BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00030803
         (836 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...   182   1e-50
ref|XP_003537204.1| PREDICTED: DNA-directed RNA polymerase I sub...   172   1e-46
ref|XP_002308049.1| predicted protein [Populus trichocarpa] gi|2...   166   2e-46
ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub...   169   7e-46
ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   174   9e-46

>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
           communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
           polymerase I largest subunit, putative [Ricinus
           communis]
          Length = 1686

 Score =  182 bits (462), Expect(2) = 1e-50
 Identities = 90/184 (48%), Positives = 112/184 (60%), Gaps = 15/184 (8%)
 Frame = -2

Query: 835 DPAMGPYDFSKICKTCGQRYNDCPGHCGHIELVNVVYNPMLFDKLYNIIAHTCFYCLRFR 656
           DPA+GP     ICKTCGQR  +CPGHCGHI+LV+ VYNP+LF+ L+ ++  TCF C  FR
Sbjct: 55  DPALGPLSERTICKTCGQRSTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFLCFHFR 114

Query: 655 MDEEVVKLCISQLKMIAKGDIIGARRLD----------EGVILXXXXXXXXXXXSNFQD- 509
           M    V+ CI QL++I KGDI+GA+RL+          E   L               D 
Sbjct: 115 MQRGQVEKCIKQLELIVKGDIVGAKRLESVSPSEALYPEESDLSHESCPTIHSGVQCNDG 174

Query: 508 ----DQSWSSLQFTEASSVLKKFFKPRPIKCKRCGAKNPKISRPTFGWFHMSGLSATDTR 341
                Q W+SLQFTEA SVL  F KP+  KCK C + NP I++PTFGWFH SG+S    R
Sbjct: 175 EHTRQQGWTSLQFTEAMSVLNNFLKPKFKKCKNCESSNPNITKPTFGWFHTSGMSDASIR 234

Query: 340 ANII 329
           AN+I
Sbjct: 235 ANVI 238



 Score = 44.3 bits (103), Expect(2) = 1e-50
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 8/69 (11%)
 Frame = -1

Query: 236 TTSVET------EDSRTNRHVQKVKGT--SHSKQKDTFSRTLLPSEVHGILKTLWANESG 81
           TT VE       + S T +H +K +      ++QK TFS+ LLPSEV   L+ LW NE+ 
Sbjct: 254 TTDVEDAAEPGDQHSGTKKHKKKERKEVLEFTRQKSTFSKQLLPSEVKEKLELLWKNEAR 313

Query: 80  VLSYICSVQ 54
           + S+I  +Q
Sbjct: 314 ICSFISDLQ 322


>ref|XP_003537204.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine
           max]
          Length = 1653

 Score =  172 bits (437), Expect(2) = 1e-46
 Identities = 88/184 (47%), Positives = 118/184 (64%), Gaps = 12/184 (6%)
 Frame = -2

Query: 835 DPAMGPYDFSKICKTCGQRYNDCPGHCGHIELVNVVYNPMLFDKLYNIIAHTCFYCLRFR 656
           D A+GP+D   +CK+CGQ    CPGH GHIELV+ VYNP++F+ L NI+  TCF C  FR
Sbjct: 52  DAALGPFDDKSLCKSCGQTSKHCPGHFGHIELVSPVYNPLMFNILSNILQRTCFTCHHFR 111

Query: 655 MDEEVVKLCISQLKMIAKGDIIGARRLDE---GVILXXXXXXXXXXXSNFQDDQ------ 503
              + V +  SQL++I KGDII A+RL+    G  +            +  + Q      
Sbjct: 112 APSKEVDIRTSQLELIMKGDIIRAKRLESIIPGKSVDSFNPDESIHPGDGDESQCYSAEQ 171

Query: 502 ---SWSSLQFTEASSVLKKFFKPRPIKCKRCGAKNPKISRPTFGWFHMSGLSATDTRANI 332
              +W+SLQF+EA SVL+K    +  KC++CGAKNPKIS+PTFGWFHM+ LSA +TRA+ 
Sbjct: 172 LGENWTSLQFSEAMSVLRKLLTKKHKKCQKCGAKNPKISKPTFGWFHMNVLSADETRADT 231

Query: 331 IRAV 320
           IR+V
Sbjct: 232 IRSV 235



 Score = 40.4 bits (93), Expect(2) = 1e-46
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
 Frame = -1

Query: 236 TTSVE--TEDSRTNRHVQKVKGTSHS-KQKDTFSRTLLPSEVHGILKTLWANESGVLSYI 66
           TT VE  T      R  +K +  S+   +++  S +LLPS+V GIL+ LW NE+ + SYI
Sbjct: 251 TTDVEDITSAGTAKRDKRKKEKLSYKLAEQNKLSGSLLPSQVKGILELLWENEARLCSYI 310

Query: 65  CSVQ 54
             +Q
Sbjct: 311 NDIQ 314


>ref|XP_002308049.1| predicted protein [Populus trichocarpa] gi|222854025|gb|EEE91572.1|
           predicted protein [Populus trichocarpa]
          Length = 1168

 Score =  166 bits (419), Expect(2) = 2e-46
 Identities = 83/185 (44%), Positives = 111/185 (60%), Gaps = 15/185 (8%)
 Frame = -2

Query: 835 DPAMGPYDFSKICKTCGQRYNDCPGHCGHIELVNVVYNPMLFDKLYNIIAHTCFYCLRFR 656
           DPAMGP    + CKTCGQR  +C GHCGHI+L++ VYNP+LF+ L+ ++  TCF+C  FR
Sbjct: 51  DPAMGPLG-DEPCKTCGQRSTNCTGHCGHIDLISPVYNPLLFNFLHKLLQRTCFFCFHFR 109

Query: 655 MDEEVVKLCISQLKMIAKGDIIGARRLDEGVIL--------------XXXXXXXXXXXSN 518
            D   V+  +SQL++I KGD++GA+RLD    +                         +N
Sbjct: 110 ADSNQVEKFVSQLELIIKGDVVGAKRLDSFSPIEASLPEDSDGSSESCSTIHSGARHPNN 169

Query: 517 FQDDQS-WSSLQFTEASSVLKKFFKPRPIKCKRCGAKNPKISRPTFGWFHMSGLSATDTR 341
            Q  QS W+SLQ +EA S+L  F K    KCK C A NP I +PTFGWFH +GLS    R
Sbjct: 170 EQSKQSEWTSLQLSEAMSILNNFLKLESKKCKNCSASNPNIRKPTFGWFHWAGLSNAAIR 229

Query: 340 ANIIR 326
           +N+I+
Sbjct: 230 SNLIK 234



 Score = 46.6 bits (109), Expect(2) = 2e-46
 Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
 Frame = -1

Query: 236 TTSVETEDSRTNRHVQKVKGTSH--SKQKDTFSRTLLPSEVHGILKTLWANESGVLSYIC 63
           T S   ++S TNR++++ +   H  + QKD  S  LLPSE   ILK LW NE+ + S + 
Sbjct: 256 TKSPSNKESATNRNLKEHQKLQHQFTSQKDALSSQLLPSEAMDILKLLWKNEARLCSLMS 315

Query: 62  SVQ 54
            +Q
Sbjct: 316 DIQ 318


>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
           vinifera]
          Length = 1740

 Score =  169 bits (428), Expect(2) = 7e-46
 Identities = 85/207 (41%), Positives = 124/207 (59%), Gaps = 17/207 (8%)
 Frame = -2

Query: 835 DPAMGPYDFSKICKTCGQRYNDCPGHCGHIELVNVVYNPMLFDKLYNIIAHTCFYCLRFR 656
           DPA+G  D +  C++CGQR   CPGHCGHI+LV+ VYNP+LF+ L+N++  TCF+C  F+
Sbjct: 101 DPALGSIDENTPCQSCGQRSFYCPGHCGHIDLVSSVYNPLLFNLLHNLLQKTCFFCHHFK 160

Query: 655 MDEEVVKLCISQLKMIAKGDIIGARRLD-------------EGVILXXXXXXXXXXXSNF 515
               +V+  +SQL++I+KGD++GA+ LD             +G  +            N 
Sbjct: 161 TSSSLVQKYVSQLELISKGDVVGAKNLDSISPSESSYPEDSDGSHVSCSSTVNSSARDNC 220

Query: 514 Q---DDQSWSSLQFTEASSVLKKFFKPRPIKCKRCGAKNPKISRPTFGWFHMSGLSATDT 344
                 Q W+SLQ  EA SV+  F K +   CK C AK+P++++PTFGWFHM+GLS   T
Sbjct: 221 SVHLKQQEWTSLQCIEAMSVMDNFLKLKHRDCKNCKAKSPQVTKPTFGWFHMAGLSDAQT 280

Query: 343 RANIIRAVR-ELSIEKVNHNEYTQEAE 266
           RAN+IR  + E  + +V   + + E E
Sbjct: 281 RANVIRGSKLERPLSRVAEEKSSSEVE 307



 Score = 41.6 bits (96), Expect(2) = 7e-46
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
 Frame = -1

Query: 257 DESNSCMTTSVETEDSRTNRHVQKVKGT--SHSKQKDTFSRTLLPSEVHGILKTLWANES 84
           DE++S +  +   +D+ T R  +K         KQK  FS  LLPSEV  I++ LW NE+
Sbjct: 322 DETHSSIAPTDGIQDTVTKRLERKGAQAPIEFIKQKSFFSGPLLPSEVRDIMERLWENEA 381

Query: 83  GVLSYICSV 57
            + S+I  +
Sbjct: 382 ELCSFISDI 390


>ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I
           subunit RPA1-like [Cucumis sativus]
          Length = 1652

 Score =  174 bits (442), Expect(2) = 9e-46
 Identities = 87/197 (44%), Positives = 120/197 (60%), Gaps = 4/197 (2%)
 Frame = -2

Query: 835 DPAMGPYDFSKICKTCGQRYNDCPGHCGHIELVNVVYNPMLFDKLYNIIAHTCFYCLRFR 656
           DPAMG  D + +CK+CGQR   CPGHCGHI+LV+ VYNP+LF  L+N +  TCF C  FR
Sbjct: 58  DPAMGSLDETTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFR 117

Query: 655 MDEEVVKLCISQLKMIAKGDIIGARRLDEGVILXXXXXXXXXXXSNFQ----DDQSWSSL 488
             E +V+ C + L++I  G+I  A+ L+E  +              ++      ++W+SL
Sbjct: 118 AGESMVENCKTLLELILDGEIAKAKELEEEWMNSKSRTKSSHSMYTYERKNGQPETWTSL 177

Query: 487 QFTEASSVLKKFFKPRPIKCKRCGAKNPKISRPTFGWFHMSGLSATDTRANIIRAVRELS 308
           QF+EA SV+ KF KP+   CK CGAK+PKI++PTFGWFHM GL+    RAN IR  + +S
Sbjct: 178 QFSEAISVVTKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGLAGVQKRANAIRRSKPVS 237

Query: 307 IEKVNHNEYTQEAEIDT 257
           +        + E E  T
Sbjct: 238 VSSGAEGVSSLEEETTT 254



 Score = 35.8 bits (81), Expect(2) = 9e-46
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -1

Query: 218 EDSRTNRHVQKVKGTSHS--KQKDTFSRTLLPSEVHGILKTLWANESGVLSYICSV 57
           E++ T   V+  +  S     QK+  S  LLPSEV  ILK LW NE+ + S+I  +
Sbjct: 250 EETTTEATVEDFEDVSPEVFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDI 305