BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00027650
         (1531 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chlor...   528   e-147
ref|XP_002301949.1| predicted protein [Populus trichocarpa] gi|2...   518   e-144
ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chlor...   516   e-144
ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour...   513   e-143
ref|XP_003523282.1| PREDICTED: RNA pseudourine synthase 2, chlor...   488   e-135

>ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Vitis
            vinifera] gi|302141717|emb|CBI18920.3| unnamed protein
            product [Vitis vinifera]
          Length = 433

 Score =  528 bits (1359), Expect = e-147
 Identities = 271/379 (71%), Positives = 304/379 (80%), Gaps = 2/379 (0%)
 Frame = +3

Query: 6    NYAGVRLEESVNDVNSS--KLRLDTWISSRINGISRARVQSTIKSGLVTVNGRTIDKVSH 179
            NYAGVRLEE+V DVNS   KLRLD+WISSRI GISRARVQS+I+SGLV+VN R +DKVSH
Sbjct: 57   NYAGVRLEETVVDVNSDSGKLRLDSWISSRIIGISRARVQSSIRSGLVSVNDRIVDKVSH 116

Query: 180  KVRSGDKVSCTISELQPLKAEPEDIPLNIVYEDDHVLVVNKPAHMVVHPAPGNATGTLVN 359
             +R+GDKV+CTISELQPL+AEPEDIPL+IVYED+HVLVVNKPAHMVVHPAPGNA+GTLVN
Sbjct: 117  VIRAGDKVNCTISELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVN 176

Query: 360  GILHHCCLPVASLPIVDIPXXXXXXXXXXXXXXXXXXXXXKGLFSGLNEASIRPGIVHRL 539
            GILHHC LP  +LP  D                        G   G  E +IRPGIVHRL
Sbjct: 177  GILHHCSLPTVALPNRD--------SEEDDISDDEFNSFAAGQNCGTCETNIRPGIVHRL 228

Query: 540  DKGTSGLLLVAKDEHSHAHLSEQFKQHTIQRVYISLTCGVPSPASGRVDIPIGRDLTNRI 719
            DKGTSGLL+VAKDEHSHAHLSEQFK H+I RVYISLT GVP+P SGRV+IP+GRD  NRI
Sbjct: 229  DKGTSGLLVVAKDEHSHAHLSEQFKLHSIHRVYISLTSGVPTPLSGRVEIPVGRDPNNRI 288

Query: 720  RMAAVVGSSKCGKTRHAASRFRVIEILAGGGSALVEWRLETGRTHQIRAHAKYLRIPLLG 899
            RM AV G S  G+ RHAASR++VIEILA GGSALVEWRLETGRTHQIRAHAKYL IPLLG
Sbjct: 289  RMTAVPGPSNSGQARHAASRYKVIEILAAGGSALVEWRLETGRTHQIRAHAKYLGIPLLG 348

Query: 900  DEVYGGTKSMALDRLQQKNSCNLPGQLLQLISNLERPCLHALTLGFMHPHTGKEVHFSCL 1079
            DEVYGGTK+MAL  L+ +   +  GQL QL+S L+RPCLHA+ LGF HP TGK VHFSC 
Sbjct: 349  DEVYGGTKNMALSLLRPRIPSSHHGQLAQLVSRLDRPCLHAVALGFNHPKTGKNVHFSCQ 408

Query: 1080 PPADFAEVLSGLRSVNTEK 1136
            PP DFAE+LS LR ++TEK
Sbjct: 409  PPEDFAEILSWLRKISTEK 427


>ref|XP_002301949.1| predicted protein [Populus trichocarpa] gi|222843675|gb|EEE81222.1|
            predicted protein [Populus trichocarpa]
          Length = 444

 Score =  518 bits (1334), Expect = e-144
 Identities = 264/382 (69%), Positives = 308/382 (80%)
 Frame = +3

Query: 6    NYAGVRLEESVNDVNSSKLRLDTWISSRINGISRARVQSTIKSGLVTVNGRTIDKVSHKV 185
            NY+GV+LEESV D  S K RLD+WISSRI+GISRARVQS+IKSGLV+VNG+ IDKVSH V
Sbjct: 77   NYSGVKLEESV-DSKSGKSRLDSWISSRISGISRARVQSSIKSGLVSVNGKVIDKVSHNV 135

Query: 186  RSGDKVSCTISELQPLKAEPEDIPLNIVYEDDHVLVVNKPAHMVVHPAPGNATGTLVNGI 365
            ++GDKV+C ISELQPL+AEPE+IPL+IVYED++VLVVNKPAHMVVHPAPGNATGTLVNGI
Sbjct: 136  KAGDKVNCVISELQPLRAEPENIPLDIVYEDENVLVVNKPAHMVVHPAPGNATGTLVNGI 195

Query: 366  LHHCCLPVASLPIVDIPXXXXXXXXXXXXXXXXXXXXXKGLFSGLNEASIRPGIVHRLDK 545
            LHHC LP  S   V                        +GL S    AS+RPGIVHRLDK
Sbjct: 196  LHHCSLPTVSSQEV------------LSGAEDVSDDDDEGLCSSSYAASVRPGIVHRLDK 243

Query: 546  GTSGLLLVAKDEHSHAHLSEQFKQHTIQRVYISLTCGVPSPASGRVDIPIGRDLTNRIRM 725
            GTSGLL+VAKDEHSHAHLSEQFK HTI+RVY+SLTCGVP+P +GR+D+PIGRD++NRIRM
Sbjct: 244  GTSGLLVVAKDEHSHAHLSEQFKLHTIKRVYVSLTCGVPAPMAGRIDVPIGRDVSNRIRM 303

Query: 726  AAVVGSSKCGKTRHAASRFRVIEILAGGGSALVEWRLETGRTHQIRAHAKYLRIPLLGDE 905
            AA+V  ++ G+ RHAASR++VIEILAGGGSALVEWRLETGRTHQIRAHAKY+ IPLLGDE
Sbjct: 304  AAIVEPNR-GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDE 362

Query: 906  VYGGTKSMALDRLQQKNSCNLPGQLLQLISNLERPCLHALTLGFMHPHTGKEVHFSCLPP 1085
            VYGGT++MAL  L+ +   +   QL   +S LERPCLHAL LGF HP TGKE+HFSC PP
Sbjct: 363  VYGGTQNMALSLLRSRTQPSCHRQLSLSLSGLERPCLHALALGFTHPCTGKEIHFSCPPP 422

Query: 1086 ADFAEVLSGLRSVNTEKIANME 1151
             DF E+LS LR + TEK++  E
Sbjct: 423  PDFTEILSQLREMGTEKLSFKE 444


>ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cucumis
            sativus]
          Length = 453

 Score =  516 bits (1328), Expect = e-144
 Identities = 257/386 (66%), Positives = 307/386 (79%)
 Frame = +3

Query: 6    NYAGVRLEESVNDVNSSKLRLDTWISSRINGISRARVQSTIKSGLVTVNGRTIDKVSHKV 185
            NYAG RLEE+V DVN  K+RLD+WIS RINGISRARVQS+I++GLV+VNGR IDKVSH V
Sbjct: 60   NYAGTRLEETV-DVNPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRVIDKVSHNV 118

Query: 186  RSGDKVSCTISELQPLKAEPEDIPLNIVYEDDHVLVVNKPAHMVVHPAPGNATGTLVNGI 365
            ++GD ++CTISELQPL+AEPEDI L+IVYED+HVLVVNKPAHMVVHPAPGNATGTLVN I
Sbjct: 119  KAGDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAI 178

Query: 366  LHHCCLPVASLPIVDIPXXXXXXXXXXXXXXXXXXXXXKGLFSGLNEASIRPGIVHRLDK 545
            L+HC LP+ +    +                        G+FS ++EA IRPGIVHRLDK
Sbjct: 179  LNHCSLPMVATSTGENESDSDVSDDEFSSI---------GVFSRVSEAPIRPGIVHRLDK 229

Query: 546  GTSGLLLVAKDEHSHAHLSEQFKQHTIQRVYISLTCGVPSPASGRVDIPIGRDLTNRIRM 725
            GTSGLL+VAKDEHSHAHLS QFKQH+I+RVYISLTCGVP   +GR+++PI RD  NRIRM
Sbjct: 230  GTSGLLVVAKDEHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEMPICRDPNNRIRM 289

Query: 726  AAVVGSSKCGKTRHAASRFRVIEILAGGGSALVEWRLETGRTHQIRAHAKYLRIPLLGDE 905
             A+ G+      ++AASR+ V+EILA GGS+LVEWRLETGRTHQIRAHAKY+ IPLLGDE
Sbjct: 290  TAIDGTKNNPHAKYAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDE 349

Query: 906  VYGGTKSMALDRLQQKNSCNLPGQLLQLISNLERPCLHALTLGFMHPHTGKEVHFSCLPP 1085
            VYGGTKSMA+  L+ + S N  GQL+QL+S+LERPCLHALTLGF+HPHTGK + FSC PP
Sbjct: 350  VYGGTKSMAMSLLRTRASSNCHGQLMQLVSSLERPCLHALTLGFVHPHTGKNIRFSCPPP 409

Query: 1086 ADFAEVLSGLRSVNTEKIANMEKVHH 1163
             DF E+LS LR + T+K+  +  V+H
Sbjct: 410  TDFTEILSQLREIGTQKVLTIRLVYH 435


>ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 2,
            chloroplastic-like [Cucumis sativus]
          Length = 452

 Score =  513 bits (1320), Expect = e-143
 Identities = 257/386 (66%), Positives = 308/386 (79%)
 Frame = +3

Query: 6    NYAGVRLEESVNDVNSSKLRLDTWISSRINGISRARVQSTIKSGLVTVNGRTIDKVSHKV 185
            NYAG RLEE+V DVN  K+RLD+WIS RINGISRARVQS+I++GLV+VNGR IDKVSH V
Sbjct: 60   NYAGTRLEETV-DVNPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRVIDKVSHNV 118

Query: 186  RSGDKVSCTISELQPLKAEPEDIPLNIVYEDDHVLVVNKPAHMVVHPAPGNATGTLVNGI 365
            ++GD ++CTISELQPL+AEPEDI L+IVYED+HVLVVNKPAHMVVHPAPGNATGTLVN I
Sbjct: 119  KAGDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAI 178

Query: 366  LHHCCLPVASLPIVDIPXXXXXXXXXXXXXXXXXXXXXKGLFSGLNEASIRPGIVHRLDK 545
            L+HC LP+ +    +                        G+FS ++EA IRPGIVHRLDK
Sbjct: 179  LNHCSLPMVATSTGENESDSDVSDDEFSSI---------GVFSRVSEAPIRPGIVHRLDK 229

Query: 546  GTSGLLLVAKDEHSHAHLSEQFKQHTIQRVYISLTCGVPSPASGRVDIPIGRDLTNRIRM 725
            GTSGLL+VAKDEHSHAHLS QFKQH+I+RVYISLTCGVP   +GR+++PI RD  NRIRM
Sbjct: 230  GTSGLLVVAKDEHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEMPICRDPNNRIRM 289

Query: 726  AAVVGSSKCGKTRHAASRFRVIEILAGGGSALVEWRLETGRTHQIRAHAKYLRIPLLGDE 905
             A+ G++     ++AASR+ V+EILA GGS+LVEWRLETGRTHQIRAHAKY+ IPLLGDE
Sbjct: 290  TAIDGTNN-PHAKYAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDE 348

Query: 906  VYGGTKSMALDRLQQKNSCNLPGQLLQLISNLERPCLHALTLGFMHPHTGKEVHFSCLPP 1085
            VYGGTKSMA+  L+ + S N  GQL+QL+S+LERPCLHALTLGF+HPHTGK + FSC PP
Sbjct: 349  VYGGTKSMAMSLLRTRASSNCHGQLMQLVSSLERPCLHALTLGFVHPHTGKNIRFSCPPP 408

Query: 1086 ADFAEVLSGLRSVNTEKIANMEKVHH 1163
             DF E+LS LR + T+K+  +  V+H
Sbjct: 409  TDFTEILSQLREIGTQKVLTIRLVYH 434


>ref|XP_003523282.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Glycine
            max]
          Length = 450

 Score =  488 bits (1257), Expect = e-135
 Identities = 245/382 (64%), Positives = 298/382 (78%), Gaps = 3/382 (0%)
 Frame = +3

Query: 6    NYAGVRLEESVND-VNSSKLRLDTWISSRINGISRARVQSTIKSGLVTVNGRTIDKVSHK 182
            N++GVRLEE+V+  + S KLRLD WISSRINGISRARVQS+IKSGLV VNGR +DKVS  
Sbjct: 63   NFSGVRLEEAVDSRIGSGKLRLDNWISSRINGISRARVQSSIKSGLVHVNGRVVDKVSFN 122

Query: 183  VRSGDKVSCTISELQPLKAEPEDIPLNIVYEDDHVLVVNKPAHMVVHPAPGNATGTLVNG 362
            V+SGD++ CTI+ELQ L+A P++IPL+IVYED+HVLV+NKPAHMVVHPAPGN +GTLVNG
Sbjct: 123  VKSGDEIKCTIAELQNLRAVPQNIPLDIVYEDEHVLVINKPAHMVVHPAPGNTSGTLVNG 182

Query: 363  ILHHCCLPVASLPIVDIPXXXXXXXXXXXXXXXXXXXXXKGLFSGLNEAS--IRPGIVHR 536
            ILHHC LP       D                       +GL S L+ AS  IRPGIVHR
Sbjct: 183  ILHHCNLPNVEFS-KDEALSDTEDSDDEFNSYISLASSCEGLNSRLSVASNSIRPGIVHR 241

Query: 537  LDKGTSGLLLVAKDEHSHAHLSEQFKQHTIQRVYISLTCGVPSPASGRVDIPIGRDLTNR 716
            LDKGTSGLL+VAKDEHSH  LSEQFKQ TI+R+Y+SLT GVP+P +GRV++P+GRD  NR
Sbjct: 242  LDKGTSGLLVVAKDEHSHMKLSEQFKQRTIKRLYVSLTAGVPTPVAGRVEVPVGRDTNNR 301

Query: 717  IRMAAVVGSSKCGKTRHAASRFRVIEILAGGGSALVEWRLETGRTHQIRAHAKYLRIPLL 896
            IRM AV G     K R+AASR++VIEILAGG  +LVEW+LETGRTHQIRAHAKYL +PLL
Sbjct: 302  IRMTAVTGPVNSKKARYAASRYKVIEILAGGSCSLVEWKLETGRTHQIRAHAKYLGVPLL 361

Query: 897  GDEVYGGTKSMALDRLQQKNSCNLPGQLLQLISNLERPCLHALTLGFMHPHTGKEVHFSC 1076
            GDE+YGGTKSM L  L+ +   +L  ++++++S L+RPCLHA TLGF HPHTG++VHFSC
Sbjct: 362  GDELYGGTKSMVLSLLRPRTPISLHSKIVKMVSRLDRPCLHAWTLGFQHPHTGEQVHFSC 421

Query: 1077 LPPADFAEVLSGLRSVNTEKIA 1142
             PPADFAE+LS LR + +E ++
Sbjct: 422  EPPADFAEILSQLRRIGSETVS 443