 Frame = +3

Query: 9   VSKTWYSLIVNPNFICEQIQRSISCGDEYAVLIVPSHVNTQNIIPLISLVSAETGIVYDN 188
           V K+WY++I +PNFI + ++   S  D+   L+V   V     +  + L+  ET  V   
Sbjct: 65  VCKSWYAIITSPNFISKHLRNYYSKSDDSDCLLVQYCVTQAGELESLELLLDETPKVLSY 124

Query: 189 YEI---PFHTNTKFLKLVGSISGIFCLSDQFPDYLCFWNPCVRKFKCLP 326
             +   PFH+      L G   GIF +   + D+  FWNP V +FK LP
Sbjct: 125 ASLGNMPFHSPF----LCGPCDGIFYMYRDYYDFRAFWNPAVNEFKFLP 169


>ref|XP_004159645.1| PREDICTED: F-box protein CPR30-like [Cucumis sativus]
          Length = 383

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
 Frame = +3

Query: 9   VSKTWYSLIVNPNFICEQIQRSISCGDEYAVLIVPSHV-NTQNIIPLISL-VSAETGIVY 182
           V K+WY+L  +P F  +    S+         +V  H  N +NI  L  L +S    +  
Sbjct: 30  VRKSWYALFNDPKFKAKHFSTSLQHKHILLKRLVTKHSGNKENIFSLFKLPLSIHPSLSL 89

Query: 183 DNYEIPFHTNTKFLKLVGSISGIFCLSDQFPD-YLCFWNPCVRKFKCLPSS 332
            + ++PFH + +F ++ G   G+ CL+D   D +LC  NP  R+F  LP S
Sbjct: 90  SDIDLPFHEDFRFFEIRGHSHGLLCLTDLRKDIFLC--NPSTREFHKLPPS 138


>ref|XP_004147498.1| PREDICTED: F-box protein CPR30-like [Cucumis sativus]
          Length = 376

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
 Frame = +3

Query: 9   VSKTWYSLIVNPNFICEQIQRSISCGDEYAVLIVPSHV-NTQNIIPLISL-VSAETGIVY 182
           V K+WY+L  +P F  +    S+         +V  H  N +NI  L  L +S    +  
Sbjct: 30  VRKSWYALFNDPKFKAKHFSTSLQHKHILLKRLVTKHSGNKENIFSLFKLPLSIHPSLSL 89

Query: 183 DNYEIPFHTNTKFLKLVGSISGIFCLSDQFPD-YLCFWNPCVRKFKCLPSS 332
            + ++PFH + +F ++ G   G+ CL+D   D +LC  NP  R+F  LP S
Sbjct: 90  SDIDLPFHEDFRFFEIRGHSHGLLCLTDLRKDIFLC--NPSTREFHKLPPS 138


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