BLASTX nr result
ID: Cnidium21_contig00027148
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Cnidium21_contig00027148 (417 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hop... 68 7e-10 emb|CBL54154.1| hypothetical protein (mitochondrion) [Beta vulga... 67 1e-09 gb|ABH07899.1| putative polyprotein [Solanum lycopersicum] 67 1e-09 gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsi... 65 6e-09 emb|CAN71595.1| hypothetical protein VITISV_010143 [Vitis vinifera] 65 7e-09 >gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hopscotch polyprotein (gb|U12626) [Arabidopsis thaliana] Length = 1315 Score = 68.2 bits (165), Expect = 7e-10 Identities = 34/63 (53%), Positives = 42/63 (66%) Frame = +2 Query: 206 YKYFLTIVDDNTRHTWVYLLSQKSDAL*TLATIFMYVKNHFKVDIKVLRSDNALEFDTSQ 385 Y+YFLTIVDD +R TWVYLL KSD L + T V+N F+ IK +RSDNA E + +Q Sbjct: 482 YRYFLTIVDDYSRATWVYLLRNKSDVLTVIPTFVTMVENQFETTIKGVRSDNAPELNFTQ 541 Query: 386 CKH 394 H Sbjct: 542 FYH 544 >emb|CBL54154.1| hypothetical protein (mitochondrion) [Beta vulgaris subsp. maritima] Length = 266 Score = 67.4 bits (163), Expect = 1e-09 Identities = 32/69 (46%), Positives = 43/69 (62%) Frame = +2 Query: 209 KYFLTIVDDNTRHTWVYLLSQKSDAL*TLATIFMYVKNHFKVDIKVLRSDNALEFDTSQC 388 +YF+TIVDD +R WV LL QKSDA + VK + +KV+RSDNA EF+ +QC Sbjct: 65 RYFMTIVDDYSRVIWVQLLKQKSDAYEAIKGFLKMVKTQYGKQVKVIRSDNAFEFEDNQC 124 Query: 389 KHFFSSHEV 415 K ++ V Sbjct: 125 KALYADQGV 133 >gb|ABH07899.1| putative polyprotein [Solanum lycopersicum] Length = 1428 Score = 67.0 bits (162), Expect = 1e-09 Identities = 32/74 (43%), Positives = 45/74 (60%) Frame = +2 Query: 182 RSPNIKGKYKYFLTIVDDNTRHTWVYLLSQKSDAL*TLATIFMYVKNHFKVDIKVLRSDN 361 ++P + K+ YFLTIVDD +R WV+LL KS+ + + F + F +KV+RSDN Sbjct: 570 KTPTLNRKH-YFLTIVDDYSRFVWVHLLQLKSETIVAIKNFFSMINTQFNSHVKVVRSDN 628 Query: 362 ALEFDTSQCKHFFS 403 EF SQCK F+ Sbjct: 629 GTEFLNSQCKDLFN 642 >gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsis thaliana] Length = 1454 Score = 65.1 bits (157), Expect = 6e-09 Identities = 30/55 (54%), Positives = 38/55 (69%) Frame = +2 Query: 206 YKYFLTIVDDNTRHTWVYLLSQKSDAL*TLATIFMYVKNHFKVDIKVLRSDNALE 370 YKYFLTIVDD++R TW+YLL KS+ L V+N +KV +K +RSDNA E Sbjct: 633 YKYFLTIVDDHSRATWMYLLKTKSEVLTVFPAFIQQVENQYKVKVKAVRSDNAPE 687 >emb|CAN71595.1| hypothetical protein VITISV_010143 [Vitis vinifera] Length = 1523 Score = 64.7 bits (156), Expect = 7e-09 Identities = 43/131 (32%), Positives = 62/131 (47%), Gaps = 10/131 (7%) Frame = +2 Query: 53 VITCTSCGCRGH----------SAEKCWTVVGYPYWHTQHDPNKIQPPQKPRNRSPNIKG 202 V TC+ C H S++ C+ ++ W H P++ G Sbjct: 558 VSTCSICPLAKHTRTPFPLSVSSSDSCFDLIHVDIWGGYH--------------VPSLSG 603 Query: 203 KYKYFLTIVDDNTRHTWVYLLSQKSDAL*TLATIFMYVKNHFKVDIKVLRSDNALEFDTS 382 +YFLTIVDD++R TWVYL+ KS+A L V N F +K++RSDN EF + Sbjct: 604 A-QYFLTIVDDHSRSTWVYLMHHKSEARSLLVHFVNLVANQFGSQVKIVRSDNGPEFKHT 662 Query: 383 QCKHFFSSHEV 415 Q F+SS + Sbjct: 663 Q---FYSSRGI 670