BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00030508
         (714 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containi...   201   2e-60
ref|XP_003525465.1| PREDICTED: pentatricopeptide repeat-containi...   177   6e-50
ref|XP_003550784.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   167   2e-43
ref|XP_002514751.1| pentatricopeptide repeat-containing protein,...   181   2e-43
ref|XP_002877566.1| pentatricopeptide repeat-containing protein ...   160   1e-42

>ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
           [Vitis vinifera]
          Length = 643

 Score =  201 bits (511), Expect(2) = 2e-60
 Identities = 100/159 (62%), Positives = 117/159 (73%)
 Frame = -2

Query: 494 KKTIRPDPVSCSFVTKTCIKGSLLFCGLQIHGRILRDGHQLDNLLMTNLMDFYSCFRVVD 315
           ++ + P+P+S SFV K+CI+ S L  GLQIH RILRDGHQ DNLL+T LMD YSC    +
Sbjct: 161 RRGVPPNPLSSSFVMKSCIRISSLMGGLQIHARILRDGHQSDNLLLTTLMDLYSCCDKFE 220

Query: 314 DAYKVFDEITMRDNVVWNVLISCCTRNGCTRDA*DVFDRMESSKCEGKPDDVTCLLVLQT 135
           +A KVFDEI   D V WNVLISCC  N  TRDA  +FD M+S+    +PDDVTCLL+LQ 
Sbjct: 221 EACKVFDEIPQWDTVSWNVLISCCIHNRRTRDALRMFDIMQSTADGFEPDDVTCLLLLQA 280

Query: 134 CANLGVLEFGERVHKYIRENRYDKIKNICNSLITMYSSC 18
           CANLG LEFGERVH YI E+ YD   N+CNSLITMYS C
Sbjct: 281 CANLGALEFGERVHNYIEEHGYDGALNLCNSLITMYSRC 319



 Score = 57.8 bits (138), Expect(2) = 2e-60
 Identities = 30/81 (37%), Positives = 44/81 (54%)
 Frame = -1

Query: 714 HAHLISTSFVQNPTXXXXXXXXXXXXXXXXLIHSHRISDQVRKLNISHYNVIIRAYSISK 535
           HAH+I TS +QN                  + +S ++  Q+ K + S YNV+IRAYS+S 
Sbjct: 88  HAHIIRTSLIQNHFISLQFLSRAALSPSRDMGYSSQVFSQIMKPSGSQYNVMIRAYSMSH 147

Query: 534 DPVEGFVLYRQMLQKNHTPRP 472
            P +GF LYR+M ++   P P
Sbjct: 148 SPEQGFYLYREMRRRGVPPNP 168



 Score = 59.7 bits (143), Expect = 6e-07
 Identities = 38/138 (27%), Positives = 67/138 (48%)
 Frame = -2

Query: 518 LFCIDKCCKKTIRPDPVSCSFVTKTCIKGSLLFCGLQIHGRILRDGHQLDNLLMTNLMDF 339
           +F I +       PD V+C  + + C     L  G ++H  I   G+     L  +L+  
Sbjct: 256 MFDIMQSTADGFEPDDVTCLLLLQACANLGALEFGERVHNYIEEHGYDGALNLCNSLITM 315

Query: 338 YSCFRVVDDAYKVFDEITMRDNVVWNVLISCCTRNGCTRDA*DVFDRMESSKCEGKPDDV 159
           YS    ++ AY +F  +  R+ V W+ +IS    +G  R+A + F++M+  +    PDD 
Sbjct: 316 YSRCGRLEKAYSIFKRMDERNVVSWSAMISGFAMHGYGREAIEAFEQMQ--QLGVSPDDQ 373

Query: 158 TCLLVLQTCANLGVLEFG 105
           T   VL  C++ G+++ G
Sbjct: 374 TLTGVLSACSHCGLVDDG 391


>ref|XP_003525465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Glycine max]
          Length = 579

 Score =  177 bits (449), Expect(2) = 6e-50
 Identities = 87/159 (54%), Positives = 109/159 (68%)
 Frame = -2

Query: 494 KKTIRPDPVSCSFVTKTCIKGSLLFCGLQIHGRILRDGHQLDNLLMTNLMDFYSCFRVVD 315
           ++ I  DP+S SF  K+CI+   L  G+Q+H  I +DGHQ D LL+T +MD YS  +   
Sbjct: 97  RRGIAADPLSSSFAVKSCIRFLYLPGGVQVHCNIFKDGHQWDTLLLTAVMDLYSLCQRGG 156

Query: 314 DAYKVFDEITMRDNVVWNVLISCCTRNGCTRDA*DVFDRMESSKCEGKPDDVTCLLVLQT 135
           DA KVFDE+  RD V WNV+ISCC RN  TRDA  +FD M+ S  + +PDDVTCLL+LQ 
Sbjct: 157 DACKVFDEMPHRDTVAWNVMISCCIRNNRTRDALSLFDVMQGSSYKCEPDDVTCLLLLQA 216

Query: 134 CANLGVLEFGERVHKYIRENRYDKIKNICNSLITMYSSC 18
           CA+L  LEFGER+H YI E  Y    N+CNSLI+MYS C
Sbjct: 217 CAHLNALEFGERIHGYIMERGYRDALNLCNSLISMYSRC 255



 Score = 46.6 bits (109), Expect(2) = 6e-50
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = -1

Query: 714 HAHLISTSFVQNPTXXXXXXXXXXXXXXXXLI-HSHRISDQVRKLNISHYNVIIRAYSIS 538
           HAH+I T+ +Q PT                   +S R   Q+    +SHYN +IRA S+S
Sbjct: 23  HAHIIRTTLIQYPTVSLQFLSRIALSGPLQDASYSQRFFGQLSHPLVSHYNTMIRACSMS 82

Query: 537 KDPVEGFVLYRQMLQKNHTPRP 472
             P +G +LYR M ++     P
Sbjct: 83  DSPQKGLLLYRDMRRRGIAADP 104



 Score = 63.5 bits (153), Expect = 4e-08
 Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 1/135 (0%)
 Frame = -2

Query: 479 PDPVSCSFVTKTCIKGSLLFCGLQIHGRILRDGHQLDNLLMTNLMDFYSCFRVVDDAYKV 300
           PD V+C  + + C   + L  G +IHG I+  G++    L  +L+  YS    +D AY+V
Sbjct: 205 PDDVTCLLLLQACAHLNALEFGERIHGYIMERGYRDALNLCNSLISMYSRCGCLDKAYEV 264

Query: 299 FDEITMRDNVVWNVLISCCTRNGCTRDA*DVFDRMESSKCEGKPDDVTCLLVLQTCANLG 120
           F  +  ++ V W+ +IS    NG  R+A + F+ M   +    PDD T   VL  C+  G
Sbjct: 265 FKGMGNKNVVSWSAMISGLAMNGYGREAIEAFEEM--LRIGVLPDDQTFTGVLSACSYSG 322

Query: 119 VLEFG-ERVHKYIRE 78
           +++ G    H+  RE
Sbjct: 323 MVDEGMSFFHRMSRE 337


>ref|XP_003550784.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g47530-like [Glycine max]
          Length = 515

 Score =  167 bits (424), Expect(2) = 2e-43
 Identities = 84/161 (52%), Positives = 111/161 (68%), Gaps = 2/161 (1%)
 Frame = -2

Query: 494 KKTIRPDPVSCSFVTKTCIK--GSLLFCGLQIHGRILRDGHQLDNLLMTNLMDFYSCFRV 321
           ++ I  DP+S SFV K+CI+  G  L  G+Q+H  I + GHQ D LL+T +MD YS  + 
Sbjct: 30  RRGIAADPLSSSFVVKSCIRLXGLYLLGGVQVHCNIFKYGHQWDTLLLTAVMDLYSXCQR 89

Query: 320 VDDAYKVFDEITMRDNVVWNVLISCCTRNGCTRDA*DVFDRMESSKCEGKPDDVTCLLVL 141
             DA KVFDE+  RD V WNV+ISCC RN  TRDA  +FD +++S  + +PDDVTCLL+L
Sbjct: 90  GGDACKVFDEMPPRDTVAWNVMISCCIRNNRTRDALSLFDVLQNSSYKCEPDDVTCLLLL 149

Query: 140 QTCANLGVLEFGERVHKYIRENRYDKIKNICNSLITMYSSC 18
           Q CA+L  LEFGER+H Y+ E+ Y    N+ N+LI+MYS C
Sbjct: 150 QACAHLYALEFGERIHGYMMEHGYGGALNLSNALISMYSRC 190



 Score = 34.7 bits (78), Expect(2) = 2e-43
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 579 ISHYNVIIRAYSISKDPVEGFVLYRQMLQKNHTPRP 472
           +S+YN +IRA S+S  P +G +LYR M ++     P
Sbjct: 2   VSYYNTMIRACSMSDSPQKGLLLYRDMRRRGIAADP 37



 Score = 55.8 bits (133), Expect = 8e-06
 Identities = 38/125 (30%), Positives = 61/125 (48%)
 Frame = -2

Query: 479 PDPVSCSFVTKTCIKGSLLFCGLQIHGRILRDGHQLDNLLMTNLMDFYSCFRVVDDAYKV 300
           PD V+C  + + C     L  G +IHG ++  G+     L   L+  YS    +D A +V
Sbjct: 140 PDDVTCLLLLQACAHLYALEFGERIHGYMMEHGYGGALNLSNALISMYSRCGCLDKAXEV 199

Query: 299 FDEITMRDNVVWNVLISCCTRNGCTRDA*DVFDRMESSKCEGKPDDVTCLLVLQTCANLG 120
           F     ++ V W+ +IS    NG  R+A + F+ M   +   +PDD T   VL  C+  G
Sbjct: 200 FKGTGNKNVVSWSAMISGLAMNGYGREAIESFEEM--LRIGIRPDDQTLTGVLSACSYSG 257

Query: 119 VLEFG 105
           +++ G
Sbjct: 258 MVDEG 262


>ref|XP_002514751.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223546355|gb|EEF47857.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 335

 Score =  181 bits (458), Expect = 2e-43
 Identities = 91/159 (57%), Positives = 112/159 (70%)
 Frame = -2

Query: 494 KKTIRPDPVSCSFVTKTCIKGSLLFCGLQIHGRILRDGHQLDNLLMTNLMDFYSCFRVVD 315
           +K +R DP+S SFV K  +K S L  G+Q+H R+LRDG Q D+LL+TNLMD YS      
Sbjct: 23  QKGLRADPLSLSFVIKCFVKVSSLMGGVQVHARLLRDGFQSDSLLLTNLMDLYSFCEKGT 82

Query: 314 DAYKVFDEITMRDNVVWNVLISCCTRNGCTRDA*DVFDRMESSKCEGKPDDVTCLLVLQT 135
           +A +VFDEI  RD V WNVLISC  RN  TRD   +FD M S +   +PDDVTCLL++Q 
Sbjct: 83  EACRVFDEIPQRDTVAWNVLISCFIRNQRTRDVLGLFDDMVSGEFGCEPDDVTCLLLVQA 142

Query: 134 CANLGVLEFGERVHKYIRENRYDKIKNICNSLITMYSSC 18
           C+NLG LEFGE+VH YI+ +RY    N+CNSLITMYS C
Sbjct: 143 CSNLGALEFGEKVHLYIQGHRYGDKTNLCNSLITMYSRC 181


>ref|XP_002877566.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297323404|gb|EFH53825.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 591

 Score =  160 bits (405), Expect(2) = 1e-42
 Identities = 85/155 (54%), Positives = 103/155 (66%), Gaps = 2/155 (1%)
 Frame = -2

Query: 476 DPVSCSFVTKTCIKGSLLFCGLQIHGRILRDGHQLDNLLMTNLMDFYSCFRVVDDAYKVF 297
           +P+S SF  K CIK   L  GLQIHG+I  DG   D+LLMT LMD YS      DA KVF
Sbjct: 112 NPLSSSFALKCCIKSGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVF 171

Query: 296 DEITMRDNVVWNVLISCCTRNGCTRDA*DVFDRMES--SKCEGKPDDVTCLLVLQTCANL 123
           DEI  RD V WNVLISC  RN  TRD   +FD+M++   +C  KPD+VTCLL LQ CANL
Sbjct: 172 DEIPQRDTVSWNVLISCYLRNKRTRDVLVLFDKMKNDVDRCV-KPDNVTCLLALQACANL 230

Query: 122 GVLEFGERVHKYIRENRYDKIKNICNSLITMYSSC 18
           G L+FG++VH +I EN      N+ N+L++MYS C
Sbjct: 231 GALDFGKQVHDFIDENGLSGALNLSNTLVSMYSRC 265



 Score = 39.3 bits (90), Expect(2) = 1e-42
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = -1

Query: 714 HAHLISTSFVQNPTXXXXXXXXXXXXXXXXLI-HSHRISDQVRKLNISHYNVIIRAYSIS 538
           HA L+ TS ++N                   I +S R+  Q     +SH N +IRA+S+S
Sbjct: 31  HAVLLRTSLIRNSDVFHHFFSRLALSLIPRDINYSCRVFSQRLNPTLSHCNTMIRAFSLS 90

Query: 537 KDPVEGFVLYRQM 499
           + P EGF L+R +
Sbjct: 91  QTPCEGFRLFRAL 103



 Score = 61.2 bits (147), Expect = 2e-07
 Identities = 43/151 (28%), Positives = 72/151 (47%)
 Frame = -2

Query: 509 IDKCCKKTIRPDPVSCSFVTKTCIKGSLLFCGLQIHGRILRDGHQLDNLLMTNLMDFYSC 330
           +D+C    ++PD V+C    + C     L  G Q+H  I  +G      L   L+  YS 
Sbjct: 209 VDRC----VKPDNVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSNTLVSMYSR 264

Query: 329 FRVVDDAYKVFDEITMRDNVVWNVLISCCTRNGCTRDA*DVFDRMESSKCEGKPDDVTCL 150
              +D AY+VF+ +  R+ V W  +IS    NG  ++A + F+ M   K    P++ T  
Sbjct: 265 CGSMDKAYEVFNRMRERNVVSWTAMISGLAMNGFGKEAIEAFNEM--LKFGISPEEQTLT 322

Query: 149 LVLQTCANLGVLEFGERVHKYIRENRYDKIK 57
            +L  C++ G+++ G      +R   + KIK
Sbjct: 323 GLLSACSHSGLVDEGMMFFDRMRSGEF-KIK 352