BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00027519
         (1315 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAO72413.1| gag-pol polyprotein [Oryza sativa Japonica Group]...   309   5e-98
gb|ABB47537.2| retrotransposon protein, putative, unclassified [...   302   2e-95
emb|CAE04422.2| OSJNBb0040D15.12 [Oryza sativa Japonica Group]        301   2e-94
gb|ABH07409.1| putative pol polyprotein [Brassica oleracea var. ...   291   1e-91
gb|AAC95173.1| putative retroelement pol polyprotein [Arabidopsi...   271   2e-86

>gb|AAO72413.1| gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|108710383|gb|ABF98178.1| retrotransposon protein,
            putative, unclassified [Oryza sativa Japonica Group]
          Length = 1339

 Score =  309 bits (791), Expect(2) = 5e-98
 Identities = 137/257 (53%), Positives = 187/257 (72%)
 Frame = +3

Query: 15   LMKVKRSDNRLYKIILETSESICLMSKMDESSWLWQTRLGHVNFQAMVLMSENKMAYGLP 194
            +MKV+RS NRLY+I L+ +  +CL++ +D+ +WLW  RLGHVNF A+ L+ + +MA G+P
Sbjct: 414  VMKVRRSSNRLYRIELQLASPVCLLASLDDPAWLWHARLGHVNFHALKLLVDKEMAAGVP 473

Query: 195  KIVKPKEICTGCLMSKQTRKSFPCQASFHATQPLELIHGDLCGPITPTTKAGNRYFLLLV 374
             +  P ++C  CL++KQ R+ FP  A++ A  PLEL+H DLCGPITP+T  GNRYF+L+V
Sbjct: 474  AVHHPNQLCQACLVAKQVRQPFPGMANYLAEAPLELLHMDLCGPITPSTFTGNRYFMLIV 533

Query: 375  DDFSRAMWTYMLTKKDEALDAFKNFRAMXXXXXXXXXXXPRTDRGGEFCSKKFTSYCEDT 554
            DDFS  MW +++  KD+AL AF+ F+ +            RTDRGGEF S +F   C+  
Sbjct: 534  DDFSHWMWVFVIKSKDQALAAFEKFKPLAENTAGRTIKTLRTDRGGEFLSGEFARVCDAA 593

Query: 555  GITRHFTAPYTPQQNGVVERRNRTIVAMTRSFLKEMQLPFTLWGEAIRHSNYVLNRLPTR 734
            GI RH T PY+PQQNGVVERRNRT++AM RS LK M +P  +WGEA+RH+ ++LNRLPT+
Sbjct: 594  GIERHLTVPYSPQQNGVVERRNRTVMAMARSLLKGMSVPGRMWGEAVRHAVFLLNRLPTK 653

Query: 735  ALSGKTPYEAWTGNKPH 785
            A+  +TP+EAWTG KPH
Sbjct: 654  AMGNRTPFEAWTGKKPH 670



 Score = 77.0 bits (188), Expect(2) = 5e-98
 Identities = 37/61 (60%), Positives = 44/61 (72%)
 Frame = +1

Query: 781 HISHLRVFGCVAYMKVPSVHTTKLDNRRKKVVYLGREPGMKACRLYDPEVERLIVSRDVV 960
           H+ HLRVFGC A+ KV + H  KLD+R   VVYLG E G KA RL+DP   ++IVSRDVV
Sbjct: 670 HLGHLRVFGCTAHAKVTAPHLKKLDDRSNPVVYLGVEEGSKAHRLFDPRRRQIIVSRDVV 729

Query: 961 F 963
           F
Sbjct: 730 F 730


>gb|ABB47537.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1172

 Score =  302 bits (773), Expect(2) = 2e-95
 Identities = 134/257 (52%), Positives = 184/257 (71%)
 Frame = +3

Query: 15   LMKVKRSDNRLYKIILETSESICLMSKMDESSWLWQTRLGHVNFQAMVLMSENKMAYGLP 194
            +MKV+R+ NRLY+I L+ +  +CL++ +D  +WLW  R+GHVNF A+ L+ + +MA G+P
Sbjct: 308  VMKVRRTSNRLYRIELQLASQVCLLASLDNPAWLWHARIGHVNFHALKLLVDKEMASGVP 367

Query: 195  KIVKPKEICTGCLMSKQTRKSFPCQASFHATQPLELIHGDLCGPITPTTKAGNRYFLLLV 374
             +  P ++C  CL++KQ R+ FP  A++ A  PLEL+H DLCGPITP+T AGNRYF+L+V
Sbjct: 368  TVHHPNQLCQACLVAKQVRQPFPGMANYRAEAPLELLHMDLCGPITPSTFAGNRYFMLIV 427

Query: 375  DDFSRAMWTYMLTKKDEALDAFKNFRAMXXXXXXXXXXXPRTDRGGEFCSKKFTSYCEDT 554
            DDFS  MW +++  KD+AL  F+ F+ +            RTDRGGEF S KF   C+  
Sbjct: 428  DDFSNWMWVFVIKLKDQALAVFEKFKPLAKNTVGRTIKTLRTDRGGEFLSGKFARVCDAA 487

Query: 555  GITRHFTAPYTPQQNGVVERRNRTIVAMTRSFLKEMQLPFTLWGEAIRHSNYVLNRLPTR 734
             I RH TAPY+PQQN VVERRNRT++AM RS LK M +P  +WGEA+RH+ ++LN LPT+
Sbjct: 488  SIERHLTAPYSPQQNDVVERRNRTVMAMARSLLKGMSVPGRMWGEAVRHAIFLLNWLPTK 547

Query: 735  ALSGKTPYEAWTGNKPH 785
            A+  +TP+EAWTG KPH
Sbjct: 548  AMGNRTPFEAWTGKKPH 564



 Score = 75.1 bits (183), Expect(2) = 2e-95
 Identities = 36/61 (59%), Positives = 43/61 (70%)
 Frame = +1

Query: 781 HISHLRVFGCVAYMKVPSVHTTKLDNRRKKVVYLGREPGMKACRLYDPEVERLIVSRDVV 960
           H+ HLRVFGC A+ KV + H  KLD+R    VYLG E G KA RL+DP   ++IVSRDVV
Sbjct: 564 HLGHLRVFGCTAHAKVTAPHLKKLDDRSNPFVYLGVEEGSKAHRLFDPRRRQIIVSRDVV 623

Query: 961 F 963
           F
Sbjct: 624 F 624


>emb|CAE04422.2| OSJNBb0040D15.12 [Oryza sativa Japonica Group]
          Length = 893

 Score =  301 bits (772), Expect(2) = 2e-94
 Identities = 134/257 (52%), Positives = 185/257 (71%)
 Frame = +3

Query: 15   LMKVKRSDNRLYKIILETSESICLMSKMDESSWLWQTRLGHVNFQAMVLMSENKMAYGLP 194
            +MKV+R+ NRLY+I L+ +  +CL++ +D+ +WLW  RLGHVNF A+ L+ + +M  G+P
Sbjct: 274  VMKVRRTSNRLYRIELQLASPVCLLASLDDPAWLWHARLGHVNFHALKLLVDKEMVAGVP 333

Query: 195  KIVKPKEICTGCLMSKQTRKSFPCQASFHATQPLELIHGDLCGPITPTTKAGNRYFLLLV 374
             +  P ++C  CL++KQ R+SFP  A++ A  PLEL+H DLCGPITP+T AGNRYF+L+V
Sbjct: 334  AVHHPNQLCQACLVAKQVRQSFPGMANYRAEAPLELLHMDLCGPITPSTFAGNRYFMLIV 393

Query: 375  DDFSRAMWTYMLTKKDEALDAFKNFRAMXXXXXXXXXXXPRTDRGGEFCSKKFTSYCEDT 554
            DDFSR MW +++  KD+AL A + F+ +            RTDRG EF S +F   C+  
Sbjct: 394  DDFSRWMWVFVIKSKDQALAASEKFKPLAENTAGRTIKTLRTDRGSEFLSGEFARVCDAA 453

Query: 555  GITRHFTAPYTPQQNGVVERRNRTIVAMTRSFLKEMQLPFTLWGEAIRHSNYVLNRLPTR 734
            GI RH TAPY+PQQNGVVE RNRT++AM RS LK M +P  +WGEA+RH+ ++LNRLPT+
Sbjct: 454  GIERHLTAPYSPQQNGVVEHRNRTVMAMARSLLKGMSVPGRMWGEAVRHAVFLLNRLPTK 513

Query: 735  ALSGKTPYEAWTGNKPH 785
            A+  +T +EAW G KPH
Sbjct: 514  AMGNRTSFEAWMGKKPH 530



 Score = 72.0 bits (175), Expect(2) = 2e-94
 Identities = 35/61 (57%), Positives = 42/61 (68%)
 Frame = +1

Query: 781 HISHLRVFGCVAYMKVPSVHTTKLDNRRKKVVYLGREPGMKACRLYDPEVERLIVSRDVV 960
           H+ HL VFGC A+ KV + H  KLD+R    VYLG E G KA RL+DP   ++IVSRDVV
Sbjct: 530 HLGHLWVFGCTAHTKVTAPHLMKLDDRSNPFVYLGVEEGSKAHRLFDPRRRQIIVSRDVV 589

Query: 961 F 963
           F
Sbjct: 590 F 590


>gb|ABH07409.1| putative pol polyprotein [Brassica oleracea var. botrytis]
          Length = 1239

 Score =  291 bits (745), Expect(2) = 1e-91
 Identities = 133/259 (51%), Positives = 181/259 (69%)
 Frame = +3

Query: 6    GIFLMKVKRSDNRLYKIILETSESICLMSKMDESSWLWQTRLGHVNFQAMVLMSENKMAY 185
            G  L+KV RS NRLYK+ L+  +  CL++K++E  W W  RLGH+NF+ +  M++ +M  
Sbjct: 297  GRLLVKVLRSPNRLYKVSLKVGKPSCLLTKINEEPWRWHARLGHINFKTIKDMAKLEMVR 356

Query: 186  GLPKIVKPKEICTGCLMSKQTRKSFPCQASFHATQPLELIHGDLCGPITPTTKAGNRYFL 365
            GLP+I + K++C  CL+ KQTR SFP      ++Q LEL+H DLCGPI+P+T A NRY  
Sbjct: 357  GLPEINEEKKLCESCLVGKQTRNSFPSATPHRSSQVLELLHADLCGPISPSTLAQNRYIF 416

Query: 366  LLVDDFSRAMWTYMLTKKDEALDAFKNFRAMXXXXXXXXXXXPRTDRGGEFCSKKFTSYC 545
            +++DD +R MW+ +L +K E  + FK F+A+            RTDRGGEF S+ F  YC
Sbjct: 417  VIIDDNTRYMWSILLKEKSEVFEKFKTFKALVEKEVNKVIVTLRTDRGGEFTSRDFQDYC 476

Query: 546  EDTGITRHFTAPYTPQQNGVVERRNRTIVAMTRSFLKEMQLPFTLWGEAIRHSNYVLNRL 725
             + GI RH TAPYTPQQNGVVERRNRT++ MTRS LK M +P  +WGEA+RH+ Y++NR+
Sbjct: 477  NNNGIRRHLTAPYTPQQNGVVERRNRTLMEMTRSMLKAMNVPNYMWGEAVRHATYLINRV 536

Query: 726  PTRALSGKTPYEAWTGNKP 782
            PTRAL  +TPYE++ G KP
Sbjct: 537  PTRALKNQTPYESFKGRKP 555



 Score = 73.6 bits (179), Expect(2) = 1e-91
 Identities = 43/130 (33%), Positives = 63/130 (48%)
 Frame = +1

Query: 784  ISHLRVFGCVAYMKVPSVHTTKLDNRRKKVVYLGREPGMKACRLYDPEVERLIVSRDVVF 963
            I H+RVFGC+AY K+ +    KLD+R + +V+LG EPG KA RLY+P   R++VSRDV F
Sbjct: 557  IGHIRVFGCLAYAKLDAALLKKLDDRSQTLVHLGIEPGSKAYRLYNPSTRRIVVSRDVKF 616

Query: 964  XXXXXXXXXXXXXXXXXNSCGSFTVVGSQSTEGGDNNMEGEPVTPRSDSLSTGESSQTVT 1143
                              S G F +    S + G+           + +  T +  +T  
Sbjct: 617  DEKACWNWNETDKGNQEES-GKFHMTWGSSIDEGNGPFVIGSHQEENIATETEQQEETTE 675

Query: 1144 VSPEIGENSP 1173
             +PE+    P
Sbjct: 676  PTPEVDHVEP 685


>gb|AAC95173.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1200

 Score =  271 bits (693), Expect(2) = 2e-86
 Identities = 130/260 (50%), Positives = 169/260 (65%)
 Frame = +3

Query: 6    GIFLMKVKRSDNRLYKIILETSESICLMSKMDESSWLWQTRLGHVNFQAMVLMSENKMAY 185
            G  L+K  RS NRLY++ L+   + CL          W  RLGH+N + +  M   +   
Sbjct: 353  GNLLVKATRSRNRLYRVELKVKNTKCLQLAALNDLTKWHARLGHINLETIKAMVTKEFVI 412

Query: 186  GLPKIVKPKEICTGCLMSKQTRKSFPCQASFHATQPLELIHGDLCGPITPTTKAGNRYFL 365
            G+P   K KEIC  C++ KQ R+ FP   ++ A+Q LELIHGDLCGPI+P T A  RY L
Sbjct: 413  GIPSAPKEKEICASCMLGKQARQVFPKATTYRASQILELIHGDLCGPISPPTAAKRRYIL 472

Query: 366  LLVDDFSRAMWTYMLTKKDEALDAFKNFRAMXXXXXXXXXXXPRTDRGGEFCSKKFTSYC 545
            +L+DD SR MW+++L +K EA   FK F+A             RTDRGGEF S++F ++C
Sbjct: 473  VLIDDHSRFMWSFLLKEKSEAFGKFKTFKATVEQETGEKIKTLRTDRGGEFLSQEFQTFC 532

Query: 546  EDTGITRHFTAPYTPQQNGVVERRNRTIVAMTRSFLKEMQLPFTLWGEAIRHSNYVLNRL 725
            E+ GI RH TAPYTPQQNGVVERRNRT++ MTRS +K M +P  LWGEAIRH+ Y++NR+
Sbjct: 533  EEEGIIRHLTAPYTPQQNGVVERRNRTLLGMTRSIMKHMSVPNYLWGEAIRHATYLINRV 592

Query: 726  PTRALSGKTPYEAWTGNKPH 785
             TRAL  +TPYEA    KP+
Sbjct: 593  GTRALINQTPYEALKKKKPN 612



 Score = 76.3 bits (186), Expect(2) = 2e-86
 Identities = 48/131 (36%), Positives = 63/131 (48%)
 Frame = +1

Query: 781  HISHLRVFGCVAYMKVPSVHTTKLDNRRKKVVYLGREPGMKACRLYDPEVERLIVSRDVV 960
            ++ HLRVFGCV+Y KV   H  KLD R + +VYLG E G KA  L DP   ++IVSRDVV
Sbjct: 612  NVEHLRVFGCVSYAKVEFPHLRKLDERSRILVYLGTETGSKAYTLLDPTTRKIIVSRDVV 671

Query: 961  FXXXXXXXXXXXXXXXXXNSCGSFTVVGSQSTEGGDNNMEGEPVTPRSDSLSTGESSQTV 1140
            F                    G FT+  ++      NN E E  T  S+ +   E+  + 
Sbjct: 672  FDENKSWKWANSELIEIQKEPGMFTLAQTEF----HNNEEVENET--SEEIEENEAEDST 725

Query: 1141 TVSPEIGENSP 1173
                E G + P
Sbjct: 726  NKDAEDGLDEP 736