BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00029590
         (376 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras...   111   7e-23
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   110   1e-22
emb|CAN65186.1| hypothetical protein VITISV_023905 [Vitis vinifera]   110   1e-22
sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymeras...   110   1e-22
ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   106   2e-21

>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic;
           AltName: Full=NictaRpoT3-tom; AltName: Full=T7
           bacteriophage-type single subunit RNA polymerase 3B;
           Flags: Precursor gi|21425667|emb|CAC95021.2| chloroplast
           RNA polymerase [Nicotiana tabacum]
          Length = 977

 Score =  111 bits (277), Expect = 7e-23
 Identities = 55/90 (61%), Positives = 68/90 (75%), Gaps = 3/90 (3%)
 Frame = -3

Query: 263 PSTHPEEDENERVFIQDPPWITSFVMRNLCNRSKENSNVDRKEME---RRKYFKLRRRQV 93
           P+    ++ N+RVFIQDPPW++S  M +L  R+K+   V R+  E   RR+Y  LRRRQ+
Sbjct: 88  PNGFLNKESNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQI 147

Query: 92  KAETEAWESMVEEYRELEREMCDKKLAPNL 3
           KAETEAWE MVEEYRELEREMC+KKLAPNL
Sbjct: 148 KAETEAWEQMVEEYRELEREMCEKKLAPNL 177


>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
           vinifera]
          Length = 979

 Score =  110 bits (275), Expect = 1e-22
 Identities = 51/79 (64%), Positives = 64/79 (81%), Gaps = 3/79 (3%)
 Frame = -3

Query: 230 RVFIQDPPWITSFVMRNLCNRSK---ENSNVDRKEMERRKYFKLRRRQVKAETEAWESMV 60
           R+F+QDPPWI+SF+  + C R++   +N  ++ +E ERR Y  LRRRQVKAETEAWE MV
Sbjct: 103 RIFVQDPPWISSFLFHDWCERNRRTGQNVKLEFRETERRNYGLLRRRQVKAETEAWERMV 162

Query: 59  EEYRELEREMCDKKLAPNL 3
           EEYRE+EREMC+KKLAPNL
Sbjct: 163 EEYREIEREMCEKKLAPNL 181


>emb|CAN65186.1| hypothetical protein VITISV_023905 [Vitis vinifera]
          Length = 1312

 Score =  110 bits (275), Expect = 1e-22
 Identities = 51/79 (64%), Positives = 64/79 (81%), Gaps = 3/79 (3%)
 Frame = -3

Query: 230 RVFIQDPPWITSFVMRNLCNRSK---ENSNVDRKEMERRKYFKLRRRQVKAETEAWESMV 60
           R+F+QDPPWI+SF+  + C R++   +N  ++ +E ERR Y  LRRRQVKAETEAWE MV
Sbjct: 103 RIFVQDPPWISSFLFHDWCERNRRTGQNVKLEFRETERRNYGLLRRRQVKAETEAWERMV 162

Query: 59  EEYRELEREMCDKKLAPNL 3
           EEYRE+EREMC+KKLAPNL
Sbjct: 163 EEYREIEREMCEKKLAPNL 181


>sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic;
           AltName: Full=NsRpoT-C; AltName: Full=T7
           bacteriophage-type single subunit RNA polymerase 3;
           Flags: Precursor gi|59800203|sp|P69243.1|RPO3A_TOBAC
           RecName: Full=DNA-directed RNA polymerase 3A,
           chloroplastic; AltName: Full=NictaRpoT3-syl; AltName:
           Full=T7 bacteriophage-type single subunit RNA polymerase
           3A; Flags: Precursor gi|21425641|emb|CAC82576.3|
           phage-type RNA polymerase [Nicotiana sylvestris]
           gi|21425679|emb|CAC95027.2| plastid RNA polymerase
           [Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7
           bacteriophage-type single subunit RNA polymerase
           [Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7
           bacteriophage-type single subunit RNA polymerase
           [Nicotiana sylvestris]
          Length = 977

 Score =  110 bits (275), Expect = 1e-22
 Identities = 54/84 (64%), Positives = 66/84 (78%), Gaps = 3/84 (3%)
 Frame = -3

Query: 245 EDENERVFIQDPPWITSFVMRNLCNRSKENSNVDRKEME---RRKYFKLRRRQVKAETEA 75
           ++ N+RVFIQDPPW++S  M +L  R+K+   V R+  E   RR+Y  LRRRQ+KAETEA
Sbjct: 95  KESNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEA 154

Query: 74  WESMVEEYRELEREMCDKKLAPNL 3
           WE MVEEYRELEREMC+KKLAPNL
Sbjct: 155 WEQMVEEYRELEREMCEKKLAPNL 178


>ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Cucumis sativus]
          Length = 975

 Score =  106 bits (264), Expect = 2e-21
 Identities = 48/80 (60%), Positives = 63/80 (78%)
 Frame = -3

Query: 242 DENERVFIQDPPWITSFVMRNLCNRSKENSNVDRKEMERRKYFKLRRRQVKAETEAWESM 63
           + ++R+FIQDPPWI S  ++ L    ++   ++  E+E+RKY  LRRRQ+KAETEAWE M
Sbjct: 99  ESSKRIFIQDPPWIASLFLKGLYKCVQKEVKLEFMEIEKRKYNLLRRRQIKAETEAWEKM 158

Query: 62  VEEYRELEREMCDKKLAPNL 3
           VEEY+ELEREMC+KKLAPNL
Sbjct: 159 VEEYKELEREMCEKKLAPNL 178