BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00028654
         (352 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002523532.1| Ribonuclease III, putative [Ricinus communis...    84   9e-15
gb|AFO53518.1| dicer-like protein 4 [Solanum lycopersicum]             82   3e-14
ref|XP_002873991.1| predicted protein [Arabidopsis lyrata subsp....    81   8e-14
gb|AFD22621.1| dicer-like 4 protein [Nicotiana attenuata]              78   9e-13
ref|NP_197532.3| dicer-like protein 4 [Arabidopsis thaliana] gi|...    77   1e-12

>ref|XP_002523532.1| Ribonuclease III, putative [Ricinus communis]
            gi|223537239|gb|EEF38871.1| Ribonuclease III, putative
            [Ricinus communis]
          Length = 1633

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 52/134 (38%), Positives = 67/134 (50%), Gaps = 17/134 (12%)
 Frame = +1

Query: 1    LIGYNETPTDVTAPYATEVDNLKVQDSKIES----IREISSLPDPLECHTIVEDDNSSYK 168
            LIGY+ETP D+TA     + NLK+QD         IR +S L +      I  +      
Sbjct: 1467 LIGYDETPIDITAHDPIGLQNLKIQDPSCSDFNPKIRSMSKLTNTCSPCFIAANIQPPSP 1526

Query: 169  SQTTGGSFKKL-------------AKSILSEICAANGWDPPVFVCCKEEGESHLKEFTYR 309
            S   GG                  AKS L +ICAAN W PP+F CC EEG SHLK F+Y+
Sbjct: 1527 SVMVGGQPSATVAYPTSDMDKPTSAKSRLHDICAANCWKPPLFECCYEEGPSHLKSFSYK 1586

Query: 310  VIVKPDCLPKCIID 351
            VIV+ +  P  I++
Sbjct: 1587 VIVEIEAAPDMILE 1600


>gb|AFO53518.1| dicer-like protein 4 [Solanum lycopersicum]
          Length = 1620

 Score = 82.4 bits (202), Expect = 3e-14
 Identities = 49/128 (38%), Positives = 71/128 (55%), Gaps = 21/128 (16%)
 Frame = +1

Query: 1    LIGYNETPTDVTAPYATEVDNLKVQDS-------------------KIESIREISSLPDP 123
            LIGY+ETP  +T     ++D  +  +S                   K +S R++ S    
Sbjct: 1452 LIGYDETPCVLTT-ICDDLDKHETSESDCHLKVFPVNEELARSCNFKSKSTRKLLSTEAS 1510

Query: 124  LECHT--IVEDDNSSYKSQTTGGSFKKLAKSILSEICAANGWDPPVFVCCKEEGESHLKE 297
            ++C++   +  + S   ++ TGGS  + AKS L EICAAN W PP+F CCKE G SHLKE
Sbjct: 1511 VQCNSDQTIMSNGSKEDAKATGGSKTESAKSRLHEICAANCWKPPLFECCKETGPSHLKE 1570

Query: 298  FTYRVIVK 321
            FT+RV+V+
Sbjct: 1571 FTFRVLVE 1578


>ref|XP_002873991.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
            gi|297319828|gb|EFH50250.1| predicted protein
            [Arabidopsis lyrata subsp. lyrata]
          Length = 1693

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 53/131 (40%), Positives = 68/131 (51%), Gaps = 14/131 (10%)
 Frame = +1

Query: 1    LIGYNETPTDVTAPYATEVDNLKVQDSKIESIREISS-------LP-------DPLECHT 138
            LIGYNE P DV      +V+NLK+Q++  E+  EISS       LP       D L   T
Sbjct: 1544 LIGYNEDPIDVVNLVGLDVENLKIQENLGEN-SEISSSYVIRRGLPQAPSKTEDRLPQKT 1602

Query: 139  IVEDDNSSYKSQTTGGSFKKLAKSILSEICAANGWDPPVFVCCKEEGESHLKEFTYRVIV 318
            I+E           G    K AKS+L E C AN W PP F CC+EEG  HLK F Y+VI+
Sbjct: 1603 IIE----------AGRPSSKTAKSLLHETCVANCWKPPHFECCEEEGPGHLKSFFYKVIL 1652

Query: 319  KPDCLPKCIID 351
            + +  P   ++
Sbjct: 1653 EVEDAPNMTLE 1663


>gb|AFD22621.1| dicer-like 4 protein [Nicotiana attenuata]
          Length = 1622

 Score = 77.8 bits (190), Expect = 9e-13
 Identities = 51/126 (40%), Positives = 68/126 (53%), Gaps = 19/126 (15%)
 Frame = +1

Query: 1    LIGYNETP-------TDVTAPYATEVD-NLKVQDSKIESIREIS---------SLPDPLE 129
            LIGY+E P        DV    A+E D +LKV     E  R  +              ++
Sbjct: 1455 LIGYDEIPCVLTAKCNDVEKNEASESDRDLKVFPISEELARNCNFKLKACEKVGPKAAVQ 1514

Query: 130  CHT--IVEDDNSSYKSQTTGGSFKKLAKSILSEICAANGWDPPVFVCCKEEGESHLKEFT 303
            C++   +  + S+  S+ TGG+    AKSIL E+CAAN W PP F CCKE G SHLKEFT
Sbjct: 1515 CNSEQTIMPNGSNSDSKATGGAINGSAKSILHEVCAANCWKPPRFECCKETGPSHLKEFT 1574

Query: 304  YRVIVK 321
            +RV+V+
Sbjct: 1575 FRVVVE 1580


>ref|NP_197532.3| dicer-like protein 4 [Arabidopsis thaliana]
            gi|322510021|sp|P84634.2|DCL4_ARATH RecName:
            Full=Dicer-like protein 4 gi|73672051|gb|AAZ80387.1|
            dicer-like 4 [Arabidopsis thaliana]
            gi|332005447|gb|AED92830.1| dicer-like protein 4
            [Arabidopsis thaliana]
          Length = 1702

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 46/123 (37%), Positives = 62/123 (50%), Gaps = 6/123 (4%)
 Frame = +1

Query: 1    LIGYNETPTDVTAPYATEVDNLKVQDSKIESIREISS------LPDPLECHTIVEDDNSS 162
            LIGYNE P DV      +V+NL + ++   +    SS      LP   +  +  ED    
Sbjct: 1552 LIGYNEDPIDVVDLVGLDVENLNILETFGGNSERSSSYVIRRGLP---QAPSKTEDRLPQ 1608

Query: 163  YKSQTTGGSFKKLAKSILSEICAANGWDPPVFVCCKEEGESHLKEFTYRVIVKPDCLPKC 342
                  GG   K AKS+L E C AN W PP F CC+EEG  HLK F Y+VI++ +  P  
Sbjct: 1609 KAIIKAGGPSSKTAKSLLHETCVANCWKPPHFECCEEEGPGHLKSFVYKVILEVEDAPNM 1668

Query: 343  IID 351
             ++
Sbjct: 1669 TLE 1671