BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00030402
         (424 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsu...   118   5e-32
ref|XP_002526196.1| pentatricopeptide repeat-containing protein,...   110   1e-28
ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containi...   125   4e-27
emb|CBI31119.3| unnamed protein product [Vitis vinifera]              125   4e-27
ref|XP_002311390.1| predicted protein [Populus trichocarpa] gi|2...    97   2e-25

>gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum]
           gi|227462998|gb|ACP39951.1| pentatricopeptide repeat
           protein [Gossypium hirsutum]
          Length = 532

 Score =  118 bits (296), Expect(2) = 5e-32
 Identities = 54/98 (55%), Positives = 70/98 (71%)
 Frame = -3

Query: 305 KKNVVAWSVMINGYVKVGCFKEALEIFNEIQRSGVRPNHXXXXXXXXXXXXXXXLDQGKW 126
           ++N V+WS MI GYV +G F+EALE+FN++Q +G+RPNH               LD G+W
Sbjct: 202 ERNEVSWSAMITGYVHMGMFREALELFNDLQLTGLRPNHAGIVGALTACSYLGSLDHGRW 261

Query: 125 IHAYLDRSKMELDTVLGTSLIDMYAKCGFVEAACRVFE 12
           IHAY+DR+  ELD VLGT+L+DMYAKCG +E AC VFE
Sbjct: 262 IHAYVDRNGTELDRVLGTALVDMYAKCGCIEIACSVFE 299



 Score = 44.3 bits (103), Expect(2) = 5e-32
 Identities = 17/28 (60%), Positives = 24/28 (85%)
 Frame = -2

Query: 390 IVTWTAVLNGYVKCGDVGSAKKLFDEMP 307
           ++TWTA++NGYVK G V  A++LFD+MP
Sbjct: 174 VITWTALINGYVKSGHVEFARELFDQMP 201


>ref|XP_002526196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223534500|gb|EEF36200.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 491

 Score =  110 bits (274), Expect(2) = 1e-28
 Identities = 52/105 (49%), Positives = 68/105 (64%)
 Frame = -3

Query: 329 RSCLMKCRKKNVVAWSVMINGYVKVGCFKEALEIFNEIQRSGVRPNHXXXXXXXXXXXXX 150
           R    K  ++N V+WS MI GYV+VG F+EALE+FN +  SG  PNH             
Sbjct: 197 RELFDKMPERNSVSWSAMITGYVRVGFFEEALELFNAMLISGFWPNHAGIVCAINACASL 256

Query: 149 XXLDQGKWIHAYLDRSKMELDTVLGTSLIDMYAKCGFVEAACRVF 15
             LDQG+WIH Y+ R++M+LD V+G +LIDMYAKCG +E AC +F
Sbjct: 257 GALDQGRWIHCYIKRNRMDLDRVMGAALIDMYAKCGCIEIACSIF 301



 Score = 41.2 bits (95), Expect(2) = 1e-28
 Identities = 15/28 (53%), Positives = 23/28 (82%)
 Frame = -2

Query: 390 IVTWTAVLNGYVKCGDVGSAKKLFDEMP 307
           ++TWTA++NGYV+ G V   ++LFD+MP
Sbjct: 177 VITWTALINGYVRAGQVLIGRELFDKMP 204


>ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 537

 Score =  125 bits (314), Expect = 4e-27
 Identities = 58/109 (53%), Positives = 76/109 (69%)
 Frame = -3

Query: 335 VLRSCLMKCRKKNVVAWSVMINGYVKVGCFKEALEIFNEIQRSGVRPNHXXXXXXXXXXX 156
           V R    +  +KN V+WS MI GY ++G F+EALE+FN++Q +G RPNH           
Sbjct: 197 VARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACA 256

Query: 155 XXXXLDQGKWIHAYLDRSKMELDTVLGTSLIDMYAKCGFVEAACRVFED 9
               LDQG+WIHAY+DR++M LD +LGT+LIDMYAKCG VE ACRVF++
Sbjct: 257 FLGALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDE 305


>emb|CBI31119.3| unnamed protein product [Vitis vinifera]
          Length = 512

 Score =  125 bits (314), Expect = 4e-27
 Identities = 58/109 (53%), Positives = 76/109 (69%)
 Frame = -3

Query: 335 VLRSCLMKCRKKNVVAWSVMINGYVKVGCFKEALEIFNEIQRSGVRPNHXXXXXXXXXXX 156
           V R    +  +KN V+WS MI GY ++G F+EALE+FN++Q +G RPNH           
Sbjct: 172 VARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACA 231

Query: 155 XXXXLDQGKWIHAYLDRSKMELDTVLGTSLIDMYAKCGFVEAACRVFED 9
               LDQG+WIHAY+DR++M LD +LGT+LIDMYAKCG VE ACRVF++
Sbjct: 232 FLGALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDE 280


>ref|XP_002311390.1| predicted protein [Populus trichocarpa] gi|222851210|gb|EEE88757.1|
           predicted protein [Populus trichocarpa]
          Length = 594

 Score = 96.7 bits (239), Expect(2) = 2e-25
 Identities = 43/109 (39%), Positives = 72/109 (66%), Gaps = 1/109 (0%)
 Frame = -3

Query: 326 SCLM-KCRKKNVVAWSVMINGYVKVGCFKEALEIFNEIQRSGVRPNHXXXXXXXXXXXXX 150
           SCL  +  K+N+V+WS +I GY+++GC+ +ALE+F E+Q + V+ +              
Sbjct: 253 SCLFDEMPKRNLVSWSALIKGYIQIGCYSKALELFKEMQVAKVKMDEVIVTTLLSACARL 312

Query: 149 XXLDQGKWIHAYLDRSKMELDTVLGTSLIDMYAKCGFVEAACRVFEDDG 3
             LDQG+W+H Y+D+  +++D  L T+LIDMY+KCG ++ A +VF++ G
Sbjct: 313 GALDQGRWLHMYIDKHGIKVDAHLSTALIDMYSKCGRIDMAWKVFQETG 361



 Score = 43.9 bits (102), Expect(2) = 2e-25
 Identities = 16/28 (57%), Positives = 23/28 (82%)
 Frame = -2

Query: 390 IVTWTAVLNGYVKCGDVGSAKKLFDEMP 307
           +V+W  ++NGYVK GD+  A++LFDEMP
Sbjct: 202 VVSWNCLINGYVKSGDLDEARRLFDEMP 229