BLASTX nr result
ID: Cnidium21_contig00027226
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00027226
(1093 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AFK13834.1| putative PIF1 DNA helicase/replication protein A1... 127 3e-68
ref|XP_003606913.1| ATP-dependent DNA helicase PIF1 [Medicago tr... 121 2e-65
ref|XP_003609124.1| ATP-dependent DNA helicase PIF1 [Medicago tr... 120 6e-65
ref|XP_003609074.1| ATP-dependent DNA helicase PIF1 [Medicago tr... 120 6e-65
ref|XP_003612653.1| ATP-dependent DNA helicase PIF1 [Medicago tr... 121 1e-64
>gb|AFK13834.1| putative PIF1 DNA helicase/replication protein A1-like protein [Beta
vulgaris subsp. vulgaris]
Length = 2037
Score = 127 bits (319), Expect(4) = 3e-68
Identities = 67/156 (42%), Positives = 86/156 (55%), Gaps = 21/156 (13%)
Frame = +1
Query: 283 MKLDAMMADFIKNNVFGCVLA---------------------GDGDKLINLEDIDAVISA 399
+KLD ++ D + +FG V A +K EDID +ISA
Sbjct: 1162 IKLDQLIKDLREEKIFGRVQAVVYTIEFQKRGLPHAHILLFMHPDNKFPTAEDIDKIISA 1221
Query: 400 EIPDKATDRIAYKAVSQFMLHESCGEANPKCPCMSKGRCTKHYPKAFNNNTFVDADGYAL 579
EIPDK+ Y ++ M+H CG AN K PCM G C+KH+PK F + T D +GY +
Sbjct: 1222 EIPDKSKYPKLYDILADCMMHGPCGTANDKSPCMRDGSCSKHFPKRFADRTTTDGEGYPI 1281
Query: 580 YRRRDMGRTVECNKIHLDNRHVVPYHRSLFVKYQGH 687
YRRRD GRTV N +HLDNR VVPY+ L +KYQ H
Sbjct: 1282 YRRRDDGRTVLKNGVHLDNRFVVPYNAKLLLKYQAH 1317
Score = 95.1 bits (235), Expect(4) = 3e-68
Identities = 57/135 (42%), Positives = 74/135 (54%), Gaps = 2/135 (1%)
Frame = +2
Query: 689 NVKCCNRALSIKYLFKYIDKGPNTTIVVLVRNDQHIIDGNQPSTSRIRAYLDEINNYL*C 868
NV+ CN+ SIKYLFKYI+KG + I L H G+ TS +DEI Y C
Sbjct: 1319 NVEWCNQHRSIKYLFKYINKGHDRVIATL----SHDTRGDASDTSDT---VDEIKTYYDC 1371
Query: 869 RYVSAAEAAWRIFEFLIHHREPFVQHLFFHLENEHVVRFRDNETLPEVVRRVDPDGTMFI 1048
RY+S EAAWRIF F IH R P V+ L FHL E + F + +++ V+ R + +MF
Sbjct: 1372 RYISPCEAAWRIFGFDIHFRSPAVERLNFHLPGEQNIVFEEMDSIQRVIDRPGIEHSMFT 1431
Query: 1049 *W--LMNNLCDEVVR 1087
W L C E +R
Sbjct: 1432 AWMELKGATCYEDIR 1446
Score = 54.3 bits (129), Expect(4) = 3e-68
Identities = 25/48 (52%), Positives = 31/48 (64%)
Frame = +3
Query: 138 KTFRDSLAVCKEYGHPDLFFTFTCNPKWDEIQSVVRSAGS*DASVRPD 281
+ + D++A+CK YG+PDLF TFTCN KW EI V G A RPD
Sbjct: 1108 QNYLDAMALCKWYGYPDLFITFTCNAKWPEITRFVNQQGL-KAEDRPD 1154
Score = 51.2 bits (121), Expect(4) = 3e-68
Identities = 23/48 (47%), Positives = 34/48 (70%)
Frame = +2
Query: 2 HQSIIRSYLYKNIVDSFRRGDVVATDVGKHVIFPSSFTCGYRYMQQNF 145
+Q +RS +YKN+ ++ + G+ A+ VGK +I PSSFT G RYM QN+
Sbjct: 1063 NQKNLRSEIYKNVCEAAQLGNTDASSVGKRIILPSSFTGGARYMVQNY 1110
>ref|XP_003606913.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]
gi|355507968|gb|AES89110.1| ATP-dependent DNA helicase
PIF1 [Medicago truncatula]
Length = 1558
Score = 121 bits (304), Expect(3) = 2e-65
Identities = 62/156 (39%), Positives = 87/156 (55%), Gaps = 21/156 (13%)
Frame = +1
Query: 283 MKLDAMMADFIKNNVFGCVLAG---------------------DGDKLINLEDIDAVISA 399
MKLD +M ++ FG +++ +K EDID +I+A
Sbjct: 437 MKLDQLMKHIVEGQYFGKIISAIYTIEFQKRGLPHAHILLWLHPSNKYPTPEDIDKIITA 496
Query: 400 EIPDKATDRIAYKAVSQFMLHESCGEANPKCPCMSKGRCTKHYPKAFNNNTFVDADGYAL 579
E+P K D + AV QFMLH CG+AN PCM G C++ +PK+F + T +D DG+
Sbjct: 497 EMPSKEDDPECFNAVKQFMLHGPCGDANINAPCMIDGICSRKFPKSFFDETTIDRDGFPT 556
Query: 580 YRRRDMGRTVECNKIHLDNRHVVPYHRSLFVKYQGH 687
YRRRD GR V+ I+LDNR+VVPY+R L + +Q H
Sbjct: 557 YRRRDDGRHVKKGDINLDNRYVVPYNRGLLLAFQAH 592
Score = 116 bits (291), Expect(3) = 2e-65
Identities = 58/135 (42%), Positives = 82/135 (60%)
Frame = +2
Query: 689 NVKCCNRALSIKYLFKYIDKGPNTTIVVLVRNDQHIIDGNQPSTSRIRAYLDEINNYL*C 868
NV+ CN++ +IKYLFKY+ KGP+ I+V+ N + GN+ + + +DE+ +L C
Sbjct: 594 NVEWCNKSRAIKYLFKYLHKGPDRAIMVIEDN----VLGNRSTNATHITMVDEVKTFLDC 649
Query: 869 RYVSAAEAAWRIFEFLIHHREPFVQHLFFHLENEHVVRFRDNETLPEVVRRVDPDGTMFI 1048
RYVSA EA WRIF F IH+R P V L FHL EH + RD+E L +V+ + + TMF
Sbjct: 650 RYVSACEACWRIFNFDIHYRNPAVMRLSFHLPEEHSITLRDSEQLSDVISKEGVEHTMFT 709
Query: 1049 *WLMNNLCDEVVRDL 1093
W++ N R L
Sbjct: 710 EWMLMNSMSSEARTL 724
Score = 59.7 bits (143), Expect(3) = 2e-65
Identities = 27/72 (37%), Positives = 42/72 (58%)
Frame = +2
Query: 2 HQSIIRSYLYKNIVDSFRRGDVVATDVGKHVIFPSSFTCGYRYMQQNFQGLPCSLQRIWA 181
+Q+++R+ LY+N+ D+ RGD +A GK ++ PSSFT G RYM QN+Q +
Sbjct: 337 NQTVLRTDLYRNVCDAVVRGDTIAAATGKRIVLPSSFTGGPRYMVQNYQDAMAICRTFGN 396
Query: 182 PRLILHIYLQPK 217
P + + PK
Sbjct: 397 PDIFMTFTANPK 408
>ref|XP_003609124.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]
gi|355510179|gb|AES91321.1| ATP-dependent DNA helicase
PIF1 [Medicago truncatula]
Length = 1558
Score = 120 bits (300), Expect(3) = 6e-65
Identities = 62/156 (39%), Positives = 86/156 (55%), Gaps = 21/156 (13%)
Frame = +1
Query: 283 MKLDAMMADFIKNNVFGCVLAG---------------------DGDKLINLEDIDAVISA 399
MKLD +M ++ FG +++ +K EDID +I+A
Sbjct: 437 MKLDQLMKHIVEGQYFGKIISAIYTIEFQKRGLPHAHILLWLHPSNKYPTPEDIDKIITA 496
Query: 400 EIPDKATDRIAYKAVSQFMLHESCGEANPKCPCMSKGRCTKHYPKAFNNNTFVDADGYAL 579
E+P K D + AV QFMLH CG+AN PCM G C++ +PK+F + T +D DG+
Sbjct: 497 EMPSKEDDPECFNAVKQFMLHGPCGDANINAPCMIDGICSRKFPKSFFDETTIDRDGFPT 556
Query: 580 YRRRDMGRTVECNKIHLDNRHVVPYHRSLFVKYQGH 687
YRRRD GR V I+LDNR+VVPY+R L + +Q H
Sbjct: 557 YRRRDDGRHVIKGDINLDNRYVVPYNRGLLLAFQAH 592
Score = 116 bits (291), Expect(3) = 6e-65
Identities = 58/135 (42%), Positives = 82/135 (60%)
Frame = +2
Query: 689 NVKCCNRALSIKYLFKYIDKGPNTTIVVLVRNDQHIIDGNQPSTSRIRAYLDEINNYL*C 868
NV+ CN++ +IKYLFKY+ KGP+ I+V+ N + GN+ + + +DE+ +L C
Sbjct: 594 NVEWCNKSRAIKYLFKYLHKGPDRAIMVIEDN----VLGNRSTNATHITMVDEVKTFLDC 649
Query: 869 RYVSAAEAAWRIFEFLIHHREPFVQHLFFHLENEHVVRFRDNETLPEVVRRVDPDGTMFI 1048
RYVSA EA WRIF F IH+R P V L FHL EH + RD+E L +V+ + + TMF
Sbjct: 650 RYVSACEACWRIFNFDIHYRNPAVMRLSFHLPEEHSITLRDSEQLSDVISKEGVEHTMFT 709
Query: 1049 *WLMNNLCDEVVRDL 1093
W++ N R L
Sbjct: 710 EWMLMNSMSSEARTL 724
Score = 59.7 bits (143), Expect(3) = 6e-65
Identities = 27/72 (37%), Positives = 42/72 (58%)
Frame = +2
Query: 2 HQSIIRSYLYKNIVDSFRRGDVVATDVGKHVIFPSSFTCGYRYMQQNFQGLPCSLQRIWA 181
+Q+++R+ LY+N+ D+ RGD +A GK ++ PSSFT G RYM QN+Q +
Sbjct: 337 NQTVLRTDLYRNVCDAVVRGDTIAAATGKRIVLPSSFTGGPRYMVQNYQDAMAICRTFGN 396
Query: 182 PRLILHIYLQPK 217
P + + PK
Sbjct: 397 PDIFMTFTANPK 408
>ref|XP_003609074.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]
gi|355510129|gb|AES91271.1| ATP-dependent DNA helicase
PIF1 [Medicago truncatula]
Length = 1531
Score = 120 bits (300), Expect(3) = 6e-65
Identities = 62/156 (39%), Positives = 86/156 (55%), Gaps = 21/156 (13%)
Frame = +1
Query: 283 MKLDAMMADFIKNNVFGCVLAG---------------------DGDKLINLEDIDAVISA 399
MKLD +M ++ FG +++ +K EDID +I+A
Sbjct: 410 MKLDQLMKHIVEGQYFGKIISAIYTIEFQKRGLPHAHILLWLHPSNKYPTPEDIDKIITA 469
Query: 400 EIPDKATDRIAYKAVSQFMLHESCGEANPKCPCMSKGRCTKHYPKAFNNNTFVDADGYAL 579
E+P K D + AV QFMLH CG+AN PCM G C++ +PK+F + T +D DG+
Sbjct: 470 EMPSKEDDPECFNAVKQFMLHGPCGDANINAPCMIDGICSRKFPKSFFDETTIDRDGFPT 529
Query: 580 YRRRDMGRTVECNKIHLDNRHVVPYHRSLFVKYQGH 687
YRRRD GR V I+LDNR+VVPY+R L + +Q H
Sbjct: 530 YRRRDDGRHVIKGDINLDNRYVVPYNRGLLLAFQAH 565
Score = 116 bits (291), Expect(3) = 6e-65
Identities = 58/135 (42%), Positives = 82/135 (60%)
Frame = +2
Query: 689 NVKCCNRALSIKYLFKYIDKGPNTTIVVLVRNDQHIIDGNQPSTSRIRAYLDEINNYL*C 868
NV+ CN++ +IKYLFKY+ KGP+ I+V+ N + GN+ + + +DE+ +L C
Sbjct: 567 NVEWCNKSRAIKYLFKYLHKGPDRAIMVIEDN----VLGNRSTNATHITMVDEVKTFLDC 622
Query: 869 RYVSAAEAAWRIFEFLIHHREPFVQHLFFHLENEHVVRFRDNETLPEVVRRVDPDGTMFI 1048
RYVSA EA WRIF F IH+R P V L FHL EH + RD+E L +V+ + + TMF
Sbjct: 623 RYVSACEACWRIFNFDIHYRNPAVMRLSFHLPEEHSITLRDSEQLSDVISKEGVEHTMFT 682
Query: 1049 *WLMNNLCDEVVRDL 1093
W++ N R L
Sbjct: 683 EWMLMNSMSSEARTL 697
Score = 59.7 bits (143), Expect(3) = 6e-65
Identities = 27/72 (37%), Positives = 42/72 (58%)
Frame = +2
Query: 2 HQSIIRSYLYKNIVDSFRRGDVVATDVGKHVIFPSSFTCGYRYMQQNFQGLPCSLQRIWA 181
+Q+++R+ LY+N+ D+ RGD +A GK ++ PSSFT G RYM QN+Q +
Sbjct: 310 NQTVLRTDLYRNVCDAVVRGDTIAAATGKRIVLPSSFTGGPRYMVQNYQDAMAICRTFGN 369
Query: 182 PRLILHIYLQPK 217
P + + PK
Sbjct: 370 PDIFMTFTANPK 381
>ref|XP_003612653.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]
gi|355513988|gb|AES95611.1| ATP-dependent DNA helicase
PIF1 [Medicago truncatula]
Length = 1427
Score = 121 bits (304), Expect(3) = 1e-64
Identities = 62/156 (39%), Positives = 87/156 (55%), Gaps = 21/156 (13%)
Frame = +1
Query: 283 MKLDAMMADFIKNNVFGCVLAG---------------------DGDKLINLEDIDAVISA 399
MKLD +M ++ FG +++ +K EDID +I+A
Sbjct: 437 MKLDQLMKHIVEGQYFGKIISAIYTIEFQKRGLPHAHILLWLHPSNKYPTPEDIDKIITA 496
Query: 400 EIPDKATDRIAYKAVSQFMLHESCGEANPKCPCMSKGRCTKHYPKAFNNNTFVDADGYAL 579
E+P K D + AV QFMLH CG+AN PCM G C++ +PK+F + T +D DG+
Sbjct: 497 EMPSKEDDPECFNAVKQFMLHGPCGDANINAPCMIDGICSRKFPKSFFDETTIDRDGFPT 556
Query: 580 YRRRDMGRTVECNKIHLDNRHVVPYHRSLFVKYQGH 687
YRRRD GR V+ I+LDNR+VVPY+R L + +Q H
Sbjct: 557 YRRRDDGRHVKKGDINLDNRYVVPYNRGLLLAFQAH 592
Score = 114 bits (284), Expect(3) = 1e-64
Identities = 56/135 (41%), Positives = 81/135 (60%)
Frame = +2
Query: 689 NVKCCNRALSIKYLFKYIDKGPNTTIVVLVRNDQHIIDGNQPSTSRIRAYLDEINNYL*C 868
NV+ CN++ +IKYLFKY+ KGP+ +V+ N + GN+ + + +DE+ +L C
Sbjct: 594 NVEWCNKSRAIKYLFKYLHKGPDRATMVIEDN----VLGNRSTNATHITMVDEVKTFLDC 649
Query: 869 RYVSAAEAAWRIFEFLIHHREPFVQHLFFHLENEHVVRFRDNETLPEVVRRVDPDGTMFI 1048
RYVSA EA WRIF F IH+R P V L FHL EH + RD+E + +V+ + + TMF
Sbjct: 650 RYVSACEACWRIFNFDIHYRNPAVMRLSFHLPEEHSITLRDSEQMSDVISKEGVEHTMFT 709
Query: 1049 *WLMNNLCDEVVRDL 1093
W++ N R L
Sbjct: 710 EWMLMNSMSSEARTL 724
Score = 60.1 bits (144), Expect(3) = 1e-64
Identities = 27/72 (37%), Positives = 42/72 (58%)
Frame = +2
Query: 2 HQSIIRSYLYKNIVDSFRRGDVVATDVGKHVIFPSSFTCGYRYMQQNFQGLPCSLQRIWA 181
+Q+++R+ LY+N+ D+ RGD +A GK ++ PSSFT G RYM QN+Q +
Sbjct: 337 NQTVLRTDLYRNVCDAVVRGDTIAAATGKRIVLPSSFTGGSRYMVQNYQDAMAICRTFGN 396
Query: 182 PRLILHIYLQPK 217
P + + PK
Sbjct: 397 PDIFMTFTANPK 408