BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00027174
         (275 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI21137.3| unnamed protein product [Vitis vinifera]              154   5e-36
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...   154   5e-36
gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bu...   147   9e-34
gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode...   147   9e-34
ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Me...   145   3e-33

>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score =  154 bits (390), Expect = 5e-36
 Identities = 68/91 (74%), Positives = 81/91 (89%)
 Frame = +1

Query: 1   MIAEMRRTRQHVDYTGRVGDARYPHPSHWGKLCFLSTPDGENCGLIKNLASTGLVSTTVF 180
           M A+MR+TRQ V YTG+VGDARYPHPSHWGK+CFLSTPDGENCGL+KNLA TGLVST V 
Sbjct: 541 MTADMRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVL 600

Query: 181 EPILDKLLNCGMEELVDDTSSSLRGKDNIFL 273
           +P++DKL +CGME+LVDDTS+ L GK+ +FL
Sbjct: 601 DPLVDKLFDCGMEKLVDDTSTKLSGKNKVFL 631


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
           vinifera]
          Length = 1198

 Score =  154 bits (390), Expect = 5e-36
 Identities = 68/91 (74%), Positives = 81/91 (89%)
 Frame = +1

Query: 1   MIAEMRRTRQHVDYTGRVGDARYPHPSHWGKLCFLSTPDGENCGLIKNLASTGLVSTTVF 180
           M A+MR+TRQ V YTG+VGDARYPHPSHWGK+CFLSTPDGENCGL+KNLA TGLVST V 
Sbjct: 505 MTADMRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVL 564

Query: 181 EPILDKLLNCGMEELVDDTSSSLRGKDNIFL 273
           +P++DKL +CGME+LVDDTS+ L GK+ +FL
Sbjct: 565 DPLVDKLFDCGMEKLVDDTSTKLSGKNKVFL 595


>gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bulbocastanum]
          Length = 1018

 Score =  147 bits (371), Expect = 9e-34
 Identities = 64/91 (70%), Positives = 79/91 (86%)
 Frame = +1

Query: 1   MIAEMRRTRQHVDYTGRVGDARYPHPSHWGKLCFLSTPDGENCGLIKNLASTGLVSTTVF 180
           M A++R+TRQ V YTG+VGDARYPHPSHWGK+CFLSTPDGENCGL+KNLAS GLVSTTV 
Sbjct: 524 MTADLRKTRQQVTYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASMGLVSTTVL 583

Query: 181 EPILDKLLNCGMEELVDDTSSSLRGKDNIFL 273
           +P+L+ L  CGM++LVDD+++SL GK  + L
Sbjct: 584 KPLLETLFRCGMQKLVDDSATSLHGKQKVLL 614


>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron
           macrophyllum]
          Length = 1019

 Score =  147 bits (371), Expect = 9e-34
 Identities = 68/90 (75%), Positives = 78/90 (86%)
 Frame = +1

Query: 4   IAEMRRTRQHVDYTGRVGDARYPHPSHWGKLCFLSTPDGENCGLIKNLASTGLVSTTVFE 183
           IA+MR+TRQ V YTG+VGDARYPHPSHWGK+CFLSTPDGENCGL+KNLA TGLVST + E
Sbjct: 326 IADMRKTRQQVSYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLAITGLVSTNIEE 385

Query: 184 PILDKLLNCGMEELVDDTSSSLRGKDNIFL 273
             LDKLL+ GME+LVDDTS+ L GK  +FL
Sbjct: 386 HFLDKLLDSGMEKLVDDTSTLLSGKVKVFL 415


>ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
           gi|355492343|gb|AES73546.1| DNA-directed RNA polymerase
           subunit beta [Medicago truncatula]
          Length = 1237

 Score =  145 bits (367), Expect = 3e-33
 Identities = 67/90 (74%), Positives = 78/90 (86%)
 Frame = +1

Query: 4   IAEMRRTRQHVDYTGRVGDARYPHPSHWGKLCFLSTPDGENCGLIKNLASTGLVSTTVFE 183
           +AE+RRTRQ V YTG+VGDARYPHPSHWGK+CFLSTPDGENCGL+KNLA TG+VST V E
Sbjct: 546 MAELRRTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGVVSTDVTE 605

Query: 184 PILDKLLNCGMEELVDDTSSSLRGKDNIFL 273
            IL +L +CGMEELVDDT++ L  KD +FL
Sbjct: 606 SILPQLSDCGMEELVDDTTTVLGKKDKVFL 635