BLASTX nr result

ID: Cnidium21_contig00027230 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00027230
         (294 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFK39377.1| unknown [Medicago truncatula]                           99   5e-19
ref|XP_003601216.1| RNA-binding protein [Medicago truncatula] gi...    99   5e-19
ref|XP_002511350.1| nucleic acid binding protein, putative [Rici...    96   2e-18
emb|CBI14979.3| unnamed protein product [Vitis vinifera]               95   7e-18
ref|XP_002278259.2| PREDICTED: uncharacterized protein LOC100245...    91   8e-17

>gb|AFK39377.1| unknown [Medicago truncatula]
          Length = 507

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 43/78 (55%), Positives = 57/78 (73%), Gaps = 2/78 (2%)
 Frame = +1

Query: 34  DNQKVNEDEAGSSFVWDHDSQLYYHASSGFYHDPNAGWYYSTCDGLYYKFENGNYVILES 213
           D +  N + +  +FVWD +SQLY+HASSGFYHDPNAGWYYST DG+YYKFE+GNYV L+ 
Sbjct: 2   DPEPQNSENSDCTFVWDENSQLYFHASSGFYHDPNAGWYYSTKDGVYYKFEDGNYVPLDC 61

Query: 214 VQTQD--EAGICAQSNED 261
            +  D  E  +C ++  +
Sbjct: 62  NKDDDVEEIYVCKETKPE 79


>ref|XP_003601216.1| RNA-binding protein [Medicago truncatula]
           gi|355490264|gb|AES71467.1| RNA-binding protein
           [Medicago truncatula]
          Length = 560

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 43/78 (55%), Positives = 57/78 (73%), Gaps = 2/78 (2%)
 Frame = +1

Query: 34  DNQKVNEDEAGSSFVWDHDSQLYYHASSGFYHDPNAGWYYSTCDGLYYKFENGNYVILES 213
           D +  N + +  +FVWD +SQLY+HASSGFYHDPNAGWYYST DG+YYKFE+GNYV L+ 
Sbjct: 2   DPEPQNSENSDCTFVWDENSQLYFHASSGFYHDPNAGWYYSTKDGVYYKFEDGNYVPLDC 61

Query: 214 VQTQD--EAGICAQSNED 261
            +  D  E  +C ++  +
Sbjct: 62  NKDDDVEEIYVCKETKPE 79


>ref|XP_002511350.1| nucleic acid binding protein, putative [Ricinus communis]
           gi|223550465|gb|EEF51952.1| nucleic acid binding
           protein, putative [Ricinus communis]
          Length = 417

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 46/87 (52%), Positives = 59/87 (67%), Gaps = 3/87 (3%)
 Frame = +1

Query: 28  MEDNQKVNEDEAGS---SFVWDHDSQLYYHASSGFYHDPNAGWYYSTCDGLYYKFENGNY 198
           ME  ++    E G    SFVWD  +QLY+HASSGFYHDP+AGWY+S+ DGLYYKFENG+Y
Sbjct: 1   MEGGKETELQETGGNNCSFVWDDSTQLYFHASSGFYHDPSAGWYFSSRDGLYYKFENGSY 60

Query: 199 VILESVQTQDEAGICAQSNEDLDHTLL 279
           V+LE +    E+     S   L+ TL+
Sbjct: 61  VLLEYILLHYESPNIVFSQLRLEETLI 87


>emb|CBI14979.3| unnamed protein product [Vitis vinifera]
          Length = 483

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 42/73 (57%), Positives = 52/73 (71%)
 Frame = +1

Query: 67  SSFVWDHDSQLYYHASSGFYHDPNAGWYYSTCDGLYYKFENGNYVILESVQTQDEAGICA 246
           S F WD  SQLY+H SSGFYHDPNAGWYYS+ DGLYYKFE+GNYV+L+S + Q +     
Sbjct: 12  SIFKWDEKSQLYFHPSSGFYHDPNAGWYYSSRDGLYYKFEDGNYVLLDSQKVQGDECAID 71

Query: 247 QSNEDLDHTLLQN 285
           +  E L    +Q+
Sbjct: 72  EGGEVLPGNTIQD 84


>ref|XP_002278259.2| PREDICTED: uncharacterized protein LOC100245077 [Vitis vinifera]
          Length = 421

 Score = 91.3 bits (225), Expect = 8e-17
 Identities = 38/49 (77%), Positives = 43/49 (87%)
 Frame = +1

Query: 67  SSFVWDHDSQLYYHASSGFYHDPNAGWYYSTCDGLYYKFENGNYVILES 213
           S F WD  SQLY+H SSGFYHDPNAGWYYS+ DGLYYKFE+GNYV+L+S
Sbjct: 12  SIFKWDEKSQLYFHPSSGFYHDPNAGWYYSSRDGLYYKFEDGNYVLLDS 60


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