BLASTX nr result
ID: Cnidium21_contig00030119
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00030119
(363 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179466.1| DNA excision repair protein E [Arabidopsis thal... 74 9e-12
emb|CBI37137.3| unnamed protein product [Vitis vinifera] 73 2e-11
ref|XP_002272543.1| PREDICTED: DNA excision repair protein ERCC-... 73 2e-11
emb|CAN67815.1| hypothetical protein VITISV_002502 [Vitis vinifera] 73 2e-11
ref|XP_002886265.1| predicted protein [Arabidopsis lyrata subsp.... 72 5e-11
>ref|NP_179466.1| DNA excision repair protein E [Arabidopsis thaliana]
gi|4185142|gb|AAD08945.1| putative SNF2/RAD54 family DNA
repair and recombination protein [Arabidopsis thaliana]
gi|330251711|gb|AEC06805.1| DNA excision repair protein
E [Arabidopsis thaliana]
Length = 1187
Score = 74.3 bits (181), Expect = 9e-12
Identities = 34/52 (65%), Positives = 42/52 (80%)
Frame = +3
Query: 126 SLQSNKMYRAFLSSPEVDRIFIGNRYSLYGTDVIRKICNHSDLLEREHSYGN 281
+++ YRAFL+S EV++IF GNR SLYG DV+RKICNH DLLEREHS+ N
Sbjct: 666 TVEQRSTYRAFLASSEVEQIFDGNRNSLYGIDVMRKICNHPDLLEREHSHQN 717
Score = 67.4 bits (163), Expect = 1e-09
Identities = 50/110 (45%), Positives = 60/110 (54%), Gaps = 6/110 (5%)
Frame = +2
Query: 50 LILRMKADVNAQLTKKNEHVLFCCSITSE*QNVSSISF*P*G*PYLYWKQIFSLWN*--- 220
L+ RMKADVNA LTKK EHVLFC S+T E ++ ++ SL+
Sbjct: 641 LLRRMKADVNAHLTKKTEHVLFC-SLTVEQRSTYRAFLASSEVEQIFDGNRNSLYGIDVM 699
Query: 221 ---CDTQDLQPFRSA*KGTFLREPD*GISERSGKMKVVAEDLKVWKQQGH 361
C+ DL + + PD G ERSGKMKVVAE LKVWKQQGH
Sbjct: 700 RKICNHPDLLEREHS-----HQNPDYGNPERSGKMKVVAEVLKVWKQQGH 744
>emb|CBI37137.3| unnamed protein product [Vitis vinifera]
Length = 1116
Score = 73.2 bits (178), Expect = 2e-11
Identities = 33/50 (66%), Positives = 41/50 (82%)
Frame = +3
Query: 132 QSNKMYRAFLSSPEVDRIFIGNRYSLYGTDVIRKICNHSDLLEREHSYGN 281
+ +YRAFL+S EV++IF G+R SLYG DV+RKICNH DLLEREH+Y N
Sbjct: 655 EQRSVYRAFLASSEVEQIFDGSRNSLYGIDVMRKICNHPDLLEREHAYQN 704
Score = 63.9 bits (154), Expect = 1e-08
Identities = 48/110 (43%), Positives = 59/110 (53%), Gaps = 6/110 (5%)
Frame = +2
Query: 50 LILRMKADVNAQLTKKNEHVLFCCSITSE*QNVSSISF*P*G*PYLYWKQIFSLW----- 214
L+ RMKADVNAQL K EHVLF CS+T+E ++V ++ SL+
Sbjct: 628 LLRRMKADVNAQLPNKTEHVLF-CSLTTEQRSVYRAFLASSEVEQIFDGSRNSLYGIDVM 686
Query: 215 -N*CDTQDLQPFRSA*KGTFLREPD*GISERSGKMKVVAEDLKVWKQQGH 361
C+ DL A + PD G ERSGKMKVVA LK WK+QGH
Sbjct: 687 RKICNHPDLLEREHA-----YQNPDYGNPERSGKMKVVAHVLKGWKEQGH 731
>ref|XP_002272543.1| PREDICTED: DNA excision repair protein ERCC-6-like [Vitis vinifera]
Length = 1227
Score = 73.2 bits (178), Expect = 2e-11
Identities = 33/50 (66%), Positives = 41/50 (82%)
Frame = +3
Query: 132 QSNKMYRAFLSSPEVDRIFIGNRYSLYGTDVIRKICNHSDLLEREHSYGN 281
+ +YRAFL+S EV++IF G+R SLYG DV+RKICNH DLLEREH+Y N
Sbjct: 682 EQRSVYRAFLASSEVEQIFDGSRNSLYGIDVMRKICNHPDLLEREHAYQN 731
Score = 63.9 bits (154), Expect = 1e-08
Identities = 48/110 (43%), Positives = 59/110 (53%), Gaps = 6/110 (5%)
Frame = +2
Query: 50 LILRMKADVNAQLTKKNEHVLFCCSITSE*QNVSSISF*P*G*PYLYWKQIFSLW----- 214
L+ RMKADVNAQL K EHVLF CS+T+E ++V ++ SL+
Sbjct: 655 LLRRMKADVNAQLPNKTEHVLF-CSLTTEQRSVYRAFLASSEVEQIFDGSRNSLYGIDVM 713
Query: 215 -N*CDTQDLQPFRSA*KGTFLREPD*GISERSGKMKVVAEDLKVWKQQGH 361
C+ DL A + PD G ERSGKMKVVA LK WK+QGH
Sbjct: 714 RKICNHPDLLEREHA-----YQNPDYGNPERSGKMKVVAHVLKGWKEQGH 758
>emb|CAN67815.1| hypothetical protein VITISV_002502 [Vitis vinifera]
Length = 1249
Score = 73.2 bits (178), Expect = 2e-11
Identities = 33/50 (66%), Positives = 41/50 (82%)
Frame = +3
Query: 132 QSNKMYRAFLSSPEVDRIFIGNRYSLYGTDVIRKICNHSDLLEREHSYGN 281
+ +YRAFL+S EV++IF G+R SLYG DV+RKICNH DLLEREH+Y N
Sbjct: 704 EQRSVYRAFLASSEVEQIFDGSRNSLYGIDVMRKICNHPDLLEREHAYQN 753
Score = 63.9 bits (154), Expect = 1e-08
Identities = 48/110 (43%), Positives = 59/110 (53%), Gaps = 6/110 (5%)
Frame = +2
Query: 50 LILRMKADVNAQLTKKNEHVLFCCSITSE*QNVSSISF*P*G*PYLYWKQIFSLW----- 214
L+ RMKADVNAQL K EHVLF CS+T+E ++V ++ SL+
Sbjct: 677 LLRRMKADVNAQLPNKTEHVLF-CSLTTEQRSVYRAFLASSEVEQIFDGSRNSLYGIDVM 735
Query: 215 -N*CDTQDLQPFRSA*KGTFLREPD*GISERSGKMKVVAEDLKVWKQQGH 361
C+ DL A + PD G ERSGKMKVVA LK WK+QGH
Sbjct: 736 RKICNHPDLLEREHA-----YQNPDYGNPERSGKMKVVAHVLKGWKEQGH 780
>ref|XP_002886265.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297332105|gb|EFH62524.1| predicted protein
[Arabidopsis lyrata subsp. lyrata]
Length = 1181
Score = 72.0 bits (175), Expect = 5e-11
Identities = 33/52 (63%), Positives = 41/52 (78%)
Frame = +3
Query: 126 SLQSNKMYRAFLSSPEVDRIFIGNRYSLYGTDVIRKICNHSDLLEREHSYGN 281
+++ YRAFL+S EV++I GNR SLYG DV+RKICNH DLLEREHS+ N
Sbjct: 664 TVEQRSTYRAFLASSEVEQILDGNRNSLYGIDVMRKICNHPDLLEREHSHQN 715
Score = 65.9 bits (159), Expect = 3e-09
Identities = 50/110 (45%), Positives = 59/110 (53%), Gaps = 6/110 (5%)
Frame = +2
Query: 50 LILRMKADVNAQLTKKNEHVLFCCSITSE*QNVSSISF*P*G*PYLYWKQIFSLWN*--- 220
L+ RMKADVNA LTKK EHVLFC S+T E ++ + SL+
Sbjct: 639 LLRRMKADVNAHLTKKTEHVLFC-SLTVEQRSTYRAFLASSEVEQILDGNRNSLYGIDVM 697
Query: 221 ---CDTQDLQPFRSA*KGTFLREPD*GISERSGKMKVVAEDLKVWKQQGH 361
C+ DL + + PD G ERSGKMKVVAE LKVWKQQGH
Sbjct: 698 RKICNHPDLLEREHS-----HQNPDYGNPERSGKMKVVAEVLKVWKQQGH 742