BLASTX nr result

ID: Cnidium21_contig00028025 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00028025
         (588 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002324772.1| predicted protein [Populus trichocarpa] gi|2...   229   3e-58
ref|XP_002265430.1| PREDICTED: uncharacterized protein LOC100256...   229   3e-58
ref|XP_002514634.1| conserved hypothetical protein [Ricinus comm...   203   2e-50
ref|NP_565080.1| Mitochondrial transcription termination factor ...   201   8e-50
ref|XP_004135745.1| PREDICTED: uncharacterized protein LOC101219...   197   1e-48

>ref|XP_002324772.1| predicted protein [Populus trichocarpa] gi|222866206|gb|EEF03337.1|
           predicted protein [Populus trichocarpa]
          Length = 412

 Score =  229 bits (584), Expect = 3e-58
 Identities = 112/191 (58%), Positives = 148/191 (77%)
 Frame = -2

Query: 587 RKFDLDPCDVSCWVESFRGLGFSDDTVCKVLEVNPMVIMASEERVLDKVRFLKRMGFERR 408
           +KF +DP   +  ++  +GLGFS+ T  +VLE  P VI   E  +  +++FL  +G  R 
Sbjct: 105 KKFQIDPDRFNETLKVLKGLGFSESTTRRVLEGFPGVIALKECEIHRRIQFLMAIGIPRD 164

Query: 407 GVDWVFGKFPAVLSFGMENRLIPLLSEFKDLGHSRGEVKKEIVRDPRVLGLEVGELSQCL 228
           GVD VF  FP VL FG+ENRL+PLL+EFKDLG S   V+KEI+R+PR+LG+EVGELS+CL
Sbjct: 165 GVDRVFNSFPEVLGFGIENRLMPLLNEFKDLGFSEELVRKEIIREPRILGMEVGELSRCL 224

Query: 227 RMLRSLKCRFSVKEEIFKEGTFRAGYEVKLRVDCLCKYGLIRREAFRILWREPRVILYDM 48
            ++RSLKCR  +K +IF +G FRAG+EVKLRVDCLCK+ LIRREAF+ILW+EPRVILY++
Sbjct: 225 DLIRSLKCREPIKLKIFSKGAFRAGFEVKLRVDCLCKHRLIRREAFKILWKEPRVILYEI 284

Query: 47  KDIERKIDFLL 15
            DIE+KIDF++
Sbjct: 285 DDIEKKIDFIV 295


>ref|XP_002265430.1| PREDICTED: uncharacterized protein LOC100256963 [Vitis vinifera]
           gi|297734077|emb|CBI15324.3| unnamed protein product
           [Vitis vinifera]
          Length = 451

 Score =  229 bits (584), Expect = 3e-58
 Identities = 107/195 (54%), Positives = 149/195 (76%)
 Frame = -2

Query: 587 RKFDLDPCDVSCWVESFRGLGFSDDTVCKVLEVNPMVIMASEERVLDKVRFLKRMGFERR 408
           R+F+LDP DVS  V+  +GLGFSD TV ++LE  P VIM++E  +  K++FL  +G    
Sbjct: 145 RRFELDPDDVSRCVKVLKGLGFSDGTVDRILEEFPRVIMSNESEIQRKIQFLLGIGIPES 204

Query: 407 GVDWVFGKFPAVLSFGMENRLIPLLSEFKDLGHSRGEVKKEIVRDPRVLGLEVGELSQCL 228
           G+D +F   P +L  G+E+RL PLL EF  LG S   V++EI R+PR+LG+E+GE+S+CL
Sbjct: 205 GIDGIFHSLPGILGLGIEDRLEPLLDEFGKLGFSEDVVRREISREPRMLGMELGEMSRCL 264

Query: 227 RMLRSLKCRFSVKEEIFKEGTFRAGYEVKLRVDCLCKYGLIRREAFRILWREPRVILYDM 48
            ++ +LKCR  +KE+IF+EG  RAG+EVKLRVDCLC+YGLIRREAF +LW+EPRVI+Y++
Sbjct: 265 ELVGTLKCRVPIKEKIFREGALRAGFEVKLRVDCLCRYGLIRREAFEVLWKEPRVIIYEI 324

Query: 47  KDIERKIDFLLIEMK 3
           +DIE KI+FL+  M+
Sbjct: 325 EDIEEKIEFLVHRMR 339


>ref|XP_002514634.1| conserved hypothetical protein [Ricinus communis]
           gi|223546238|gb|EEF47740.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 450

 Score =  203 bits (517), Expect = 2e-50
 Identities = 97/195 (49%), Positives = 138/195 (70%)
 Frame = -2

Query: 587 RKFDLDPCDVSCWVESFRGLGFSDDTVCKVLEVNPMVIMASEERVLDKVRFLKRMGFERR 408
           ++F +DP +        +GL FS  T+ +VLE  P VI      +  ++ FL R G  + 
Sbjct: 143 KRFQIDPDEFEKNANVLKGLSFSQGTIRRVLEDFPGVITMKRSEIYSRIEFLMRTGIPKD 202

Query: 407 GVDWVFGKFPAVLSFGMENRLIPLLSEFKDLGHSRGEVKKEIVRDPRVLGLEVGELSQCL 228
            V+ +F  FP  L FG++NRL+PL+ EF+ LG SR  V KEI ++P++LG+E+GELS+CL
Sbjct: 203 EVESIFSSFPLALGFGIKNRLMPLIDEFEGLGFSRELVIKEIKKEPQILGMELGELSRCL 262

Query: 227 RMLRSLKCRFSVKEEIFKEGTFRAGYEVKLRVDCLCKYGLIRREAFRILWREPRVILYDM 48
            +L SLKCR  +K +I  +G FRAG+EVKL+VD LCK+GLIRREAF++LW+EPRVI+YD+
Sbjct: 263 DLLNSLKCREPIKLKILSDGAFRAGFEVKLKVDYLCKHGLIRREAFKVLWKEPRVIIYDL 322

Query: 47  KDIERKIDFLLIEMK 3
           +DIE+KI FL+  M+
Sbjct: 323 EDIEKKIQFLVNTMR 337


>ref|NP_565080.1| Mitochondrial transcription termination factor family protein
           [Arabidopsis thaliana]
           gi|12323819|gb|AAG51878.1|AC079678_8 unknown protein;
           33994-35331 [Arabidopsis thaliana]
           gi|332197431|gb|AEE35552.1| Mitochondrial transcription
           termination factor family protein [Arabidopsis thaliana]
          Length = 445

 Score =  201 bits (511), Expect = 8e-50
 Identities = 96/181 (53%), Positives = 129/181 (71%)
 Frame = -2

Query: 548 VESFRGLGFSDDTVCKVLEVNPMVIMASEERVLDKVRFLKRMGFERRGVDWVFGKFPAVL 369
           V   + LGF D TV ++L   P V++ +E  +  K+ FL  +G  R  ++  F  FP VL
Sbjct: 151 VRVLKSLGFCDSTVSRILSSFPGVLLVNEIEIRRKIEFLVGIGIARDNIERFFHVFPEVL 210

Query: 368 SFGMENRLIPLLSEFKDLGHSRGEVKKEIVRDPRVLGLEVGELSQCLRMLRSLKCRFSVK 189
             G E RL PLL EF  +G S+ +VKKEI R+PRVLGLE+GEL +CL ++ +LKCR  ++
Sbjct: 211 GIGTETRLKPLLDEFMKMGFSKDDVKKEIAREPRVLGLELGELPRCLELINTLKCREVIR 270

Query: 188 EEIFKEGTFRAGYEVKLRVDCLCKYGLIRREAFRILWREPRVILYDMKDIERKIDFLLIE 9
             I  EG FRAG+EVKLRVDCLCKYGLIRR+AF+++W+EPRVILY+++DIE+KI+FL   
Sbjct: 271 VSIISEGAFRAGFEVKLRVDCLCKYGLIRRDAFKVVWKEPRVILYEIEDIEKKIEFLTNR 330

Query: 8   M 6
           M
Sbjct: 331 M 331


>ref|XP_004135745.1| PREDICTED: uncharacterized protein LOC101219782 [Cucumis sativus]
           gi|449515947|ref|XP_004165009.1| PREDICTED:
           uncharacterized protein LOC101227222 [Cucumis sativus]
          Length = 453

 Score =  197 bits (500), Expect = 1e-48
 Identities = 94/195 (48%), Positives = 135/195 (69%)
 Frame = -2

Query: 587 RKFDLDPCDVSCWVESFRGLGFSDDTVCKVLEVNPMVIMASEERVLDKVRFLKRMGFERR 408
           ++FDLDP      V+  +  G SD  V +VLE  P ++  +EE +L  + FL  +G  R 
Sbjct: 144 QRFDLDPSLFRRAVDLLKRFGISDAAVIRVLEDYPEIVFTNEEEILRTIEFLMGIGIRRD 203

Query: 407 GVDWVFGKFPAVLSFGMENRLIPLLSEFKDLGHSRGEVKKEIVRDPRVLGLEVGELSQCL 228
            +D V    P VL F +E RL  L+ EF  LG  +  + +EIVR+PR L  E+GE+S+C+
Sbjct: 204 EIDRVICSIPRVLGFRVEGRLRSLICEFNGLGFDQNVIAREIVREPRTLATELGEISRCV 263

Query: 227 RMLRSLKCRFSVKEEIFKEGTFRAGYEVKLRVDCLCKYGLIRREAFRILWREPRVILYDM 48
            +LR+LKCR S+KE IF+EG+FRA +EVK RVDCLCK+GLIR  AF++LW+EPR++ Y++
Sbjct: 264 ELLRNLKCRNSIKERIFREGSFRAAFEVKQRVDCLCKHGLIRTRAFKLLWKEPRLVTYEI 323

Query: 47  KDIERKIDFLLIEMK 3
           ++IE+KIDFL+ +MK
Sbjct: 324 ENIEKKIDFLIHKMK 338


Top