BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00030140
         (298 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAD66733.1| orf136a [Beta vulgaris subsp. vulgaris] gi|54606...   102   3e-20
gb|ABM05483.1| LTR retrotransposon-like protein [Rhodiola fastig...    89   3e-16
gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsi...    88   6e-16
emb|CAB40067.1| putative retrotransposon polyprotein [Arabidopsi...    88   8e-16
emb|CAN69607.1| hypothetical protein VITISV_009561 [Vitis vinifera]    87   2e-15

>dbj|BAD66733.1| orf136a [Beta vulgaris subsp. vulgaris] gi|54606754|dbj|BAD66777.1|
           orf136a [Beta vulgaris subsp. vulgaris]
          Length = 136

 Score =  102 bits (254), Expect = 3e-20
 Identities = 50/99 (50%), Positives = 63/99 (63%)
 Frame = +2

Query: 2   YLKGTLNVGLFYKANIPLQLTAYSDADWGTCPFSARSLSGYAIFLGSSLIXXXXXXXXXX 181
           YL GTL+ GL Y  +  L+LTA+ D+DWGTC FSARS +GY +FLG SLI          
Sbjct: 18  YLAGTLDWGLDYPTDSELKLTAFCDSDWGTCAFSARSFTGYCVFLGRSLISWKTKKQKTF 77

Query: 182 XXXIDESEYRSMSYTTSEIIWLHGLLADLSVHVPLPIDL 298
                E+EYR M  TTSE++W+  +L DL  +VP PIDL
Sbjct: 78  SKSSAEAEYRCMPQTTSEVVWIDAILEDLGFNVPKPIDL 116


>gb|ABM05483.1| LTR retrotransposon-like protein [Rhodiola fastigiata]
          Length = 383

 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 44/99 (44%), Positives = 59/99 (59%)
 Frame = +2

Query: 2   YLKGTLNVGLFYKANIPLQLTAYSDADWGTCPFSARSLSGYAIFLGSSLIXXXXXXXXXX 181
           YLKG    G+FY +N  LQL+ + DADWG+CP + RS+SG  + LG S+I          
Sbjct: 220 YLKGCPAQGVFYPSNQTLQLSVFCDADWGSCPLTRRSVSGCCVLLGQSVISWKTKKQAIV 279

Query: 182 XXXIDESEYRSMSYTTSEIIWLHGLLADLSVHVPLPIDL 298
                E+EYR+M++   E+ WL  LLADL V VP P+ L
Sbjct: 280 SRSSAEAEYRAMAHACCEVSWLTRLLADLQVQVPTPVAL 318


>gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1461

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 44/97 (45%), Positives = 58/97 (59%)
 Frame = +2

Query: 2    YLKGTLNVGLFYKANIPLQLTAYSDADWGTCPFSARSLSGYAIFLGSSLIXXXXXXXXXX 181
            Y+KGT+  GLFY A   L L  Y+DADWGTCP S RS +G+ +F+GSSLI          
Sbjct: 1284 YIKGTVGQGLFYSAEDDLTLKGYTDADWGTCPDSRRSTTGFTMFVGSSLISWRSKKQPTV 1343

Query: 182  XXXIDESEYRSMSYTTSEIIWLHGLLADLSVHVPLPI 292
                 E+EYR+++  + E+ WL  LL  L VH  +PI
Sbjct: 1344 SRSSAEAEYRALALASCEMAWLSTLLLALRVHSGVPI 1380


>emb|CAB40067.1| putative retrotransposon polyprotein [Arabidopsis thaliana]
            gi|7267797|emb|CAB81200.1| putative retrotransposon
            polyprotein [Arabidopsis thaliana]
          Length = 1203

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 47/99 (47%), Positives = 57/99 (57%)
 Frame = +2

Query: 2    YLKGTLNVGLFYKANIPLQLTAYSDADWGTCPFSARSLSGYAIFLGSSLIXXXXXXXXXX 181
            YLKG    GL Y A+  L L  +SDADWGTC  S RS++G+ I+LG+SLI          
Sbjct: 862  YLKGNPGQGLMYSASSELCLNGFSDADWGTCKDSRRSVTGFCIYLGTSLITWKSKKQSVV 921

Query: 182  XXXIDESEYRSMSYTTSEIIWLHGLLADLSVHVPLPIDL 298
                 ESEYRS++  T EIIWL  LL DL V +  P  L
Sbjct: 922  SRSSTESEYRSLAQATCEIIWLQQLLKDLHVTMTCPAKL 960


>emb|CAN69607.1| hypothetical protein VITISV_009561 [Vitis vinifera]
          Length = 1207

 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 44/95 (46%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
 Frame = +2

Query: 2    YLKGTLNVGL-FYKANIPLQLTAYSDADWGTCPFSARSLSGYAIFLGSSLIXXXXXXXXX 178
            Y+KGTL+ GL F  + IP  L AYSDADW  CP + RS SGY+I+LG++L+         
Sbjct: 1060 YVKGTLHFGLTFCPSTIPSALVAYSDADWAGCPDTRRSTSGYSIYLGNNLVSWSAKKQPT 1119

Query: 179  XXXXIDESEYRSMSYTTSEIIWLHGLLADLSVHVP 283
                  ESEYR+++ T +E++WL  LL DL+V +P
Sbjct: 1120 VSRSSCESEYRALAMTAAELLWLTHLLHDLNVPIP 1154