BLASTX nr result

ID: Cnidium21_contig00029792 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00029792
         (310 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275116.1| PREDICTED: protein TOPLESS [Vitis vinifera] ...    55   2e-07
gb|AAP45184.2| Beta transducin-like protein, putative [Solanum b...    57   2e-07
ref|XP_002520011.1| conserved hypothetical protein [Ricinus comm...    53   1e-06
ref|XP_002328986.1| predicted protein [Populus trichocarpa] gi|2...    53   1e-06
ref|XP_002465540.1| hypothetical protein SORBIDRAFT_01g040800 [S...    53   2e-06

>ref|XP_002275116.1| PREDICTED: protein TOPLESS [Vitis vinifera]
           gi|297737353|emb|CBI26554.3| unnamed protein product
           [Vitis vinifera]
          Length = 1135

 Score = 55.5 bits (132), Expect(2) = 2e-07
 Identities = 26/38 (68%), Positives = 29/38 (76%)
 Frame = -1

Query: 310 GVAFSKHIAQIYT*SRAEKLTHHLEIDAHIGGVNKIGF 197
           GVAFSKHI QIYT +   +L  HLEIDAHIGGVN + F
Sbjct: 423 GVAFSKHIVQIYTYNPTGELRQHLEIDAHIGGVNDVAF 460



 Score = 24.3 bits (51), Expect(2) = 2e-07
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 201 ALANPYKQFCIVTSG 157
           A A+P KQ CIVT G
Sbjct: 459 AFAHPNKQLCIVTCG 473


>gb|AAP45184.2| Beta transducin-like protein, putative [Solanum bulbocastanum]
          Length = 610

 Score = 56.6 bits (135), Expect(2) = 2e-07
 Identities = 28/38 (73%), Positives = 29/38 (76%)
 Frame = -1

Query: 310 GVAFSKHIAQIYT*SRAEKLTHHLEIDAHIGGVNKIGF 197
           GVAFSKHI QIYT S A +L  HLEIDAH GGVN I F
Sbjct: 423 GVAFSKHIVQIYTYSPAGELRQHLEIDAHAGGVNDIAF 460



 Score = 23.1 bits (48), Expect(2) = 2e-07
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = -2

Query: 201 ALANPYKQFCIVTSGVR*EDDSISWA*NIIYLKHAK*FLQHA----*LCNRYKESV 46
           A ++P KQ C+VT G    DD      + +  +    F  H      +C  YKES+
Sbjct: 459 AFSHPNKQLCVVTCG----DDKTIKVWDAVSGRRQHMFEGHEAPVYSVCPHYKESI 510


>ref|XP_002520011.1| conserved hypothetical protein [Ricinus communis]
           gi|223540775|gb|EEF42335.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 1137

 Score = 52.8 bits (125), Expect(2) = 1e-06
 Identities = 24/38 (63%), Positives = 28/38 (73%)
 Frame = -1

Query: 310 GVAFSKHIAQIYT*SRAEKLTHHLEIDAHIGGVNKIGF 197
           GVAFSKHI Q+Y  +   +L  HLEIDAH+GGVN I F
Sbjct: 425 GVAFSKHIVQLYAYNPTGELRQHLEIDAHVGGVNDIAF 462



 Score = 24.3 bits (51), Expect(2) = 1e-06
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 201 ALANPYKQFCIVTSG 157
           A A+P KQ CIVT G
Sbjct: 461 AFAHPNKQLCIVTCG 475


>ref|XP_002328986.1| predicted protein [Populus trichocarpa] gi|222839220|gb|EEE77571.1|
           predicted protein [Populus trichocarpa]
          Length = 1099

 Score = 52.8 bits (125), Expect(2) = 1e-06
 Identities = 25/38 (65%), Positives = 28/38 (73%)
 Frame = -1

Query: 310 GVAFSKHIAQIYT*SRAEKLTHHLEIDAHIGGVNKIGF 197
           GVAFSKHI QIYT +   +   HLEIDAH+GGVN I F
Sbjct: 425 GVAFSKHIVQIYTYNPTGEPRQHLEIDAHVGGVNDIAF 462



 Score = 24.3 bits (51), Expect(2) = 1e-06
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 201 ALANPYKQFCIVTSG 157
           A A+P KQ CIVT G
Sbjct: 461 AFAHPNKQLCIVTCG 475


>ref|XP_002465540.1| hypothetical protein SORBIDRAFT_01g040800 [Sorghum bicolor]
           gi|241919394|gb|EER92538.1| hypothetical protein
           SORBIDRAFT_01g040800 [Sorghum bicolor]
          Length = 1125

 Score = 52.8 bits (125), Expect(2) = 2e-06
 Identities = 24/38 (63%), Positives = 29/38 (76%)
 Frame = -1

Query: 310 GVAFSKHIAQIYT*SRAEKLTHHLEIDAHIGGVNKIGF 197
           GVA+S+HI QIY+ +  + L  HLEIDAHIGGVN I F
Sbjct: 428 GVAYSRHIVQIYSYNGGDDLRQHLEIDAHIGGVNDIAF 465



 Score = 23.9 bits (50), Expect(2) = 2e-06
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 201 ALANPYKQFCIVTSG 157
           A A+P KQ CI+T G
Sbjct: 464 AFAHPNKQLCIITCG 478


Top