BLASTX nr result
ID: Cnidium21_contig00028654
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Cnidium21_contig00028654 (352 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002523532.1| Ribonuclease III, putative [Ricinus communis... 84 9e-15 gb|AFO53518.1| dicer-like protein 4 [Solanum lycopersicum] 82 3e-14 ref|XP_002873991.1| predicted protein [Arabidopsis lyrata subsp.... 81 8e-14 gb|AFD22621.1| dicer-like 4 protein [Nicotiana attenuata] 78 9e-13 ref|NP_197532.3| dicer-like protein 4 [Arabidopsis thaliana] gi|... 77 1e-12 >ref|XP_002523532.1| Ribonuclease III, putative [Ricinus communis] gi|223537239|gb|EEF38871.1| Ribonuclease III, putative [Ricinus communis] Length = 1633 Score = 84.3 bits (207), Expect = 9e-15 Identities = 52/134 (38%), Positives = 67/134 (50%), Gaps = 17/134 (12%) Frame = +1 Query: 1 LIGYNETPTDVTAPYATEVDNLKVQDSKIES----IREISSLPDPLECHTIVEDDNSSYK 168 LIGY+ETP D+TA + NLK+QD IR +S L + I + Sbjct: 1467 LIGYDETPIDITAHDPIGLQNLKIQDPSCSDFNPKIRSMSKLTNTCSPCFIAANIQPPSP 1526 Query: 169 SQTTGGSFKKL-------------AKSILSEICAANGWDPPVFVCCKEEGESHLKEFTYR 309 S GG AKS L +ICAAN W PP+F CC EEG SHLK F+Y+ Sbjct: 1527 SVMVGGQPSATVAYPTSDMDKPTSAKSRLHDICAANCWKPPLFECCYEEGPSHLKSFSYK 1586 Query: 310 VIVKPDCLPKCIID 351 VIV+ + P I++ Sbjct: 1587 VIVEIEAAPDMILE 1600 >gb|AFO53518.1| dicer-like protein 4 [Solanum lycopersicum] Length = 1620 Score = 82.4 bits (202), Expect = 3e-14 Identities = 49/128 (38%), Positives = 71/128 (55%), Gaps = 21/128 (16%) Frame = +1 Query: 1 LIGYNETPTDVTAPYATEVDNLKVQDS-------------------KIESIREISSLPDP 123 LIGY+ETP +T ++D + +S K +S R++ S Sbjct: 1452 LIGYDETPCVLTT-ICDDLDKHETSESDCHLKVFPVNEELARSCNFKSKSTRKLLSTEAS 1510 Query: 124 LECHT--IVEDDNSSYKSQTTGGSFKKLAKSILSEICAANGWDPPVFVCCKEEGESHLKE 297 ++C++ + + S ++ TGGS + AKS L EICAAN W PP+F CCKE G SHLKE Sbjct: 1511 VQCNSDQTIMSNGSKEDAKATGGSKTESAKSRLHEICAANCWKPPLFECCKETGPSHLKE 1570 Query: 298 FTYRVIVK 321 FT+RV+V+ Sbjct: 1571 FTFRVLVE 1578 >ref|XP_002873991.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297319828|gb|EFH50250.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 1693 Score = 81.3 bits (199), Expect = 8e-14 Identities = 53/131 (40%), Positives = 68/131 (51%), Gaps = 14/131 (10%) Frame = +1 Query: 1 LIGYNETPTDVTAPYATEVDNLKVQDSKIESIREISS-------LP-------DPLECHT 138 LIGYNE P DV +V+NLK+Q++ E+ EISS LP D L T Sbjct: 1544 LIGYNEDPIDVVNLVGLDVENLKIQENLGEN-SEISSSYVIRRGLPQAPSKTEDRLPQKT 1602 Query: 139 IVEDDNSSYKSQTTGGSFKKLAKSILSEICAANGWDPPVFVCCKEEGESHLKEFTYRVIV 318 I+E G K AKS+L E C AN W PP F CC+EEG HLK F Y+VI+ Sbjct: 1603 IIE----------AGRPSSKTAKSLLHETCVANCWKPPHFECCEEEGPGHLKSFFYKVIL 1652 Query: 319 KPDCLPKCIID 351 + + P ++ Sbjct: 1653 EVEDAPNMTLE 1663 >gb|AFD22621.1| dicer-like 4 protein [Nicotiana attenuata] Length = 1622 Score = 77.8 bits (190), Expect = 9e-13 Identities = 51/126 (40%), Positives = 68/126 (53%), Gaps = 19/126 (15%) Frame = +1 Query: 1 LIGYNETP-------TDVTAPYATEVD-NLKVQDSKIESIREIS---------SLPDPLE 129 LIGY+E P DV A+E D +LKV E R + ++ Sbjct: 1455 LIGYDEIPCVLTAKCNDVEKNEASESDRDLKVFPISEELARNCNFKLKACEKVGPKAAVQ 1514 Query: 130 CHT--IVEDDNSSYKSQTTGGSFKKLAKSILSEICAANGWDPPVFVCCKEEGESHLKEFT 303 C++ + + S+ S+ TGG+ AKSIL E+CAAN W PP F CCKE G SHLKEFT Sbjct: 1515 CNSEQTIMPNGSNSDSKATGGAINGSAKSILHEVCAANCWKPPRFECCKETGPSHLKEFT 1574 Query: 304 YRVIVK 321 +RV+V+ Sbjct: 1575 FRVVVE 1580 >ref|NP_197532.3| dicer-like protein 4 [Arabidopsis thaliana] gi|322510021|sp|P84634.2|DCL4_ARATH RecName: Full=Dicer-like protein 4 gi|73672051|gb|AAZ80387.1| dicer-like 4 [Arabidopsis thaliana] gi|332005447|gb|AED92830.1| dicer-like protein 4 [Arabidopsis thaliana] Length = 1702 Score = 77.4 bits (189), Expect = 1e-12 Identities = 46/123 (37%), Positives = 62/123 (50%), Gaps = 6/123 (4%) Frame = +1 Query: 1 LIGYNETPTDVTAPYATEVDNLKVQDSKIESIREISS------LPDPLECHTIVEDDNSS 162 LIGYNE P DV +V+NL + ++ + SS LP + + ED Sbjct: 1552 LIGYNEDPIDVVDLVGLDVENLNILETFGGNSERSSSYVIRRGLP---QAPSKTEDRLPQ 1608 Query: 163 YKSQTTGGSFKKLAKSILSEICAANGWDPPVFVCCKEEGESHLKEFTYRVIVKPDCLPKC 342 GG K AKS+L E C AN W PP F CC+EEG HLK F Y+VI++ + P Sbjct: 1609 KAIIKAGGPSSKTAKSLLHETCVANCWKPPHFECCEEEGPGHLKSFVYKVILEVEDAPNM 1668 Query: 343 IID 351 ++ Sbjct: 1669 TLE 1671