BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00027772
         (628 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABF99156.1| retrotransposon protein, putative, Ty1-copia subc...   164   2e-42
gb|AAM19019.1|AC084748_9 putative polyprotein [Oryza sativa Japo...   164   2e-42
gb|AAX96807.1| retrotransposon protein, putative, Ty1-copia sub-...   157   1e-41
gb|AAT69606.1| putative polyprotein [Oryza sativa Japonica Group...   159   1e-41
emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]         159   1e-41

>gb|ABF99156.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1413

 Score =  164 bits (415), Expect(2) = 2e-42
 Identities = 71/117 (60%), Positives = 94/117 (80%)
 Frame = -2

Query: 351  EPRRSKRAKVVKDFGSDFITYNVEDEPLTFRHAMDSSESRYWKGAVKSEIDSIVSNGTWE 172
            + R+SKR +VVK FG D+I Y V+D P T   A  S ++ YWK AV+SE+DSI+SNGTWE
Sbjct: 875  DTRKSKRQRVVKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSEMDSIMSNGTWE 934

Query: 171  LVDLPPGCSTIGCKWIFKRKINPDGSIDKYKAKLVAKGFRQREGIDYFDTYSPVARM 1
            +V+ P GC  +GCKW+FK+K+ PDG+I+KYKA+LVAKG+ Q+EG D+FDTYSPVAR+
Sbjct: 935  IVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARL 991



 Score = 34.3 bits (77), Expect(2) = 2e-42
 Identities = 22/60 (36%), Positives = 31/60 (51%)
 Frame = -3

Query: 617 INTIVEFRDATFFEDVFPMKTGIPLGTFDDPTHTSSSIPDHVERMTNVGGNPSSSSTPDE 438
           + TI+E RDATFFE+ FPMK       +   T +  ++  H E  T +  N     TP+E
Sbjct: 818 VGTILESRDATFFENEFPMK-------YTPSTSSKETVMPH-EHFTPIEHN---DQTPEE 866


>gb|AAM19019.1|AC084748_9 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1394

 Score =  164 bits (415), Expect(2) = 2e-42
 Identities = 71/117 (60%), Positives = 94/117 (80%)
 Frame = -2

Query: 351  EPRRSKRAKVVKDFGSDFITYNVEDEPLTFRHAMDSSESRYWKGAVKSEIDSIVSNGTWE 172
            + R+SKR +VVK FG D+I Y V+D P T   A  S ++ YWK AV+SE+DSI+SNGTWE
Sbjct: 856  DTRKSKRQRVVKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSEMDSIMSNGTWE 915

Query: 171  LVDLPPGCSTIGCKWIFKRKINPDGSIDKYKAKLVAKGFRQREGIDYFDTYSPVARM 1
            +V+ P GC  +GCKW+FK+K+ PDG+I+KYKA+LVAKG+ Q+EG D+FDTYSPVAR+
Sbjct: 916  IVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARL 972



 Score = 34.3 bits (77), Expect(2) = 2e-42
 Identities = 22/60 (36%), Positives = 31/60 (51%)
 Frame = -3

Query: 617 INTIVEFRDATFFEDVFPMKTGIPLGTFDDPTHTSSSIPDHVERMTNVGGNPSSSSTPDE 438
           + TI+E RDATFFE+ FPMK       +   T +  ++  H E  T +  N     TP+E
Sbjct: 799 VGTILESRDATFFENEFPMK-------YTPSTSSKETVMPH-EHFTPIEHN---DQTPEE 847


>gb|AAX96807.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77550001|gb|ABA92798.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1234

 Score =  157 bits (398), Expect(2) = 1e-41
 Identities = 68/116 (58%), Positives = 89/116 (76%)
 Frame = -2

Query: 348  PRRSKRAKVVKDFGSDFITYNVEDEPLTFRHAMDSSESRYWKGAVKSEIDSIVSNGTWEL 169
            PRRSKR +  K FG DF  Y V+D P +   A  S ++ YWK AV SE+DSI++NGTWE+
Sbjct: 751  PRRSKRQRTTKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVHSEMDSIIANGTWEV 810

Query: 168  VDLPPGCSTIGCKWIFKRKINPDGSIDKYKAKLVAKGFRQREGIDYFDTYSPVARM 1
             + P GC  +GCKW+FK+K+ PDG+I+KYKA+LVAKG+ Q+EG D+FDTYSPVAR+
Sbjct: 811  TERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARL 866



 Score = 38.1 bits (87), Expect(2) = 1e-41
 Identities = 24/60 (40%), Positives = 31/60 (51%)
 Frame = -3

Query: 617 INTIVEFRDATFFEDVFPMKTGIPLGTFDDPTHTSSSIPDHVERMTNVGGNPSSSSTPDE 438
           + TI+E RDATFFE  FPMK           TH+SSS P  +         PSS + P++
Sbjct: 693 VGTIMESRDATFFESFFPMK----------DTHSSSSQPSKI--------IPSSITPPEQ 734


>gb|AAT69606.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53749238|gb|AAU90098.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1320

 Score =  159 bits (403), Expect(2) = 1e-41
 Identities = 68/116 (58%), Positives = 90/116 (77%)
 Frame = -2

Query: 348  PRRSKRAKVVKDFGSDFITYNVEDEPLTFRHAMDSSESRYWKGAVKSEIDSIVSNGTWEL 169
            PRRSKR +  K FG DF  Y V+D P +   A  S ++ YWK AV+SE+DSI++NGTWE+
Sbjct: 766  PRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDANYWKEAVRSEMDSIIANGTWEV 825

Query: 168  VDLPPGCSTIGCKWIFKRKINPDGSIDKYKAKLVAKGFRQREGIDYFDTYSPVARM 1
             + P GC  +GCKW+FK+K+ PDG+I+KYKA+LVAKG+ Q+EG D+FDTYSPVAR+
Sbjct: 826  TERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARL 881



 Score = 35.8 bits (81), Expect(2) = 1e-41
 Identities = 22/60 (36%), Positives = 30/60 (50%)
 Frame = -3

Query: 617 INTIVEFRDATFFEDVFPMKTGIPLGTFDDPTHTSSSIPDHVERMTNVGGNPSSSSTPDE 438
           + TI+E RDATFFE  FPMK           TH+ S+ P  +         PSS + P++
Sbjct: 708 VGTIMESRDATFFESFFPMK----------DTHSGSNQPSEI--------IPSSITPPEQ 749


>emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]
          Length = 1320

 Score =  159 bits (401), Expect(2) = 1e-41
 Identities = 68/116 (58%), Positives = 90/116 (77%)
 Frame = -2

Query: 348  PRRSKRAKVVKDFGSDFITYNVEDEPLTFRHAMDSSESRYWKGAVKSEIDSIVSNGTWEL 169
            PRRSKR +  K FG DF  Y V+D P +   A  S ++ YWK AV+SE+DSI++NGTWE+
Sbjct: 766  PRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEV 825

Query: 168  VDLPPGCSTIGCKWIFKRKINPDGSIDKYKAKLVAKGFRQREGIDYFDTYSPVARM 1
             + P GC  +GCKW+FK+K+ PDG+I+KYKA+LVAKG+ Q+EG D+FDTYSPVAR+
Sbjct: 826  TERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARL 881



 Score = 36.6 bits (83), Expect(2) = 1e-41
 Identities = 22/60 (36%), Positives = 30/60 (50%)
 Frame = -3

Query: 617 INTIVEFRDATFFEDVFPMKTGIPLGTFDDPTHTSSSIPDHVERMTNVGGNPSSSSTPDE 438
           + TI+E RDATFFE  FPMK           TH+ S+ P  +         PSS + P++
Sbjct: 708 VGTIIESRDATFFESFFPMK----------DTHSGSNQPSEI--------IPSSITPPEQ 749