BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00030846
         (338 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002308773.1| predicted protein [Populus trichocarpa] gi|2...   124   8e-27
ref|XP_002883344.1| pentatricopeptide repeat-containing protein ...   113   2e-23
ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containi...   112   3e-23
emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]   112   3e-23
ref|NP_188854.1| pentatricopeptide repeat-containing protein [Ar...   112   3e-23

>ref|XP_002308773.1| predicted protein [Populus trichocarpa] gi|222854749|gb|EEE92296.1|
           predicted protein [Populus trichocarpa]
          Length = 465

 Score =  124 bits (311), Expect = 8e-27
 Identities = 69/114 (60%), Positives = 85/114 (74%), Gaps = 6/114 (5%)
 Frame = +3

Query: 15  DPYTYSSTLKACAETRQLRIGRAVHCHILRSRCVYRNPPSRIVCNSLLNMYVSCCSCYGS 194
           D YTYSSTLKACAETR L+IGRA+HCH++  RC+  + PSRIV NSLLNMY SC S  G 
Sbjct: 109 DSYTYSSTLKACAETRSLKIGRAIHCHLI--RCL--SNPSRIVYNSLLNMYSSCLSNVGC 164

Query: 195 ------SRYDSLVCNVFDTIRKKQNVVAWNIIISWYVKRERFFEAFRHFVMLIK 338
                 S+YD LV  VFDT+RK+ +VVAWN ++SWYVK ER+ EA R F +++K
Sbjct: 165 LSYLDYSKYD-LVHKVFDTMRKR-DVVAWNTMVSWYVKTERYVEAIRLFRLVMK 216


>ref|XP_002883344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297329184|gb|EFH59603.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 824

 Score =  113 bits (282), Expect = 2e-23
 Identities = 62/112 (55%), Positives = 80/112 (71%), Gaps = 4/112 (3%)
 Frame = +3

Query: 15  DPYTYSSTLKACAETRQLRIGRAVHCHILRSRCVYRNPPSRIVCNSLLNMYVSCCSCYGS 194
           D YTYSSTLKACAET+ L+ G+AVHCH++  RC+  +  SR+V NSL+NMYVSC +  GS
Sbjct: 106 DAYTYSSTLKACAETKNLKAGKAVHCHLI--RCLQNS--SRVVHNSLMNMYVSCLNAPGS 161

Query: 195 S----RYDSLVCNVFDTIRKKQNVVAWNIIISWYVKRERFFEAFRHFVMLIK 338
                 YD +V  VFD +R+K NVVAWN +ISWYVK  R  EA R F ++++
Sbjct: 162 ELDCFEYD-VVRKVFDNMRRK-NVVAWNTLISWYVKTGRNAEACRQFAIMMR 211


>ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic [Vitis vinifera]
          Length = 825

 Score =  112 bits (280), Expect = 3e-23
 Identities = 62/114 (54%), Positives = 79/114 (69%), Gaps = 6/114 (5%)
 Frame = +3

Query: 15  DPYTYSSTLKACAETRQLRIGRAVHCHILRSRCVYRNPPSRIVCNSLLNMYVSCCS--CY 188
           D YT+SSTLKACA+ R L++G+A+HCH+LRS        SRIV NSLLNMY +C +   Y
Sbjct: 103 DSYTFSSTLKACAQARSLKLGKALHCHVLRSHF----GSSRIVYNSLLNMYSTCLTEVPY 158

Query: 189 GSSRYD----SLVCNVFDTIRKKQNVVAWNIIISWYVKRERFFEAFRHFVMLIK 338
             + YD     LV  VFDT+RK+ NVVAWN +ISWYVK ER  EAF+ F  +++
Sbjct: 159 LGTAYDFNNCDLVRRVFDTMRKR-NVVAWNTMISWYVKTERLIEAFKMFRTMMR 211


>emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
          Length = 825

 Score =  112 bits (280), Expect = 3e-23
 Identities = 62/114 (54%), Positives = 79/114 (69%), Gaps = 6/114 (5%)
 Frame = +3

Query: 15  DPYTYSSTLKACAETRQLRIGRAVHCHILRSRCVYRNPPSRIVCNSLLNMYVSCCS--CY 188
           D YT+SSTLKACA+ R L++G+A+HCH+LRS        SRIV NSLLNMY +C +   Y
Sbjct: 103 DSYTFSSTLKACAQARSLKLGKALHCHVLRSHF----GSSRIVYNSLLNMYSTCLTEVPY 158

Query: 189 GSSRYD----SLVCNVFDTIRKKQNVVAWNIIISWYVKRERFFEAFRHFVMLIK 338
             + YD     LV  VFDT+RK+ NVVAWN +ISWYVK ER  EAF+ F  +++
Sbjct: 159 LGTAYDFNNCDLVRRVFDTMRKR-NVVAWNTMISWYVKTERLIEAFKMFRTMMR 211


>ref|NP_188854.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75273371|sp|Q9LIE7.1|PP246_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g22150, chloroplastic; Flags: Precursor
           gi|11994734|dbj|BAB03063.1| selenium-binding
           protein-like [Arabidopsis thaliana]
           gi|110739449|dbj|BAF01634.1| hypothetical protein
           [Arabidopsis thaliana] gi|332643073|gb|AEE76594.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 820

 Score =  112 bits (280), Expect = 3e-23
 Identities = 60/108 (55%), Positives = 78/108 (72%)
 Frame = +3

Query: 15  DPYTYSSTLKACAETRQLRIGRAVHCHILRSRCVYRNPPSRIVCNSLLNMYVSCCSCYGS 194
           D YTYSSTLKACAET+ L+ G+AVHCH++  RC+  +  SR+V NSL+NMYVSC +    
Sbjct: 106 DAYTYSSTLKACAETKNLKAGKAVHCHLI--RCLQNS--SRVVHNSLMNMYVSCLNAPDC 161

Query: 195 SRYDSLVCNVFDTIRKKQNVVAWNIIISWYVKRERFFEAFRHFVMLIK 338
             YD +V  VFD +R+K NVVAWN +ISWYVK  R  EA R F ++++
Sbjct: 162 FEYD-VVRKVFDNMRRK-NVVAWNTLISWYVKTGRNAEACRQFGIMMR 207