BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00029099
         (2067 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containi...   551   e-154
emb|CBI26570.3| unnamed protein product [Vitis vinifera]              544   e-152
emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]   540   e-151
ref|NP_188439.2| pentatricopeptide repeat-containing protein [Ar...   491   e-150
ref|XP_003564143.1| PREDICTED: pentatricopeptide repeat-containi...   473   e-144

>ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
            chloroplastic-like [Vitis vinifera]
          Length = 1442

 Score =  551 bits (1421), Expect = e-154
 Identities = 266/336 (79%), Positives = 302/336 (89%)
 Frame = +2

Query: 2    KLDRSFYHIMMKTYRNSGSHSKAENLLFTMKEAGIEPTIATMHLLMISYGSSGHPTEAEE 181
            KLDRSFYHIMMK +RNSG+HSKAE LL  MKEAG+EPTIATMHLLM+SY  SG P EAE+
Sbjct: 1024 KLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEK 1083

Query: 182  VLKNLKSTGENLSTLPYTSVIDAYLKNGDYTIAVKKLLEMKGDGLEPDYRIWTCFVRAAS 361
            VL NLK  G  LSTLPY+SVIDAYLKNGD+ +A++KL+EMK DGLEPD+RIWTCFVRAAS
Sbjct: 1084 VLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLEPDHRIWTCFVRAAS 1143

Query: 362  LCQNTSEALTILSAIRDAGFEIPIKLLTENTESLVLEMDQFLERVEPIEDNAAFNLVNAL 541
            L Q+TSEA+ +L A+RD GF++PI+LLTE ++SLV E+D  LE++ P+EDNAAFN VNAL
Sbjct: 1144 LSQHTSEAIVLLKALRDTGFDLPIRLLTEKSDSLVSEVDNCLEKLGPLEDNAAFNFVNAL 1203

Query: 542  EDLLWAFNLRATASWVFQLAIKRNIYNHNVFRVAEKDWGADFRKLSAGAALVGLTLWLDH 721
            EDLLWAF LRATASWVFQLA+KR+IY H+VFRVAEKDWGADFRK+SAG+ALVGLTLWLDH
Sbjct: 1204 EDLLWAFELRATASWVFQLAVKRSIYRHDVFRVAEKDWGADFRKMSAGSALVGLTLWLDH 1263

Query: 722  MQDASLDGFPESPKSVVLITGTAEYNQVSLNSTIKAFLWEMGSPFLPCKTRSGLLIAKAH 901
            MQDASL G+P SPKSVVLITGTAEYN VSLNST+KAFLWEMGSPFLPCKTRSGLL+AKAH
Sbjct: 1264 MQDASLQGYPLSPKSVVLITGTAEYNMVSLNSTLKAFLWEMGSPFLPCKTRSGLLVAKAH 1323

Query: 902  SLRMWLKDSPFCFDLELKNASSLPEENSMQLIEGCY 1009
            SLRMWLKDS FC DLELK+A SLPE NSMQL+EGC+
Sbjct: 1324 SLRMWLKDSSFCLDLELKDAPSLPESNSMQLMEGCF 1359



 Score = 89.0 bits (219), Expect = 5e-15
 Identities = 50/79 (63%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
 Frame = +3

Query: 933  FALTLS*KMLHPFPRRTRCSLLKDV-IRRGLVPAFKDITERLGLVRPKKFSRLALLSDEK 1109
            F L L  K     P      L++   +RRGLVPAFKDITERLG VRPKKF+RLALL DEK
Sbjct: 1334 FCLDLELKDAPSLPESNSMQLMEGCFLRRGLVPAFKDITERLGDVRPKKFARLALLPDEK 1393

Query: 1110 RDKAIEADIVGRKEKLEKL 1166
            RDK I ADI G KEKLEK+
Sbjct: 1394 RDKVIRADIEGGKEKLEKM 1412


>emb|CBI26570.3| unnamed protein product [Vitis vinifera]
          Length = 1042

 Score =  544 bits (1402), Expect = e-152
 Identities = 266/344 (77%), Positives = 302/344 (87%), Gaps = 8/344 (2%)
 Frame = +2

Query: 2    KLDRSFYHIMMKTYRNSGSHSKAENLLFTMKEAGIEPTIATMHLLMISYGSSGHPTEAEE 181
            KLDRSFYHIMMK +RNSG+HSKAE LL  MKEAG+EPTIATMHLLM+SY  SG P EAE+
Sbjct: 606  KLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEK 665

Query: 182  VLKNLKSTGENLSTLPYTSVIDAYLKNGDYTIAVKKLLEMKGDGLEPDYRIWTCFVRAAS 361
            VL NLK  G  LSTLPY+SVIDAYLKNGD+ +A++KL+EMK DGLEPD+RIWTCFVRAAS
Sbjct: 666  VLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLEPDHRIWTCFVRAAS 725

Query: 362  LCQNTSEALTILSAIRDAGFEIPIKLLTENTESLVLEMDQFLERVEPIEDNAAFNLVNAL 541
            L Q+TSEA+ +L A+RD GF++PI+LLTE ++SLV E+D  LE++ P+EDNAAFN VNAL
Sbjct: 726  LSQHTSEAIVLLKALRDTGFDLPIRLLTEKSDSLVSEVDNCLEKLGPLEDNAAFNFVNAL 785

Query: 542  EDLLWAFNLRATASWVFQLAIKRNIYNHNVFRVAEKDWGADFRKLSAGAALVGLTLWLDH 721
            EDLLWAF LRATASWVFQLA+KR+IY H+VFRVAEKDWGADFRK+SAG+ALVGLTLWLDH
Sbjct: 786  EDLLWAFELRATASWVFQLAVKRSIYRHDVFRVAEKDWGADFRKMSAGSALVGLTLWLDH 845

Query: 722  M--------QDASLDGFPESPKSVVLITGTAEYNQVSLNSTIKAFLWEMGSPFLPCKTRS 877
            M        QDASL G+P SPKSVVLITGTAEYN VSLNST+KAFLWEMGSPFLPCKTRS
Sbjct: 846  MQAKYFYFWQDASLQGYPLSPKSVVLITGTAEYNMVSLNSTLKAFLWEMGSPFLPCKTRS 905

Query: 878  GLLIAKAHSLRMWLKDSPFCFDLELKNASSLPEENSMQLIEGCY 1009
            GLL+AKAHSLRMWLKDS FC DLELK+A SLPE NSMQL+EGC+
Sbjct: 906  GLLVAKAHSLRMWLKDSSFCLDLELKDAPSLPESNSMQLMEGCF 949



 Score = 89.0 bits (219), Expect = 5e-15
 Identities = 50/79 (63%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
 Frame = +3

Query: 933  FALTLS*KMLHPFPRRTRCSLLKDV-IRRGLVPAFKDITERLGLVRPKKFSRLALLSDEK 1109
            F L L  K     P      L++   +RRGLVPAFKDITERLG VRPKKF+RLALL DEK
Sbjct: 924  FCLDLELKDAPSLPESNSMQLMEGCFLRRGLVPAFKDITERLGDVRPKKFARLALLPDEK 983

Query: 1110 RDKAIEADIVGRKEKLEKL 1166
            RDK I ADI G KEKLEK+
Sbjct: 984  RDKVIRADIEGGKEKLEKM 1002


>emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]
          Length = 1494

 Score =  540 bits (1390), Expect = e-151
 Identities = 266/356 (74%), Positives = 302/356 (84%), Gaps = 20/356 (5%)
 Frame = +2

Query: 2    KLDRSFYHIMMKTYRNSGSHSKAENLLFTMKEAGIEPTIATMHLLMISYGSSGHPTEAEE 181
            KLDRSFYHIMMK +RNSG+HSKAE LL  MKEAG+EPTIATMHLLM+SY  SG P EAE+
Sbjct: 1056 KLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEK 1115

Query: 182  VLKNLKSTGENLSTLPYTSVIDAYLKNGDYTIAVKKLLEMKGDGLEPDYRIWTCFVRAAS 361
            VL NLK  G  LSTLPY+SVIDAYLKNGD+ +A++KL+EMK DGLEPD+RIWTCFVRAAS
Sbjct: 1116 VLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLEPDHRIWTCFVRAAS 1175

Query: 362  LCQNTSEALTILSAIRDAGFEIPIKLLTENTESLVLEMDQFLERVEPIEDNAAFNLVNAL 541
            L Q+TSEA+ +L A+RD GF++PI+LLTE ++SLV E+D  LE++ P+EDNAAFN VNAL
Sbjct: 1176 LSQHTSEAIVLLKALRDTGFDLPIRLLTEKSDSLVSEVDNCLEKLGPLEDNAAFNFVNAL 1235

Query: 542  EDLLWAFNLRATASWVFQLAIKRNIYNHNVFRVAEKDWGADFRKLSAGAALVGLTLWLDH 721
            EDLLWAF LRATASWVFQLA+KR+IY H+VFRVAEKDWGADFRK+SAG+ALVGLTLWLDH
Sbjct: 1236 EDLLWAFELRATASWVFQLAVKRSIYRHDVFRVAEKDWGADFRKMSAGSALVGLTLWLDH 1295

Query: 722  M--------------------QDASLDGFPESPKSVVLITGTAEYNQVSLNSTIKAFLWE 841
            M                    QDASL G+P SPKSVVLITGTAEYN VSLNST+KAFLWE
Sbjct: 1296 MQASFLITIFVQLMEEYFYFWQDASLQGYPLSPKSVVLITGTAEYNMVSLNSTLKAFLWE 1355

Query: 842  MGSPFLPCKTRSGLLIAKAHSLRMWLKDSPFCFDLELKNASSLPEENSMQLIEGCY 1009
            MGSPFLPCKTRSGLL+AKAHSLRMWLKDS FC DLELK+A SLPE NSMQL+EGC+
Sbjct: 1356 MGSPFLPCKTRSGLLVAKAHSLRMWLKDSSFCLDLELKDAPSLPESNSMQLMEGCF 1411



 Score = 89.0 bits (219), Expect = 5e-15
 Identities = 50/79 (63%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
 Frame = +3

Query: 933  FALTLS*KMLHPFPRRTRCSLLKDV-IRRGLVPAFKDITERLGLVRPKKFSRLALLSDEK 1109
            F L L  K     P      L++   +RRGLVPAFKDITERLG VRPKKF+RLALL DEK
Sbjct: 1386 FCLDLELKDAPSLPESNSMQLMEGCFLRRGLVPAFKDITERLGDVRPKKFARLALLPDEK 1445

Query: 1110 RDKAIEADIVGRKEKLEKL 1166
            RDK I ADI G KEKLEK+
Sbjct: 1446 RDKVIRADIEGGKEKLEKM 1464


>ref|NP_188439.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|322510063|sp|Q5G1S8.2|PP241_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At3g18110, chloroplastic; AltName: Full=Protein EMBRYO
            DEFECTIVE 1270; Flags: Precursor
            gi|9294066|dbj|BAB02023.1| unnamed protein product
            [Arabidopsis thaliana] gi|332642528|gb|AEE76049.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            thaliana]
          Length = 1440

 Score =  491 bits (1263), Expect(2) = e-150
 Identities = 239/336 (71%), Positives = 282/336 (83%)
 Frame = +2

Query: 2    KLDRSFYHIMMKTYRNSGSHSKAENLLFTMKEAGIEPTIATMHLLMISYGSSGHPTEAEE 181
            KLDRSFYH MMK  R+SGS SKAE LL  MK AGIEPT+ATMHLLM+SY SSG+P EAE+
Sbjct: 1029 KLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEK 1088

Query: 182  VLKNLKSTGENLSTLPYTSVIDAYLKNGDYTIAVKKLLEMKGDGLEPDYRIWTCFVRAAS 361
            VL NLK T   L+TLPY+SVIDAYL++ DY   +++LLEMK +GLEPD+RIWTCFVRAAS
Sbjct: 1089 VLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVRAAS 1148

Query: 362  LCQNTSEALTILSAIRDAGFEIPIKLLTENTESLVLEMDQFLERVEPIEDNAAFNLVNAL 541
              +   E + +L A+ D GF++PI+LL    E LV E+D + E+++ IEDNAA N VNAL
Sbjct: 1149 FSKEKIEVMLLLKALEDIGFDLPIRLLAGRPELLVSEVDGWFEKLKSIEDNAALNFVNAL 1208

Query: 542  EDLLWAFNLRATASWVFQLAIKRNIYNHNVFRVAEKDWGADFRKLSAGAALVGLTLWLDH 721
             +LLWAF LRATASWVFQL IKR I++ +VFRVA+KDWGADFR+LS GAALV LTLWLDH
Sbjct: 1209 LNLLWAFELRATASWVFQLGIKRGIFSLDVFRVADKDWGADFRRLSGGAALVALTLWLDH 1268

Query: 722  MQDASLDGFPESPKSVVLITGTAEYNQVSLNSTIKAFLWEMGSPFLPCKTRSGLLIAKAH 901
            MQDASL+G+PESPKSVVLITGTAEYN +SL+ T+KA LWEMGSPFLPCKTR+GLL+AKAH
Sbjct: 1269 MQDASLEGYPESPKSVVLITGTAEYNGISLDKTLKACLWEMGSPFLPCKTRTGLLVAKAH 1328

Query: 902  SLRMWLKDSPFCFDLELKNASSLPEENSMQLIEGCY 1009
            SLRMWLKDSPFCFDLELK++ SLPE NSM LI+GC+
Sbjct: 1329 SLRMWLKDSPFCFDLELKDSVSLPESNSMDLIDGCF 1364



 Score = 69.3 bits (168), Expect(2) = e-150
 Identities = 36/54 (66%), Positives = 42/54 (77%), Gaps = 1/54 (1%)
 Frame = +3

Query: 1008 IRRGLVPAFKDITERLG-LVRPKKFSRLALLSDEKRDKAIEADIVGRKEKLEKL 1166
            IRRGLVPAF  I ERLG  V PKKFSRLALL DE R++ I+ DI G ++KLEK+
Sbjct: 1365 IRRGLVPAFNHIKERLGGFVSPKKFSRLALLPDEMRERVIKTDIEGHRQKLEKM 1418



 Score = 59.3 bits (142), Expect = 4e-06
 Identities = 33/136 (24%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
 Frame = +2

Query: 20  YHIMMKTYRNSGSHSKAENLLFTMKEAGIEPTIATMHLLMISYGSSGHPTEAEEVLKNLK 199
           Y+ M+  Y   G  ++AE L   ++  G  P   T + L+ ++    +  + +EV + ++
Sbjct: 335 YNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQ 394

Query: 200 STGENLSTLPYTSVIDAYLKNGDYTIAVKKLLEMKG-DGLEPDYRIWTCFVRAASLCQNT 376
             G     + Y ++I  Y K G   +A++   +MKG  G  PD   +T  + +      T
Sbjct: 395 KMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRT 454

Query: 377 SEALTILSAIRDAGFE 424
            EA  ++S + D G +
Sbjct: 455 VEAAALMSEMLDVGIK 470


>ref|XP_003564143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
            chloroplastic-like [Brachypodium distachyon]
          Length = 1285

 Score =  473 bits (1216), Expect(2) = e-144
 Identities = 221/336 (65%), Positives = 281/336 (83%)
 Frame = +2

Query: 2    KLDRSFYHIMMKTYRNSGSHSKAENLLFTMKEAGIEPTIATMHLLMISYGSSGHPTEAEE 181
            +L+RS YH++MK YR++ +HSKAE LL +MKE GIEPTIATMH+LM SYG++GHP EAE+
Sbjct: 866  RLNRSLYHMLMKIYRDACNHSKAEQLLASMKEDGIEPTIATMHILMTSYGTAGHPDEAEK 925

Query: 182  VLKNLKSTGENLSTLPYTSVIDAYLKNGDYTIAVKKLLEMKGDGLEPDYRIWTCFVRAAS 361
            VL +LKS+   +STLPY++V +AYLKNGDY + + KLLEMK DG++PD+++WTCF+RAAS
Sbjct: 926  VLNSLKSSSLEVSTLPYSTVFNAYLKNGDYNLGITKLLEMKADGVKPDHQVWTCFIRAAS 985

Query: 362  LCQNTSEALTILSAIRDAGFEIPIKLLTENTESLVLEMDQFLERVEPIEDNAAFNLVNAL 541
            LC+ T++A+ +L+++RD  F++PI+LLTE T SL+ E+  FLE ++ +ED+AA N VNAL
Sbjct: 986  LCERTADAILLLNSLRDCEFDLPIRLLTERTSSLLTEVSNFLEELDALEDSAALNFVNAL 1045

Query: 542  EDLLWAFNLRATASWVFQLAIKRNIYNHNVFRVAEKDWGADFRKLSAGAALVGLTLWLDH 721
            EDLLWAF  RATAS+VFQLA+ ++IY HNVFRV EKDWGADFRKLSAGAAL  LTLWLD 
Sbjct: 1046 EDLLWAFECRATASYVFQLAVDKSIYRHNVFRVVEKDWGADFRKLSAGAALTALTLWLDQ 1105

Query: 722  MQDASLDGFPESPKSVVLITGTAEYNQVSLNSTIKAFLWEMGSPFLPCKTRSGLLIAKAH 901
            MQDASL G PESPKS+VL+TG  EYN VSL  TI+A+L EMGSPFLPCKTRSG  +AK++
Sbjct: 1106 MQDASLQGSPESPKSIVLVTGEGEYNMVSLRKTIRAYLLEMGSPFLPCKTRSGRFVAKSY 1165

Query: 902  SLRMWLKDSPFCFDLELKNASSLPEENSMQLIEGCY 1009
            SL+MWLKDS FC DLELK+A  LP+ NSM+L +G +
Sbjct: 1166 SLKMWLKDSAFCMDLELKDAPDLPKMNSMKLTDGYF 1201



 Score = 67.8 bits (164), Expect(2) = e-144
 Identities = 36/57 (63%), Positives = 41/57 (71%)
 Frame = +3

Query: 1008 IRRGLVPAFKDITERLGLVRPKKFSRLALLSDEKRDKAIEADIVGRKEKLEKLTESG 1178
            +R GLV  F DI E+LG V PKKFSRLALLS+E R   I+ADI GRKEKL K+   G
Sbjct: 1202 MRAGLVSTFNDIHEQLGEVWPKKFSRLALLSEESRATVIKADIQGRKEKLAKMKTQG 1258