BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00027608
         (991 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI32318.3| unnamed protein product [Vitis vinifera]              452   e-125
ref|XP_002271258.1| PREDICTED: exosome complex component rrp4-li...   448   e-123
ref|XP_003554237.1| PREDICTED: exosome complex component RRP4-li...   440   e-121
ref|XP_004144644.1| PREDICTED: exosome complex component RRP4-li...   437   e-120
ref|XP_003609733.1| Exosome complex exonuclease RRP4 [Medicago t...   428   e-117

>emb|CBI32318.3| unnamed protein product [Vitis vinifera]
          Length = 320

 Score =  452 bits (1163), Expect = e-125
 Identities = 225/303 (74%), Positives = 265/303 (87%), Gaps = 4/303 (1%)
 Frame = -3

Query: 905 LPLNQTQKLRLEKALELLDSLSAGANSNACVTVADTILVDHQDGLLKGHGTTDFDGELVA 726
           L LNQTQKLRL++ALE L+SLS+ +NSNA V VADTI V+++DG+LKGHGT D DGE+VA
Sbjct: 6   LSLNQTQKLRLQRALEQLESLSSKSNSNASVAVADTIPVNYEDGVLKGHGTLDLDGEVVA 65

Query: 725 TVCGVVERVNKLVYVRSLRARYKPEIGDIIVGRVIEVAPKRWRLEINFTQDAVLMLSSMT 546
           T+CGVVERVNKLVY+R+LRARYKPE GDIIVGRV E+APKRWRL+INF+QDAVLMLSSM 
Sbjct: 66  TLCGVVERVNKLVYIRTLRARYKPETGDIIVGRVTEIAPKRWRLDINFSQDAVLMLSSMN 125

Query: 545 LRDGIQRRQTADDELNMRSIFVENDVICAEVRGFQHDGSLHLQARSQKYGKLERGQLLTV 366
           L DGIQRR+TA DELNMRSIF END++CAEVRGFQHDGSLHLQARSQKYGKLERGQ+LT+
Sbjct: 126 LPDGIQRRRTAVDELNMRSIFEENDIVCAEVRGFQHDGSLHLQARSQKYGKLERGQVLTI 185

Query: 365 PPYLVKRRKQHFHYLEQYKIDLIVGCNGFIWVGEHVETKDDMVEDQVTESEQQN--ASED 192
            PYLVKRRKQH HYLE++ +DLI+GCNGFIWVGEHVE K  ++EDQ  ++EQ N  +S+ 
Sbjct: 186 SPYLVKRRKQHLHYLEEFGVDLILGCNGFIWVGEHVEAKGILIEDQTDKAEQLNTKSSKR 245

Query: 191 TYTPVEIRENICRAANAVRVLCTLGFNITADVIMETVKLSNS--IDIHDMLGAEFCVLVA 18
           TYT +E R+NICR ANAVRVL  LGF++T +VI ETV LS+S  +DIH+MLG+EF VLVA
Sbjct: 246 TYTSLETRQNICRIANAVRVLANLGFSVTVEVIKETVNLSSSLNLDIHEMLGSEFYVLVA 305

Query: 17  ESE 9
           E E
Sbjct: 306 EGE 308


>ref|XP_002271258.1| PREDICTED: exosome complex component rrp4-like [Vitis vinifera]
          Length = 330

 Score =  448 bits (1152), Expect = e-123
 Identities = 225/313 (71%), Positives = 263/313 (84%), Gaps = 14/313 (4%)
 Frame = -3

Query: 905 LPLNQTQKLRLEKALELLDSLSAGANSNACVTVADTILVDHQDGLLKGHGTTDFDGELVA 726
           L LNQTQKLRL++ALE L+SLS+ +NSNA V VADTI V+++DG+LKGHGT D DGE+VA
Sbjct: 6   LSLNQTQKLRLQRALEQLESLSSKSNSNASVAVADTIPVNYEDGVLKGHGTLDLDGEVVA 65

Query: 725 TVCGVVERVNKLVYVRSLRARYKPEIGDIIVGRVIEVAPKRWRLEINFTQDAVLMLSSMT 546
           T+CGVVERVNKLVY+R+LRARYKPE GDIIVGRV E+APKRWRL+INF+QDAVLMLSSM 
Sbjct: 66  TLCGVVERVNKLVYIRTLRARYKPETGDIIVGRVTEIAPKRWRLDINFSQDAVLMLSSMN 125

Query: 545 LRDGIQRRQTADDELNMRSIFVENDVICAEVRGFQHDGSLHLQARSQKYGKLERGQLLTV 366
           L DGIQRR+TA DELNMRSIF END++CAEVRGFQHDGSLHLQARSQKYGKLERGQ+LT+
Sbjct: 126 LPDGIQRRRTAVDELNMRSIFEENDIVCAEVRGFQHDGSLHLQARSQKYGKLERGQVLTI 185

Query: 365 PPYLVKRRKQHFHYLEQYKIDLIVGCNGFIWVGEHVETKDDMVEDQVTESEQQNA----- 201
            PYLVKRRKQH HYLE++ +DLI+GCNGFIWVGEHVE K  ++EDQ  ++EQ N      
Sbjct: 186 SPYLVKRRKQHLHYLEEFGVDLILGCNGFIWVGEHVEAKGILIEDQTDKAEQLNTKSSSS 245

Query: 200 -------SEDTYTPVEIRENICRAANAVRVLCTLGFNITADVIMETVKLSNS--IDIHDM 48
                   E TYT +E R+NICR ANAVRVL  LGF++T +VI ETV LS+S  +DIH+M
Sbjct: 246 TFMSLEEQERTYTSLETRQNICRIANAVRVLANLGFSVTVEVIKETVNLSSSLNLDIHEM 305

Query: 47  LGAEFCVLVAESE 9
           LG+EF VLVAE E
Sbjct: 306 LGSEFYVLVAEGE 318


>ref|XP_003554237.1| PREDICTED: exosome complex component RRP4-like [Glycine max]
          Length = 327

 Score =  440 bits (1132), Expect = e-121
 Identities = 223/320 (69%), Positives = 267/320 (83%), Gaps = 13/320 (4%)
 Frame = -3

Query: 923 MREIESLPLNQTQKLRLEKALELLDSLSAGANSNACVTVADTILVDHQDGLLKGHGTTDF 744
           MREI+ LPL+QTQK+RL+KALE L+SLS   NS+A V +AD+I V+H+DG+LKGHGT D 
Sbjct: 1   MREIQ-LPLSQTQKVRLQKALEQLESLSTKVNSDASVIIADSIHVNHEDGVLKGHGTADL 59

Query: 743 DGELVATVCGVVERVNKLVYVRSLRARYKPEIGDIIVGRVIEVAPKRWRLEINFTQDAVL 564
           +GE+VAT+CGVVERVNKLVYVR+LR+RYKPE+GDI++GRV+EVA KRWRLEIN+ QDAVL
Sbjct: 60  NGEVVATLCGVVERVNKLVYVRALRSRYKPEVGDIVIGRVVEVAQKRWRLEINYNQDAVL 119

Query: 563 MLSSMTLRDGIQRRQTADDELNMRSIFVENDVICAEVRGFQHDGSLHLQARSQKYGKLER 384
           +LSSM + DG+QRR+TA DELNMR IF ENDV+CAEVRGFQHDG LHLQARS+KYGKL R
Sbjct: 120 LLSSMNMPDGVQRRRTAVDELNMRCIFEENDVVCAEVRGFQHDG-LHLQARSRKYGKLNR 178

Query: 383 GQLLTVPPYLVKRRKQHFHYLEQYKIDLIVGCNGFIWVGEHVETKDDMVEDQVTESEQQ- 207
           GQLLTVPPYLVKR+KQHFH+LE++ IDLI+GCNGFIWVGEHVE KDDM+EDQV++S+ Q 
Sbjct: 179 GQLLTVPPYLVKRQKQHFHHLEEFGIDLILGCNGFIWVGEHVEAKDDMIEDQVSQSDSQV 238

Query: 206 ----------NASEDTYTPVEIRENICRAANAVRVLCTLGFNITADVIMETVKLSNS--I 63
                        E  YT +E R+ I RAANAVRVL TLGFNIT ++I   + LS S  +
Sbjct: 239 LFPNKNCVSLEEQEKNYTILETRKYISRAANAVRVLSTLGFNITLEIIKGIIDLSLSMNL 298

Query: 62  DIHDMLGAEFCVLVAESEVD 3
           DIHDMLG+EFCVLVAE E +
Sbjct: 299 DIHDMLGSEFCVLVAEKEAE 318


>ref|XP_004144644.1| PREDICTED: exosome complex component RRP4-like [Cucumis sativus]
          Length = 327

 Score =  437 bits (1125), Expect = e-120
 Identities = 223/314 (71%), Positives = 262/314 (83%), Gaps = 13/314 (4%)
 Frame = -3

Query: 905 LPLNQTQKLRLEKALELLDSLSAGANSNACVTVADTILVDHQDGLLKGHGTTDFDGELVA 726
           L LN TQK+RLE+A E L SLS+  NS+A V VADTI ++++DG+LKGHGT D +GE+VA
Sbjct: 6   LSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLNGEVVA 65

Query: 725 TVCGVVERVNKLVYVRSLRARYKPEIGDIIVGRVIEVAPKRWRLEINFTQDAVLMLSSMT 546
           ++CGVVERVNKL+YVR+LRARYKPE+GDI+VGRV EVAPKRWRL+IN+ QDAVLMLSSM 
Sbjct: 66  SICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLMLSSMN 125

Query: 545 LRDGIQRRQTADDELNMRSIFVENDVICAEVRGFQHDGSLHLQARSQKYGKLERGQLLTV 366
           L DGIQRR+TA DELNMRSIF ENDVICAEVRG QHDG LHLQARSQKYGKLERGQLLTV
Sbjct: 126 LPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQLLTV 184

Query: 365 PPYLVKRRKQHFHYLEQYKIDLIVGCNGFIWVGEHVETK--DDMVEDQVTESEQQ----- 207
            PYL+KRRKQHFH+LEQY IDLI+GCNGFIW+GEHV+ K  D M+EDQV + EQ+     
Sbjct: 185 SPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQKGSKFE 244

Query: 206 ----NASEDTYTPVEIRENICRAANAVRVLCTLGFNITADVIMETVKLSNS--IDIHDML 45
               N  ++ YTP+E R+NICR ANA+RVL TLGF +T +VIME V LS S  ID+H+ML
Sbjct: 245 GTFGNQVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDVHEML 304

Query: 44  GAEFCVLVAESEVD 3
           G+EFCVL AE EV+
Sbjct: 305 GSEFCVLTAEKEVE 318


>ref|XP_003609733.1| Exosome complex exonuclease RRP4 [Medicago truncatula]
           gi|217074186|gb|ACJ85453.1| unknown [Medicago
           truncatula] gi|355510788|gb|AES91930.1| Exosome complex
           exonuclease RRP4 [Medicago truncatula]
           gi|388516977|gb|AFK46550.1| unknown [Medicago
           truncatula]
          Length = 327

 Score =  428 bits (1100), Expect = e-117
 Identities = 218/314 (69%), Positives = 259/314 (82%), Gaps = 13/314 (4%)
 Frame = -3

Query: 905 LPLNQTQKLRLEKALELLDSLSAGANSNACVTVADTILVDHQDGLLKGHGTTDFDGELVA 726
           L L+QTQKLRL+KALE L+SLS+  NS++ VT+AD+I V+H+DG+LKGHGT D DGE+VA
Sbjct: 6   LQLSQTQKLRLQKALEHLESLSSKVNSDSSVTIADSIPVNHEDGVLKGHGTADLDGEVVA 65

Query: 725 TVCGVVERVNKLVYVRSLRARYKPEIGDIIVGRVIEVAPKRWRLEINFTQDAVLMLSSMT 546
           T+CGVVERVNKLVYVR+LR+RYKPE+GDI++GRVIEVA KRWRL+IN++Q+A LMLS+M 
Sbjct: 66  TLCGVVERVNKLVYVRALRSRYKPEVGDIVIGRVIEVAQKRWRLDINYSQNAYLMLSAMN 125

Query: 545 LRDGIQRRQTADDELNMRSIFVENDVICAEVRGFQHDGSLHLQARSQKYGKLERGQLLTV 366
           + DG+QRR+TA DELNMR IF E DVICAEVRGFQHDG LHLQARSQKYGKL  GQLLTV
Sbjct: 126 MPDGVQRRRTALDELNMRCIFEEADVICAEVRGFQHDG-LHLQARSQKYGKLSTGQLLTV 184

Query: 365 PPYLVKRRKQHFHYLEQYKIDLIVGCNGFIWVGEHVETKDDMVEDQVTESEQQ------- 207
            PYLVKR+KQHFH+LEQY IDLI+GCNGFIWVGEHVE +DDMVEDQV +S+ Q       
Sbjct: 185 TPYLVKRQKQHFHHLEQYGIDLIIGCNGFIWVGEHVEVRDDMVEDQVNQSDPQVLTPNKN 244

Query: 206 ----NASEDTYTPVEIRENICRAANAVRVLCTLGFNITADVIMETVKLSNS--IDIHDML 45
                  E  YT +E R+ ICRAANAVR L TLGF IT+++I   + LS S  +DIHDML
Sbjct: 245 SVSLEEQEKKYTALETRKYICRAANAVRGLSTLGFIITSEIIKGVIDLSLSANLDIHDML 304

Query: 44  GAEFCVLVAESEVD 3
           G+EFCVLVAE E +
Sbjct: 305 GSEFCVLVAEKEAE 318