BLASTX nr result
ID: Cnidium21_contig00030829
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00030829
(553 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAU10736.1| putative polyprotein [Oryza sativa Japonica Group... 160 1e-37
gb|ABA95029.1| retrotransposon protein, putative, Ty3-gypsy subc... 160 2e-37
gb|AAL82662.1|AC092387_10 retrotransposon protein, putative, Ty3... 159 2e-37
gb|ABA95253.1| retrotransposon protein, putative, Ty3-gypsy subc... 159 3e-37
gb|ABA94908.1| retrotransposon protein, putative, Ty3-gypsy subc... 159 3e-37
>gb|AAU10736.1| putative polyprotein [Oryza sativa Japonica Group]
gi|52353374|gb|AAU43942.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1995
Score = 160 bits (405), Expect = 1e-37
Identities = 78/190 (41%), Positives = 123/190 (64%), Gaps = 7/190 (3%)
Frame = +1
Query: 1 GIEADPAQIKVILDIEDPKTLKDIQKLTGCIVALRKFIPQSSKQCLPLFQAIKNASKSSQ 180
GI+A+P ++ IL+++ P T KD+QKLTGC+ AL +F+ + ++ +P F+ +K K+
Sbjct: 1199 GIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLK---KTDD 1255
Query: 181 MDWNDQSRKSLDELKILLTSPPILTRALPQEPLRVYLSASDNSVAVILIRLVDNSETHV- 357
W +++K+L++ K LLT PP+L PQEPL +Y+SA+ V+ +L+ + E HV
Sbjct: 1256 FQWGPEAQKALEDFKKLLTEPPVLASPHPQEPLLMYVSATSQVVSTVLV-VEREEEGHVQ 1314
Query: 358 ------YYISHTLRDAKTRYPQVEKLVYSLVVASRKLRHYFQGREILVKTNQLLKRILHK 519
Y++S L D+KTRYPQV+KL+Y +++ +RKL HYFQG + V T+ L ILH
Sbjct: 1315 KVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSFPLDDILHN 1374
Query: 520 PDMTGRLATW 549
+ GR+A W
Sbjct: 1375 REANGRIAKW 1384
>gb|ABA95029.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1995
Score = 160 bits (404), Expect = 2e-37
Identities = 78/190 (41%), Positives = 122/190 (64%), Gaps = 7/190 (3%)
Frame = +1
Query: 1 GIEADPAQIKVILDIEDPKTLKDIQKLTGCIVALRKFIPQSSKQCLPLFQAIKNASKSSQ 180
GI+A+P ++ IL+++ P T KD+QKLTGC+ AL +F+ + ++ +P F+ +K K+
Sbjct: 1192 GIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLK---KTDD 1248
Query: 181 MDWNDQSRKSLDELKILLTSPPILTRALPQEPLRVYLSASDNSVAVILIRLVDNSETHV- 357
W +++K+ D+ K LLT PP+L PQEPL +Y+SA+ V+ +L+ + E HV
Sbjct: 1249 FQWGPEAQKAFDDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLV-VEREEEGHVQ 1307
Query: 358 ------YYISHTLRDAKTRYPQVEKLVYSLVVASRKLRHYFQGREILVKTNQLLKRILHK 519
Y++S L D+KTRYPQV+KL+Y +++ +RKL HYFQG + V T+ L ILH
Sbjct: 1308 KVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSFPLGDILHN 1367
Query: 520 PDMTGRLATW 549
+ GR+A W
Sbjct: 1368 REANGRIAKW 1377
>gb|AAL82662.1|AC092387_10 retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group] gi|20270061|gb|AAM18149.1|AC092172_9
Putative gag-pol precursor [Oryza sativa Japonica Group]
gi|31430891|gb|AAP52743.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1964
Score = 159 bits (403), Expect = 2e-37
Identities = 77/190 (40%), Positives = 123/190 (64%), Gaps = 7/190 (3%)
Frame = +1
Query: 1 GIEADPAQIKVILDIEDPKTLKDIQKLTGCIVALRKFIPQSSKQCLPLFQAIKNASKSSQ 180
GI+A+P ++ IL+++ P T KD+QKLTGC+ AL +F+ + ++ +P F+ +K K+
Sbjct: 1161 GIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLK---KTDN 1217
Query: 181 MDWNDQSRKSLDELKILLTSPPILTRALPQEPLRVYLSASDNSVAVILIRLVDNSETHV- 357
W +++K+ ++LK LLT PP+L PQEPL +Y+SA+ V+ +L+ + E HV
Sbjct: 1218 FQWGPEAQKAFEDLKQLLTKPPVLASPHPQEPLLLYVSATSQVVSTVLV-VEREEEGHVQ 1276
Query: 358 ------YYISHTLRDAKTRYPQVEKLVYSLVVASRKLRHYFQGREILVKTNQLLKRILHK 519
Y++S L D+KTRYPQV+KL+Y +++ +RKL HYFQG + V T+ L +LH
Sbjct: 1277 KVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSFPLGDVLHN 1336
Query: 520 PDMTGRLATW 549
+ GR+A W
Sbjct: 1337 REANGRIAKW 1346
>gb|ABA95253.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1032
Score = 159 bits (402), Expect = 3e-37
Identities = 77/190 (40%), Positives = 122/190 (64%), Gaps = 7/190 (3%)
Frame = +1
Query: 1 GIEADPAQIKVILDIEDPKTLKDIQKLTGCIVALRKFIPQSSKQCLPLFQAIKNASKSSQ 180
GI+A+P ++ IL+++ P T KD+QKLTGC+ AL +F+ + ++ +P F+ +K K+
Sbjct: 229 GIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLK---KTDD 285
Query: 181 MDWNDQSRKSLDELKILLTSPPILTRALPQEPLRVYLSASDNSVAVILIRLVDNSETHV- 357
W +++K+ ++ K LLT PP+L PQEPL +Y+SA+ V+ +L+ + E HV
Sbjct: 286 FQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLV-VEREEEGHVQ 344
Query: 358 ------YYISHTLRDAKTRYPQVEKLVYSLVVASRKLRHYFQGREILVKTNQLLKRILHK 519
Y++S L D+KTRYPQV+KL+Y +++ +RKL HYFQG + V T+ L ILH
Sbjct: 345 KVQRPIYFVSEALADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSFPLSDILHN 404
Query: 520 PDMTGRLATW 549
+ GR+A W
Sbjct: 405 REANGRIAKW 414
>gb|ABA94908.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1994
Score = 159 bits (402), Expect = 3e-37
Identities = 77/190 (40%), Positives = 122/190 (64%), Gaps = 7/190 (3%)
Frame = +1
Query: 1 GIEADPAQIKVILDIEDPKTLKDIQKLTGCIVALRKFIPQSSKQCLPLFQAIKNASKSSQ 180
GI+A+P ++ IL+++ P T KD+QKLTGC+ AL +F+ + ++ +P F+ +K K+
Sbjct: 1191 GIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLK---KTDN 1247
Query: 181 MDWNDQSRKSLDELKILLTSPPILTRALPQEPLRVYLSASDNSVAVILIRLVDNSETHV- 357
W +++K+ ++ K LLT PP+L PQEPL +YLSA+ V+ +L+ + E HV
Sbjct: 1248 FQWGPEAQKAFEDFKQLLTKPPVLASPHPQEPLLLYLSATSQVVSTVLV-VEREEEGHVQ 1306
Query: 358 ------YYISHTLRDAKTRYPQVEKLVYSLVVASRKLRHYFQGREILVKTNQLLKRILHK 519
Y++S L D+KTRYPQV+KL+Y +++ +RKL HYFQG + V T+ L +LH
Sbjct: 1307 KVQRPIYFVSEVLTDSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSFPLGDVLHN 1366
Query: 520 PDMTGRLATW 549
+ GR+A W
Sbjct: 1367 REANGRIAKW 1376