BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00027148
         (417 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hop...    68   7e-10
emb|CBL54154.1| hypothetical protein (mitochondrion) [Beta vulga...    67   1e-09
gb|ABH07899.1| putative polyprotein [Solanum lycopersicum]             67   1e-09
gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsi...    65   6e-09
emb|CAN71595.1| hypothetical protein VITISV_010143 [Vitis vinifera]    65   7e-09

>gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hopscotch polyprotein
           (gb|U12626) [Arabidopsis thaliana]
          Length = 1315

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 34/63 (53%), Positives = 42/63 (66%)
 Frame = +2

Query: 206 YKYFLTIVDDNTRHTWVYLLSQKSDAL*TLATIFMYVKNHFKVDIKVLRSDNALEFDTSQ 385
           Y+YFLTIVDD +R TWVYLL  KSD L  + T    V+N F+  IK +RSDNA E + +Q
Sbjct: 482 YRYFLTIVDDYSRATWVYLLRNKSDVLTVIPTFVTMVENQFETTIKGVRSDNAPELNFTQ 541

Query: 386 CKH 394
             H
Sbjct: 542 FYH 544


>emb|CBL54154.1| hypothetical protein (mitochondrion) [Beta vulgaris subsp.
           maritima]
          Length = 266

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 32/69 (46%), Positives = 43/69 (62%)
 Frame = +2

Query: 209 KYFLTIVDDNTRHTWVYLLSQKSDAL*TLATIFMYVKNHFKVDIKVLRSDNALEFDTSQC 388
           +YF+TIVDD +R  WV LL QKSDA   +      VK  +   +KV+RSDNA EF+ +QC
Sbjct: 65  RYFMTIVDDYSRVIWVQLLKQKSDAYEAIKGFLKMVKTQYGKQVKVIRSDNAFEFEDNQC 124

Query: 389 KHFFSSHEV 415
           K  ++   V
Sbjct: 125 KALYADQGV 133


>gb|ABH07899.1| putative polyprotein [Solanum lycopersicum]
          Length = 1428

 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 32/74 (43%), Positives = 45/74 (60%)
 Frame = +2

Query: 182 RSPNIKGKYKYFLTIVDDNTRHTWVYLLSQKSDAL*TLATIFMYVKNHFKVDIKVLRSDN 361
           ++P +  K+ YFLTIVDD +R  WV+LL  KS+ +  +   F  +   F   +KV+RSDN
Sbjct: 570 KTPTLNRKH-YFLTIVDDYSRFVWVHLLQLKSETIVAIKNFFSMINTQFNSHVKVVRSDN 628

Query: 362 ALEFDTSQCKHFFS 403
             EF  SQCK  F+
Sbjct: 629 GTEFLNSQCKDLFN 642


>gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1454

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 30/55 (54%), Positives = 38/55 (69%)
 Frame = +2

Query: 206 YKYFLTIVDDNTRHTWVYLLSQKSDAL*TLATIFMYVKNHFKVDIKVLRSDNALE 370
           YKYFLTIVDD++R TW+YLL  KS+ L         V+N +KV +K +RSDNA E
Sbjct: 633 YKYFLTIVDDHSRATWMYLLKTKSEVLTVFPAFIQQVENQYKVKVKAVRSDNAPE 687


>emb|CAN71595.1| hypothetical protein VITISV_010143 [Vitis vinifera]
          Length = 1523

 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 43/131 (32%), Positives = 62/131 (47%), Gaps = 10/131 (7%)
 Frame = +2

Query: 53  VITCTSCGCRGH----------SAEKCWTVVGYPYWHTQHDPNKIQPPQKPRNRSPNIKG 202
           V TC+ C    H          S++ C+ ++    W   H               P++ G
Sbjct: 558 VSTCSICPLAKHTRTPFPLSVSSSDSCFDLIHVDIWGGYH--------------VPSLSG 603

Query: 203 KYKYFLTIVDDNTRHTWVYLLSQKSDAL*TLATIFMYVKNHFKVDIKVLRSDNALEFDTS 382
             +YFLTIVDD++R TWVYL+  KS+A   L      V N F   +K++RSDN  EF  +
Sbjct: 604 A-QYFLTIVDDHSRSTWVYLMHHKSEARSLLVHFVNLVANQFGSQVKIVRSDNGPEFKHT 662

Query: 383 QCKHFFSSHEV 415
           Q   F+SS  +
Sbjct: 663 Q---FYSSRGI 670